Wall clock time and date at job start Tue Mar 31 2020 12:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31742 * 123.76529 * 2 1 4 4 N 1.27574 * 118.27368 * 180.30701 * 3 2 1 5 5 S 1.56507 * 109.22248 * 359.73165 * 4 3 2 6 6 C 1.35346 * 123.76844 * 179.81433 * 2 1 3 7 7 C 1.50699 * 127.92659 * 0.02562 * 6 2 1 8 8 N 1.46903 * 109.47069 * 89.70036 * 7 6 2 9 9 C 1.46897 * 110.99445 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47609 * 35.00777 * 9 8 7 11 11 C 1.52999 * 109.47509 * 275.00074 * 9 8 7 12 12 C 1.50706 * 109.46781 * 155.00280 * 9 8 7 13 13 C 1.38303 * 119.92946 * 39.72690 * 12 9 8 14 14 C 1.38097 * 120.06568 * 179.72284 * 13 12 9 15 15 C 1.38882 * 119.93248 * 0.54980 * 14 13 12 16 16 O 1.35749 * 120.06767 * 179.74426 * 15 14 13 17 17 C 1.34839 * 116.99642 * 174.44254 * 16 15 14 18 18 H 1.08000 * 119.99884 * 5.05166 * 17 16 15 19 19 C 1.38648 * 119.99555 * 185.05804 * 17 16 15 20 20 N 1.31554 * 120.00555 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99663 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46945 * 90.00097 * 21 19 17 23 23 H 1.48492 * 109.47215 * 209.99832 * 21 19 17 24 24 H 1.48498 * 109.47316 * 330.00343 * 21 19 17 25 25 C 1.38879 * 119.85985 * 359.72077 * 15 14 13 26 26 C 1.38099 * 119.93320 * 0.02562 * 25 15 14 27 27 H 1.09003 * 109.46880 * 270.18523 * 1 2 3 28 28 H 1.08997 * 109.47486 * 30.19092 * 1 2 3 29 29 H 1.09001 * 109.47122 * 150.19132 * 1 2 3 30 30 H 1.09006 * 109.46600 * 329.70681 * 7 6 2 31 31 H 1.08994 * 109.46980 * 209.70712 * 7 6 2 32 32 H 1.00892 * 110.99767 * 56.05201 * 8 7 6 33 33 H 1.08996 * 109.47712 * 180.02562 * 11 9 8 34 34 H 1.09003 * 109.47260 * 300.00917 * 11 9 8 35 35 H 1.09006 * 109.46897 * 60.00205 * 11 9 8 36 36 H 1.08001 * 119.96163 * 0.02562 * 13 12 9 37 37 H 1.07998 * 120.03445 * 180.26858 * 14 13 12 38 38 H 0.97000 * 120.00177 * 179.97438 * 20 19 17 39 39 H 1.07997 * 120.03451 * 179.97438 * 25 15 14 40 40 H 1.07998 * 119.96758 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2392 1.0952 0.0000 4 7 3.5091 0.9731 -0.0060 5 16 3.8806 -0.5472 -0.0053 6 6 2.2593 -1.1251 0.0036 7 6 1.7860 -2.5558 0.0078 8 7 1.6258 -3.0226 -1.3759 9 6 1.1639 -4.4166 -1.4110 10 1 0.4867 -4.5961 -0.5759 11 6 2.3670 -5.3556 -1.3029 12 6 0.4410 -4.6737 -2.7081 13 6 0.9215 -4.1298 -3.8854 14 6 0.2646 -4.3683 -5.0765 15 6 -0.8862 -5.1458 -5.0896 16 8 -1.5370 -5.3776 -6.2581 17 6 -2.5789 -6.2327 -6.2192 18 1 -2.9124 -6.6348 -5.2739 19 6 -3.2218 -6.5958 -7.3927 20 7 -2.8158 -6.1058 -8.5440 21 14 -4.6647 -7.7810 -7.3389 22 1 -5.9273 -7.0166 -7.1760 23 1 -4.7155 -8.5569 -8.6040 24 1 -4.4984 -8.7117 -6.1937 25 6 -1.3693 -5.6858 -3.9049 26 6 -0.7049 -5.4481 -2.7178 27 1 -0.3633 0.0033 1.0277 28 1 -0.3634 0.8882 -0.5168 29 1 -0.3633 -0.8917 -0.5109 30 1 0.8292 -2.6205 0.5260 31 1 2.5191 -3.1796 0.5191 32 1 2.4832 -2.9123 -1.8962 33 1 2.0243 -6.3899 -1.3294 34 1 3.0442 -5.1760 -2.1379 35 1 2.8899 -5.1696 -0.3647 36 1 1.8142 -3.5220 -3.8739 37 1 0.6427 -3.9469 -5.9962 38 1 -3.2654 -6.3602 -9.3651 39 1 -2.2641 -6.2905 -3.9117 40 1 -1.0798 -5.8681 -1.7962 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384180773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:45 Heat of formation + Delta-G solvation = 43.841590 kcal Electronic energy + Delta-G solvation = -23174.365779 eV Core-core repulsion = 19695.415128 eV Total energy + Delta-G solvation = -3478.950652 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.90757 -40.79716 -39.08624 -37.23363 -34.76800 -34.16903 -32.13600 -31.68605 -29.52727 -28.77597 -27.77524 -27.32645 -25.32513 -23.95020 -23.28796 -21.54414 -21.19737 -19.72205 -19.57596 -18.79892 -17.33360 -16.99015 -16.42270 -16.25104 -15.91894 -15.58899 -15.47903 -15.24856 -15.14226 -14.50335 -14.36685 -14.16086 -14.01026 -13.89121 -13.81329 -13.48447 -13.36090 -13.13830 -12.96407 -12.83941 -12.51906 -12.36441 -12.14421 -12.12737 -11.99704 -11.71384 -11.11439 -11.08270 -10.76835 -10.66219 -10.49591 -9.69445 -9.33355 -8.80609 -8.44497 -6.12337 -0.77295 0.16361 0.68401 0.73015 0.79081 1.22072 1.35926 1.45513 1.53538 2.19649 2.85443 3.10118 3.18255 3.36050 3.58649 3.71697 3.81259 4.03343 4.15826 4.25223 4.40216 4.45317 4.48675 4.57821 4.66812 4.72714 4.75499 4.78860 4.87446 4.94486 5.01565 5.17050 5.20813 5.26022 5.34814 5.38766 5.64611 5.77775 5.81745 6.07064 6.14638 6.32484 6.41159 6.79409 7.00657 7.84102 8.79236 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023935 B = 0.002405 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.536230 B =11637.558490 C =11926.480952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.027 3.973 3 N -0.277 5.277 4 N -0.335 5.335 5 S 0.472 5.528 6 C -0.248 4.248 7 C 0.145 3.855 8 N -0.687 5.687 9 C 0.149 3.851 10 H 0.102 0.898 11 C -0.175 4.175 12 C -0.138 4.138 13 C -0.047 4.047 14 C -0.210 4.210 15 C 0.109 3.891 16 O -0.238 6.238 17 C -0.410 4.410 18 H 0.102 0.898 19 C -0.026 4.026 20 N -0.924 5.924 21 Si 1.018 2.982 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.251 1.251 25 C -0.243 4.243 26 C -0.064 4.064 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.345 0.655 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.138 0.862 37 H 0.103 0.897 38 H 0.271 0.729 39 H 0.116 0.884 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.288 3.650 22.905 25.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.119 4.119 3 N -0.143 5.143 4 N -0.313 5.313 5 S 0.608 5.392 6 C -0.387 4.387 7 C 0.014 3.986 8 N -0.319 5.319 9 C 0.040 3.960 10 H 0.120 0.880 11 C -0.234 4.234 12 C -0.140 4.140 13 C -0.065 4.065 14 C -0.230 4.230 15 C 0.059 3.941 16 O -0.145 6.145 17 C -0.487 4.487 18 H 0.119 0.881 19 C -0.223 4.223 20 N -0.563 5.563 21 Si 0.837 3.163 22 H -0.189 1.189 23 H -0.197 1.197 24 H -0.175 1.175 25 C -0.262 4.262 26 C -0.083 4.083 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.128 0.872 31 H 0.095 0.905 32 H 0.164 0.836 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.156 0.844 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.134 0.866 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.282 5.143 22.418 26.075 hybrid contribution -1.332 -1.145 -0.693 1.888 sum 10.950 3.998 21.726 24.656 Atomic orbital electron populations 1.20382 0.83837 1.04516 1.04301 1.22582 1.01236 0.86566 1.01507 1.71249 0.97171 1.29553 1.16348 1.78627 1.10643 1.17590 1.24460 1.81085 1.08528 0.99642 1.49920 1.27197 0.99045 1.02683 1.09810 1.20329 1.02674 0.84898 0.90709 1.60512 1.37921 1.21086 1.12412 1.20179 0.95786 0.86037 0.94012 0.88047 1.22471 0.97911 1.00510 1.02479 1.19633 0.97442 1.01706 0.95180 1.20644 0.98626 0.96959 0.90285 1.20450 0.96809 1.05933 0.99768 1.19944 0.92394 0.95041 0.86722 1.83943 1.42690 1.58807 1.29073 1.21816 1.07696 1.23257 0.95884 0.88062 1.26592 1.02234 1.00011 0.93438 1.70192 1.42517 1.44745 0.98855 0.84593 0.75898 0.76976 0.78787 1.18872 1.19744 1.17479 1.21225 1.03973 1.07928 0.93052 1.20941 0.94070 0.96661 0.96588 0.88573 0.90907 0.88795 0.87247 0.90513 0.83599 0.92058 0.92641 0.90352 0.84434 0.87854 0.91965 0.86649 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.02 71.24 0.71 -0.37 16 2 C 0.03 0.52 6.89 41.90 0.29 0.81 16 3 N -0.28 -6.88 11.68 -51.25 -0.60 -7.48 16 4 N -0.33 -7.78 12.54 37.02 0.46 -7.31 16 5 S 0.47 6.74 23.40 -56.49 -1.32 5.41 16 6 C -0.25 -3.62 6.18 25.02 0.15 -3.46 16 7 C 0.14 1.48 5.59 85.56 0.48 1.96 16 8 N -0.69 -10.13 5.68 -499.45 -2.84 -12.97 16 9 C 0.15 2.42 2.79 44.17 0.12 2.55 16 10 H 0.10 1.35 7.66 -2.39 -0.02 1.33 16 11 C -0.17 -2.32 9.14 71.98 0.66 -1.66 16 12 C -0.14 -3.72 4.96 -19.83 -0.10 -3.82 16 13 C -0.05 -1.48 9.32 22.25 0.21 -1.27 16 14 C -0.21 -8.91 9.99 22.39 0.22 -8.68 16 15 C 0.11 5.39 6.65 22.58 0.15 5.54 16 16 O -0.24 -14.46 9.76 -22.82 -0.22 -14.68 16 17 C -0.41 -23.97 9.49 67.92 0.64 -23.33 16 18 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 19 C -0.03 -1.48 5.49 84.83 0.47 -1.01 16 20 N -0.92 -57.38 13.67 21.61 0.30 -57.09 16 21 Si 1.02 42.87 29.55 68.60 2.03 44.90 16 22 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 24 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 25 C -0.24 -10.19 9.17 22.39 0.21 -9.99 16 26 C -0.06 -1.99 9.66 22.25 0.21 -1.78 16 27 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 1.42 7.68 -2.39 -0.02 1.40 16 30 H 0.11 0.96 7.69 -2.38 -0.02 0.94 16 31 H 0.08 0.43 7.44 -2.39 -0.02 0.42 16 32 H 0.34 4.78 7.80 -89.70 -0.70 4.08 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 0.81 8.13 -2.39 -0.02 0.79 16 35 H 0.08 0.64 7.45 -2.38 -0.02 0.62 16 36 H 0.14 3.48 7.23 -2.91 -0.02 3.46 16 37 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.12 4.98 5.64 -2.91 -0.02 4.96 16 40 H 0.14 3.36 8.03 -2.91 -0.02 3.33 16 Total: -1.00 -76.61 353.69 2.62 -74.00 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.38 Total: 19.74 kcal Atomic # 6 Polarization: -48.95 SS G_CDS: 4.43 Total: -44.52 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -2.68 Total: -84.85 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.22 Total: -14.68 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 6.74 SS G_CDS: -1.32 Total: 5.41 kcal Total: -76.61 2.62 -74.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384180773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.839 kcal (2) G-P(sol) polarization free energy of solvation -76.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds