Wall clock time and date at job start Tue Mar 31 2020 12:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31742 * 123.76529 * 2 1 4 4 N 1.27575 * 118.27238 * 179.97438 * 3 2 1 5 5 S 1.56508 * 109.22153 * 0.02562 * 4 3 2 6 6 C 1.35336 * 123.76751 * 179.97438 * 2 1 3 7 7 C 1.50697 * 127.92620 * 0.03099 * 6 2 1 8 8 N 1.46903 * 109.47438 * 89.97837 * 7 6 2 9 9 C 1.46898 * 111.00140 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47125 * 324.99444 * 9 8 7 11 11 C 1.53002 * 109.47404 * 84.99980 * 9 8 7 12 12 C 1.50706 * 109.46874 * 205.00168 * 9 8 7 13 13 C 1.38300 * 119.92636 * 319.72237 * 12 9 8 14 14 C 1.38103 * 120.06768 * 179.72692 * 13 12 9 15 15 C 1.38885 * 119.92402 * 0.54923 * 14 13 12 16 16 O 1.35748 * 120.06401 * 179.74895 * 15 14 13 17 17 C 1.34831 * 116.99941 * 174.44407 * 16 15 14 18 18 H 1.08002 * 120.00055 * 5.05280 * 17 16 15 19 19 C 1.38652 * 120.00031 * 185.05482 * 17 16 15 20 20 N 1.31558 * 119.99986 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00006 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46939 * 90.00264 * 21 19 17 23 23 H 1.48504 * 109.46887 * 209.99725 * 21 19 17 24 24 H 1.48496 * 109.47286 * 330.00025 * 21 19 17 25 25 C 1.38874 * 119.86660 * 359.72609 * 15 14 13 26 26 C 1.38100 * 119.92943 * 359.97438 * 25 15 14 27 27 H 1.09004 * 109.47112 * 270.03665 * 1 2 3 28 28 H 1.09002 * 109.47389 * 30.03554 * 1 2 3 29 29 H 1.09004 * 109.47458 * 150.03440 * 1 2 3 30 30 H 1.09007 * 109.47597 * 209.97787 * 7 6 2 31 31 H 1.09002 * 109.47368 * 329.97616 * 7 6 2 32 32 H 1.00894 * 110.99783 * 56.04658 * 8 7 6 33 33 H 1.09001 * 109.47163 * 180.02562 * 11 9 8 34 34 H 1.08998 * 109.46645 * 299.99879 * 11 9 8 35 35 H 1.09000 * 109.46927 * 59.99509 * 11 9 8 36 36 H 1.08000 * 119.97030 * 0.02562 * 13 12 9 37 37 H 1.07990 * 120.03674 * 180.27182 * 14 13 12 38 38 H 0.97003 * 120.00293 * 180.02562 * 20 19 17 39 39 H 1.07996 * 120.03736 * 179.97438 * 25 15 14 40 40 H 1.08001 * 119.96504 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2392 1.0952 0.0000 4 7 3.5091 0.9731 0.0005 5 16 3.8805 -0.5473 0.0004 6 6 2.2592 -1.1250 0.0005 7 6 1.7859 -2.5557 0.0005 8 7 1.6322 -3.0208 -1.3845 9 6 1.1704 -4.4147 -1.4236 10 1 1.6085 -4.9661 -0.5917 11 6 -0.3552 -4.4500 -1.3119 12 6 1.5936 -5.0477 -2.7242 13 6 1.5193 -4.3238 -3.9002 14 6 1.9117 -4.8992 -5.0928 15 6 2.3705 -6.2099 -5.1118 16 8 2.7521 -6.7799 -6.2833 17 6 3.2948 -8.0123 -6.2161 18 1 3.3344 -8.5342 -5.2714 19 6 3.8021 -8.6097 -7.3599 20 7 4.3320 -9.8121 -7.2943 21 14 3.7330 -7.7074 -8.9941 22 1 4.9683 -6.9016 -9.1671 23 1 3.6261 -8.6931 -10.0996 24 1 2.5499 -6.8102 -9.0145 25 6 2.4386 -6.9360 -3.9300 26 6 2.0506 -6.3529 -2.7398 27 1 -0.3633 0.0007 1.0277 28 1 -0.3634 0.8897 -0.5144 29 1 -0.3634 -0.8903 -0.5133 30 1 2.5167 -3.1803 0.5144 31 1 0.8268 -2.6212 0.5143 32 1 2.4920 -2.9097 -1.9007 33 1 -0.6978 -5.4843 -1.3405 34 1 -0.6612 -3.9921 -0.3713 35 1 -0.7932 -3.8985 -2.1438 36 1 1.1585 -3.3060 -3.8854 37 1 1.8575 -4.3320 -6.0102 38 1 4.6872 -10.2299 -8.0944 39 1 2.7946 -7.9555 -3.9417 40 1 2.1037 -6.9169 -1.8203 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384180771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:43 Heat of formation + Delta-G solvation = 46.625813 kcal Electronic energy + Delta-G solvation = -23178.780325 eV Core-core repulsion = 19699.950407 eV Total energy + Delta-G solvation = -3478.829919 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.90477 -40.96736 -39.19890 -37.21925 -34.75721 -34.34629 -32.24590 -31.76844 -29.66536 -28.91981 -27.80902 -27.24454 -25.40863 -23.76371 -23.29926 -21.33026 -21.19926 -19.73235 -19.60031 -19.10190 -17.48055 -16.98556 -16.67431 -16.27087 -15.77520 -15.68371 -15.49492 -15.37930 -15.21180 -14.61042 -14.33160 -14.27133 -14.10903 -13.90105 -13.82633 -13.71618 -13.22480 -13.10809 -12.99311 -12.82844 -12.54731 -12.38105 -12.29996 -12.08665 -12.01468 -11.60236 -11.27120 -11.08349 -10.89488 -10.67787 -10.49394 -9.78077 -9.40764 -8.97873 -8.50325 -6.22498 -0.77695 0.16454 0.59159 0.64570 0.72769 1.23041 1.31312 1.34799 1.51377 2.27488 2.75952 3.04676 3.12515 3.17313 3.27914 3.68655 3.81289 3.90197 4.10929 4.22100 4.43367 4.47163 4.56599 4.61399 4.66980 4.68736 4.77182 4.79957 4.91553 4.98089 5.03343 5.13223 5.27037 5.29186 5.39934 5.54020 5.57283 5.69225 5.80719 5.92272 6.10825 6.26489 6.34429 6.78912 6.84563 7.60082 8.61256 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.020685 B = 0.002537 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.300761 B =11035.019890 C =11540.259430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.030 3.970 3 N -0.275 5.275 4 N -0.332 5.332 5 S 0.454 5.546 6 C -0.247 4.247 7 C 0.142 3.858 8 N -0.681 5.681 9 C 0.148 3.852 10 H 0.065 0.935 11 C -0.132 4.132 12 C -0.155 4.155 13 C -0.048 4.048 14 C -0.196 4.196 15 C 0.120 3.880 16 O -0.247 6.247 17 C -0.398 4.398 18 H 0.082 0.918 19 C 0.010 3.990 20 N -0.924 5.924 21 Si 0.969 3.031 22 H -0.267 1.267 23 H -0.268 1.268 24 H -0.264 1.264 25 C -0.237 4.237 26 C -0.064 4.064 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.343 0.657 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.150 0.850 37 H 0.122 0.878 38 H 0.284 0.716 39 H 0.106 0.894 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 15.973 18.252 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.116 4.116 3 N -0.141 5.141 4 N -0.310 5.310 5 S 0.590 5.410 6 C -0.386 4.386 7 C 0.012 3.988 8 N -0.313 5.313 9 C 0.039 3.961 10 H 0.083 0.917 11 C -0.190 4.190 12 C -0.156 4.156 13 C -0.066 4.066 14 C -0.215 4.215 15 C 0.071 3.929 16 O -0.155 6.155 17 C -0.474 4.474 18 H 0.100 0.900 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.791 3.209 22 H -0.191 1.191 23 H -0.193 1.193 24 H -0.188 1.188 25 C -0.256 4.256 26 C -0.083 4.083 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.136 0.864 32 H 0.162 0.838 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.167 0.833 37 H 0.140 0.860 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.513 17.286 17.866 25.699 hybrid contribution -0.064 -1.358 -0.724 1.540 sum -6.577 15.929 17.142 24.307 Atomic orbital electron populations 1.20426 0.83142 1.04902 1.04437 1.22662 1.01492 0.86178 1.01253 1.71243 0.97086 1.29565 1.16219 1.78681 1.10799 1.17187 1.24363 1.81363 1.09361 1.00034 1.50206 1.27149 0.98684 1.02700 1.10042 1.20363 1.02692 0.84963 0.90830 1.60649 1.37524 1.20811 1.12360 1.20208 0.96725 0.86629 0.92562 0.91672 1.21780 0.92998 1.01548 1.02693 1.19776 1.05696 0.94367 0.95777 1.20826 0.95878 0.99938 0.89993 1.20539 1.08314 0.92319 1.00311 1.19713 0.94463 0.93208 0.85532 1.83520 1.71773 1.31528 1.28687 1.20705 1.38181 0.90246 0.98252 0.90013 1.25256 0.94947 0.96232 1.02389 1.69726 1.39808 1.15055 1.31861 0.85240 0.79590 0.78451 0.77586 1.19150 1.19280 1.18786 1.21253 1.09725 1.01102 0.93554 1.20936 0.95833 0.94974 0.96516 0.88672 0.90547 0.88100 0.91596 0.86442 0.83802 0.92783 0.90628 0.92579 0.83275 0.85973 0.90606 0.87577 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.01 71.24 0.71 -0.05 16 2 C 0.03 0.52 6.88 41.90 0.29 0.81 16 3 N -0.28 -6.44 11.68 -51.26 -0.60 -7.04 16 4 N -0.33 -7.73 12.54 37.02 0.46 -7.27 16 5 S 0.45 7.17 23.40 -56.49 -1.32 5.85 16 6 C -0.25 -3.51 6.18 25.01 0.15 -3.35 16 7 C 0.14 1.46 5.59 85.56 0.48 1.94 16 8 N -0.68 -9.64 5.68 -499.44 -2.84 -12.47 16 9 C 0.15 2.40 2.81 44.17 0.12 2.52 16 10 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 11 C -0.13 -1.91 9.39 71.98 0.68 -1.24 16 12 C -0.16 -3.90 4.71 -19.83 -0.09 -3.99 16 13 C -0.05 -1.34 9.00 22.25 0.20 -1.14 16 14 C -0.20 -7.14 9.99 22.39 0.22 -6.91 16 15 C 0.12 5.40 6.65 22.58 0.15 5.55 16 16 O -0.25 -13.25 8.59 -22.73 -0.20 -13.45 16 17 C -0.40 -23.12 9.95 67.92 0.68 -22.45 16 18 H 0.08 4.96 5.44 -2.91 -0.02 4.95 16 19 C 0.01 0.58 5.49 84.83 0.47 1.04 16 20 N -0.92 -54.77 13.96 21.61 0.30 -54.46 16 21 Si 0.97 45.20 28.62 68.60 1.96 47.16 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16 25 C -0.24 -9.82 9.17 22.39 0.21 -9.61 16 26 C -0.06 -1.95 9.66 22.25 0.21 -1.74 16 27 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 0.90 7.68 -2.38 -0.02 0.89 16 30 H 0.07 0.54 8.06 -2.38 -0.02 0.52 16 31 H 0.12 0.82 7.06 -2.39 -0.02 0.81 16 32 H 0.34 5.58 7.99 -89.70 -0.72 4.87 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.74 7.45 -2.39 -0.02 0.72 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.15 3.38 7.72 -2.91 -0.02 3.36 16 37 H 0.12 4.24 8.06 -2.92 -0.02 4.22 16 38 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.11 4.92 5.64 -2.91 -0.02 4.90 16 40 H 0.14 3.37 8.03 -2.91 -0.02 3.35 16 Total: -1.00 -69.27 352.95 2.62 -66.66 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.36 Total: 13.64 kcal Atomic # 6 Polarization: -43.10 SS G_CDS: 4.48 Total: -38.62 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -2.67 Total: -81.25 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.20 Total: -13.45 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.96 Total: 47.16 kcal Atomic # 16 Polarization: 7.17 SS G_CDS: -1.32 Total: 5.85 kcal Total: -69.27 2.62 -66.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384180771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.282 kcal (2) G-P(sol) polarization free energy of solvation -69.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds