Wall clock time and date at job start Tue Mar 31 2020 12:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99637 * 2 1 4 4 H 1.48495 * 109.47482 * 270.00636 * 3 2 1 5 5 H 1.48497 * 109.47028 * 30.00782 * 3 2 1 6 6 H 1.48502 * 109.47104 * 150.00187 * 3 2 1 7 7 C 1.37879 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00105 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99915 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47259 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00065 * 270.00053 * 10 9 7 12 12 C 1.53008 * 109.46734 * 269.99779 * 11 10 9 13 13 C 1.53002 * 117.49674 * 243.62149 * 12 11 10 14 14 C 1.53002 * 117.49470 * 174.99879 * 12 11 10 15 15 C 1.34779 * 119.99957 * 89.99722 * 10 9 7 16 16 O 1.21279 * 119.99898 * 0.02562 * 15 10 9 17 17 C 1.50698 * 119.99881 * 180.02562 * 15 10 9 18 18 C 1.50698 * 109.47187 * 180.02562 * 17 15 10 19 19 C 1.30907 * 121.84133 * 84.97315 * 18 17 15 20 20 S 1.75785 * 109.82109 * 180.02562 * 19 18 17 21 21 C 1.76249 * 90.69696 * 0.02562 * 20 19 18 22 22 N 1.32361 * 141.95163 * 180.02562 * 21 20 19 23 23 C 1.33874 * 109.13546 * 179.97438 * 22 21 20 24 24 C 1.34330 * 108.38786 * 0.02562 * 23 22 21 25 25 N 1.35143 * 109.22650 * 0.02562 * 21 20 19 26 26 H 0.97000 * 120.00624 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47306 * 59.99240 * 9 7 2 28 28 H 1.09010 * 109.46796 * 299.99565 * 9 7 2 29 29 H 1.09002 * 109.46929 * 29.99482 * 11 10 9 30 30 H 1.08998 * 109.47328 * 149.99899 * 11 10 9 31 31 H 1.09004 * 115.54950 * 29.33104 * 12 11 10 32 32 H 1.08996 * 117.49796 * 359.97438 * 13 12 11 33 33 H 1.08996 * 117.49564 * 145.02109 * 13 12 11 34 34 H 1.08997 * 117.49286 * 214.97696 * 14 12 11 35 35 H 1.08997 * 117.50174 * 359.97438 * 14 12 11 36 36 H 1.08997 * 109.47756 * 59.99218 * 17 15 10 37 37 H 1.09007 * 109.47103 * 299.99782 * 17 15 10 38 38 H 1.07999 * 125.09482 * 0.02562 * 19 18 17 39 39 H 1.08000 * 125.80396 * 180.02562 * 23 22 21 40 40 H 1.08001 * 126.43506 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 4.2447 -3.2654 1.2678 12 6 5.6899 -3.0248 1.7088 13 6 6.6135 -4.2415 1.7970 14 6 6.1111 -3.5680 3.0757 15 6 4.2241 -3.2107 -1.1682 16 8 4.0219 -2.6391 -2.2185 17 6 4.7260 -4.6317 -1.1680 18 6 4.8936 -5.1054 -2.5888 19 6 5.9844 -4.8669 -3.2722 20 16 5.8415 -5.5567 -4.8827 21 6 4.2269 -6.1550 -4.5066 22 7 3.2149 -6.8258 -5.0337 23 6 2.2352 -6.9262 -4.1269 24 6 2.6328 -6.3068 -3.0032 25 7 3.9085 -5.8100 -3.2393 26 1 -0.4851 0.8400 0.0004 27 1 3.8752 -0.6802 0.8888 28 1 3.8745 -0.6799 -0.8913 29 1 3.5642 -2.8811 2.0276 30 1 4.0777 -4.3347 1.1378 31 1 6.1294 -2.0813 1.3849 32 1 6.1913 -5.2133 1.5413 33 1 7.6608 -4.0986 1.5309 34 1 6.8280 -2.9821 3.6509 35 1 5.3586 -4.0963 3.6610 36 1 4.0081 -5.2706 -0.6538 37 1 5.6864 -4.6778 -0.6544 38 1 6.8435 -4.3272 -2.9020 39 1 1.2865 -7.4211 -4.2738 40 1 2.0672 -6.2132 -2.0879 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360500057.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:34 Heat of formation + Delta-G solvation = 74.706815 kcal Electronic energy + Delta-G solvation = -24433.944770 eV Core-core repulsion = 20956.332535 eV Total energy + Delta-G solvation = -3477.612235 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.68079 -41.00094 -38.49570 -37.80675 -36.15189 -34.63708 -32.55875 -31.53648 -30.40542 -29.04247 -27.61693 -24.99370 -23.98199 -23.13868 -22.81583 -21.90365 -21.28258 -20.06173 -19.15008 -19.10892 -18.32690 -17.32026 -16.93899 -16.61830 -16.44408 -16.02900 -15.89798 -15.67945 -15.47254 -14.90535 -14.75951 -14.45307 -14.39559 -13.90927 -13.83547 -13.51034 -13.32008 -12.93584 -12.77216 -12.56922 -12.46729 -12.26417 -12.22710 -12.03915 -11.78934 -11.50229 -11.33303 -11.22948 -10.98704 -10.85491 -10.65190 -9.91549 -9.48227 -8.66941 -8.36506 -6.41398 -0.14884 -0.07048 0.59402 1.09242 1.29954 1.33950 1.41697 1.57037 1.68784 1.84845 2.23067 2.28100 2.97502 2.98911 3.25476 3.51441 3.60549 3.86652 3.93442 4.06649 4.15692 4.20198 4.22874 4.31822 4.38056 4.49446 4.60904 4.72282 4.74193 4.83902 4.90180 4.94379 5.04936 5.12989 5.35231 5.37885 5.43344 5.48975 5.56514 5.79661 6.19578 6.59379 6.61541 6.63610 7.18039 7.33185 8.80286 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.011015 B = 0.004562 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.278964 B = 6136.108015 C = 7509.091747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.944 3.056 4 H -0.279 1.279 5 H -0.276 1.276 6 H -0.236 1.236 7 C -0.534 4.534 8 H 0.029 0.971 9 C 0.227 3.773 10 N -0.590 5.590 11 C 0.137 3.863 12 C -0.190 4.190 13 C -0.166 4.166 14 C -0.168 4.168 15 C 0.505 3.495 16 O -0.586 6.586 17 C -0.068 4.068 18 C 0.078 3.922 19 C -0.199 4.199 20 S 0.211 5.789 21 C 0.104 3.896 22 N -0.496 5.496 23 C 0.006 3.994 24 C -0.061 4.061 25 N -0.402 5.402 26 H 0.268 0.732 27 H 0.049 0.951 28 H 0.018 0.982 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.161 0.839 38 H 0.227 0.773 39 H 0.213 0.787 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.542 -13.310 3.313 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.767 3.233 4 H -0.205 1.205 5 H -0.201 1.201 6 H -0.159 1.159 7 C -0.573 4.573 8 H 0.048 0.952 9 C 0.105 3.895 10 N -0.320 5.320 11 C 0.015 3.985 12 C -0.209 4.209 13 C -0.202 4.202 14 C -0.205 4.205 15 C 0.293 3.707 16 O -0.466 6.466 17 C -0.110 4.110 18 C -0.032 4.032 19 C -0.336 4.336 20 S 0.461 5.539 21 C -0.261 4.261 22 N -0.221 5.221 23 C -0.143 4.143 24 C -0.194 4.194 25 N -0.081 5.081 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.138 0.862 37 H 0.179 0.821 38 H 0.244 0.756 39 H 0.229 0.771 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 18.106 -13.237 0.932 22.448 hybrid contribution -1.699 1.495 1.732 2.850 sum 16.407 -11.742 2.664 20.351 Atomic orbital electron populations 1.70041 1.08206 1.28278 1.51960 1.25818 0.95610 1.03237 0.93944 0.85774 0.80052 0.78653 0.78848 1.20488 1.20092 1.15865 1.21542 0.91628 0.93141 1.50969 0.95225 1.19292 0.92544 0.80565 0.97085 1.47867 1.63328 1.14604 1.06198 1.21327 0.95034 0.97644 0.84541 1.22660 0.95371 0.99611 1.03278 1.23239 0.99773 0.96128 1.01100 1.23009 1.03646 1.03595 0.90250 1.20863 0.77676 0.88894 0.83284 1.90705 1.53943 1.69172 1.32764 1.20595 1.07287 0.92256 0.90911 1.18653 0.88049 0.99309 0.97158 1.25240 1.03500 1.07765 0.97069 1.84339 1.00822 1.56536 1.12184 1.26814 1.04539 1.07687 0.87080 1.70528 1.00010 1.20246 1.31281 1.22913 0.99836 1.02820 0.88743 1.23278 0.85027 1.06499 1.04546 1.43925 1.13744 1.38308 1.12079 0.92325 0.93293 0.96424 0.90791 0.88339 0.88869 0.86986 0.87584 0.88149 0.87896 0.86158 0.82116 0.75637 0.77056 0.78440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.31 13.96 21.45 0.30 -59.01 16 2 C 0.01 0.70 5.47 84.66 0.46 1.17 16 3 Si 0.94 43.88 27.47 68.60 1.88 45.76 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 7 C -0.53 -30.61 9.94 25.60 0.25 -30.36 16 8 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 9 C 0.23 10.56 4.23 85.63 0.36 10.92 16 10 N -0.59 -21.59 2.46 -826.13 -2.03 -23.62 16 11 C 0.14 3.52 5.49 86.38 0.47 4.00 16 12 C -0.19 -3.72 5.95 -10.79 -0.06 -3.78 16 13 C -0.17 -2.03 9.18 30.60 0.28 -1.74 16 14 C -0.17 -2.42 10.25 30.60 0.31 -2.11 16 15 C 0.50 18.32 7.67 87.66 0.67 19.00 16 16 O -0.59 -27.86 15.61 -3.03 -0.05 -27.91 16 17 C -0.07 -1.59 4.56 29.10 0.13 -1.46 16 18 C 0.08 2.09 5.24 41.73 0.22 2.31 16 19 C -0.20 -4.42 10.81 67.88 0.73 -3.68 16 20 S 0.21 5.08 23.37 -56.49 -1.32 3.76 16 21 C 0.10 3.36 8.93 179.68 1.60 4.97 16 22 N -0.50 -16.94 11.33 -196.81 -2.23 -19.17 16 23 C 0.01 0.17 11.82 83.49 0.99 1.16 16 24 C -0.06 -1.77 11.97 82.67 0.99 -0.78 16 25 N -0.40 -12.43 3.19 -342.29 -1.09 -13.52 16 26 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 27 H 0.05 2.10 7.13 -2.39 -0.02 2.08 16 28 H 0.02 0.89 6.85 -2.38 -0.02 0.87 16 29 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 30 H 0.10 1.92 6.17 -2.39 -0.01 1.91 16 31 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.11 1.00 7.87 -2.39 -0.02 0.99 16 33 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.12 2.41 7.40 -2.39 -0.02 2.39 16 37 H 0.16 2.35 6.83 -2.38 -0.02 2.34 16 38 H 0.23 3.23 8.06 -2.91 -0.02 3.21 16 39 H 0.21 4.47 8.06 -2.91 -0.02 4.45 16 40 H 0.20 4.73 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -83.49 353.08 3.89 -79.59 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 1.00 Total: 14.53 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 7.42 Total: -0.41 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -5.05 Total: -115.33 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.05 Total: -27.91 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.76 kcal Atomic # 16 Polarization: 5.08 SS G_CDS: -1.32 Total: 3.76 kcal Total: -83.49 3.89 -79.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360500057.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.299 kcal (2) G-P(sol) polarization free energy of solvation -83.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds