Wall clock time and date at job start Tue Mar 31 2020 12:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29415 * 125.69136 * 2 1 4 4 N 1.26395 * 116.47185 * 180.02562 * 3 2 1 5 5 C 1.29410 * 116.47865 * 359.97438 * 4 3 2 6 6 C 1.50706 * 125.70116 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.46763 * 89.95853 * 6 5 4 8 8 C 1.46904 * 110.99888 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.47002 * 325.00655 * 8 7 6 10 10 C 1.53005 * 109.46934 * 85.00291 * 8 7 6 11 11 C 1.50695 * 109.47123 * 205.00280 * 8 7 6 12 12 C 1.38305 * 119.93233 * 319.72137 * 11 8 7 13 13 C 1.38101 * 120.06870 * 179.72259 * 12 11 8 14 14 C 1.38877 * 119.92838 * 0.55988 * 13 12 11 15 15 O 1.35756 * 120.06460 * 179.74488 * 14 13 12 16 16 C 1.34828 * 116.99723 * 174.43510 * 15 14 13 17 17 H 1.08006 * 119.99876 * 5.06023 * 16 15 14 18 18 C 1.38653 * 119.99996 * 185.05287 * 16 15 14 19 19 N 1.31552 * 120.00116 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00014 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47263 * 60.00124 * 20 18 16 22 22 H 1.48499 * 109.47182 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47206 * 300.00312 * 20 18 16 24 24 C 1.38879 * 119.86333 * 359.71485 * 14 13 12 25 25 C 1.38099 * 119.93154 * 0.02562 * 24 14 13 26 26 S 1.71217 * 108.60843 * 0.02562 * 5 4 3 27 27 H 1.09010 * 109.47247 * 90.02628 * 1 2 3 28 28 H 1.08996 * 109.47236 * 210.02194 * 1 2 3 29 29 H 1.08996 * 109.47421 * 330.03015 * 1 2 3 30 30 H 1.08994 * 109.47427 * 209.96314 * 6 5 4 31 31 H 1.09001 * 109.46607 * 329.96510 * 6 5 4 32 32 H 1.00895 * 111.00166 * 56.05299 * 7 6 5 33 33 H 1.09000 * 109.46883 * 300.00190 * 10 8 7 34 34 H 1.08990 * 109.47158 * 60.00049 * 10 8 7 35 35 H 1.08997 * 109.46655 * 180.02562 * 10 8 7 36 36 H 1.08001 * 119.96054 * 0.02562 * 12 11 8 37 37 H 1.08002 * 120.03216 * 180.27545 * 13 12 11 38 38 H 0.96998 * 120.00057 * 180.02562 * 19 18 16 39 39 H 1.08005 * 120.03290 * 179.97438 * 24 14 13 40 40 H 1.08002 * 119.96390 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2620 1.0511 0.0000 4 7 3.5096 0.8486 -0.0005 5 6 3.8936 -0.3873 -0.0004 6 6 5.3232 -0.8640 -0.0004 7 7 5.7880 -1.0179 1.3846 8 6 7.1813 -1.4818 1.4239 9 1 7.3609 -2.1633 0.5924 10 6 8.1222 -0.2805 1.3110 11 6 7.4356 -2.1986 2.7248 12 6 6.9004 -1.7050 3.9007 13 6 7.1269 -2.3628 5.0937 14 6 7.9026 -3.5145 5.1135 15 8 8.1313 -4.1604 6.2855 16 6 8.7941 -5.3327 6.2190 17 1 9.1885 -5.6773 5.2744 18 6 8.9697 -6.0956 7.3634 19 7 8.4891 -5.6760 8.5138 20 14 9.8886 -7.7194 7.2715 21 1 11.2709 -7.4791 6.7851 22 1 9.9385 -8.3369 8.6210 23 1 9.1863 -8.6333 6.3351 24 6 8.4434 -4.0044 3.9318 25 6 8.2088 -3.3451 2.7413 26 16 2.5061 -1.3904 -0.0004 27 1 -0.3634 -0.0005 -1.0277 28 1 -0.3633 -0.8897 0.5141 29 1 -0.3634 0.8902 0.5133 30 1 5.3863 -1.8235 -0.5136 31 1 5.9493 -0.1349 -0.5149 32 1 5.1848 -1.6400 1.9014 33 1 7.9382 0.2379 0.3700 34 1 7.9426 0.4009 2.1424 35 1 9.1559 -0.6249 1.3397 36 1 6.3006 -0.8070 3.8852 37 1 6.7049 -1.9793 6.0110 38 1 8.6122 -6.2096 9.3145 39 1 9.0475 -4.8997 3.9441 40 1 8.6288 -3.7259 1.8220 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000391813312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:56 Heat of formation + Delta-G solvation = 60.658070 kcal Electronic energy + Delta-G solvation = -22862.177408 eV Core-core repulsion = 19383.955973 eV Total energy + Delta-G solvation = -3478.221434 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.50590 -39.28314 -37.70670 -35.84085 -33.62324 -32.36008 -31.51580 -30.23415 -28.99628 -27.98279 -26.29116 -25.42653 -24.31066 -22.37502 -21.83070 -20.23774 -19.90433 -19.53383 -17.97964 -17.13912 -16.30977 -16.18587 -15.36537 -15.01314 -14.74087 -14.54304 -14.22552 -13.93818 -13.70424 -13.61711 -13.54750 -13.33007 -12.92279 -12.82973 -12.70069 -12.46873 -12.35006 -11.88307 -11.70186 -11.43451 -11.22954 -10.81132 -10.71827 -10.66884 -10.47438 -10.43879 -10.39052 -10.00157 -9.86991 -9.38130 -8.86275 -8.59847 -8.21642 -7.23006 -6.48485 -4.07619 0.14548 0.61355 1.08053 2.18151 2.23109 2.33146 3.10378 3.11110 3.14309 3.63439 3.93445 4.08507 4.26054 4.50994 4.56748 4.79672 4.95780 4.98347 5.05705 5.17005 5.24759 5.28014 5.34907 5.37667 5.46561 5.60349 5.64388 5.83149 5.89727 5.97757 6.19121 6.33930 6.42912 6.68358 6.74854 6.90987 6.97339 7.17297 7.27637 7.37926 7.42240 7.78600 7.96188 8.33302 8.96832 9.66734 10.69314 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.020379 B = 0.002377 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.664331 B =11776.972559 C =12398.519677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.020 4.020 3 N -0.263 5.263 4 N -0.243 5.243 5 C -0.006 4.006 6 C 0.138 3.862 7 N -0.676 5.676 8 C 0.146 3.854 9 H 0.046 0.954 10 C -0.134 4.134 11 C -0.196 4.196 12 C -0.055 4.055 13 C -0.195 4.195 14 C 0.156 3.844 15 O -0.176 6.176 16 C -0.393 4.393 17 H 0.091 0.909 18 C 0.040 3.960 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.235 4.235 25 C -0.063 4.063 26 S 0.165 5.835 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.347 0.653 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.271 0.729 39 H 0.127 0.873 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.040 5.937 -18.602 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.299 4.299 3 N -0.102 5.102 4 N -0.080 5.080 5 C -0.286 4.286 6 C 0.005 3.995 7 N -0.309 5.309 8 C 0.037 3.963 9 H 0.064 0.936 10 C -0.192 4.192 11 C -0.198 4.198 12 C -0.073 4.073 13 C -0.214 4.214 14 C 0.102 3.898 15 O -0.079 6.079 16 C -0.469 4.469 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.254 4.254 25 C -0.082 4.082 26 S 0.408 5.592 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.166 0.834 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.144 0.856 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.873 6.927 -18.043 22.175 hybrid contribution 0.420 -1.689 -0.253 1.758 sum -10.452 5.238 -18.296 21.712 Atomic orbital electron populations 1.20387 0.83961 1.04840 1.04268 1.29247 1.04340 0.91875 1.04425 1.71483 0.97051 1.26790 1.14841 1.71406 1.06112 1.17062 1.13425 1.29140 1.02640 0.92414 1.04411 1.20442 0.86148 1.00353 0.92518 1.60588 1.03999 1.55878 1.10452 1.20167 0.86698 0.94617 0.94775 0.93634 1.21793 0.98191 0.97553 1.01636 1.19190 1.07547 0.99114 0.93916 1.20501 0.97745 0.98032 0.91043 1.20253 1.05095 0.97645 0.98405 1.19432 0.92030 0.91921 0.86395 1.83984 1.65907 1.33045 1.25008 1.21277 1.33739 0.95208 0.96703 0.89118 1.25294 0.97518 0.99358 0.94323 1.70025 1.42419 1.38111 0.99073 0.85783 0.79509 0.80180 0.77975 1.19481 1.20246 1.19509 1.21113 1.07863 1.04001 0.92444 1.20565 0.96721 0.94060 0.96817 1.83804 0.98188 1.11936 1.65290 0.89161 0.89613 0.88760 0.92556 0.87546 0.83356 0.93331 0.91773 0.92386 0.86348 0.86564 0.91912 0.85582 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.48 36.00 0.38 -0.03 16 2 C -0.02 -0.19 7.53 -13.30 -0.10 -0.29 16 3 N -0.26 -3.44 11.66 32.58 0.38 -3.06 16 4 N -0.24 -3.33 11.66 32.58 0.38 -2.95 16 5 C -0.01 -0.07 7.04 -13.30 -0.09 -0.16 16 6 C 0.14 1.37 6.08 -4.97 -0.03 1.34 16 7 N -0.68 -8.00 5.68 -109.22 -0.62 -8.63 16 8 C 0.15 1.83 2.81 -68.86 -0.19 1.63 16 9 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 10 C -0.13 -1.61 9.39 37.16 0.35 -1.26 16 11 C -0.20 -3.13 4.71 -104.58 -0.49 -3.62 16 12 C -0.05 -0.95 9.00 -39.61 -0.36 -1.31 16 13 C -0.19 -4.04 9.99 -39.40 -0.39 -4.44 16 14 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 15 O -0.18 -4.97 9.76 0.04 0.00 -4.97 16 16 C -0.39 -10.83 9.49 30.89 0.29 -10.53 16 17 H 0.09 2.30 5.20 -52.48 -0.27 2.02 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.06 13.67 55.48 0.76 -24.30 16 20 Si 0.94 20.21 29.55 -169.99 -5.02 15.19 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 C -0.23 -4.92 9.17 -39.40 -0.36 -5.28 16 25 C -0.06 -1.08 9.66 -39.61 -0.38 -1.47 16 26 S 0.16 1.42 23.04 -107.50 -2.48 -1.06 16 27 H 0.09 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.46 8.06 -51.93 -0.42 0.04 16 31 H 0.11 1.03 7.44 -51.93 -0.39 0.65 16 32 H 0.35 4.24 7.99 -39.29 -0.31 3.92 16 33 H 0.05 0.51 7.45 -51.93 -0.39 0.12 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.12 1.88 7.72 -52.49 -0.41 1.47 16 37 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.13 2.66 5.64 -52.48 -0.30 2.36 16 40 H 0.11 1.53 8.03 -52.49 -0.42 1.10 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -32.06 356.11 -7.95 -40.01 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -4.97 Total: 5.41 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -1.74 Total: -21.01 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.90 Total: -38.93 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: 0.00 Total: -4.97 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.48 Total: -1.06 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.06 -7.95 -40.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391813312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.664 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds