Wall clock time and date at job start Tue Mar 31 2020 12:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29415 * 125.69136 * 2 1 4 4 N 1.26395 * 116.47185 * 180.02562 * 3 2 1 5 5 C 1.29410 * 116.47865 * 359.97438 * 4 3 2 6 6 C 1.50706 * 125.70116 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.46763 * 89.95853 * 6 5 4 8 8 C 1.46904 * 110.99888 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.47002 * 325.00655 * 8 7 6 10 10 C 1.53005 * 109.46934 * 85.00291 * 8 7 6 11 11 C 1.50695 * 109.47123 * 205.00280 * 8 7 6 12 12 C 1.38305 * 119.93233 * 319.72137 * 11 8 7 13 13 C 1.38101 * 120.06870 * 179.72259 * 12 11 8 14 14 C 1.38877 * 119.92838 * 0.55988 * 13 12 11 15 15 O 1.35756 * 120.06460 * 179.74488 * 14 13 12 16 16 C 1.34828 * 116.99723 * 174.43510 * 15 14 13 17 17 H 1.08006 * 119.99876 * 5.06023 * 16 15 14 18 18 C 1.38653 * 119.99996 * 185.05287 * 16 15 14 19 19 N 1.31552 * 120.00116 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00014 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47263 * 60.00124 * 20 18 16 22 22 H 1.48499 * 109.47182 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47206 * 300.00312 * 20 18 16 24 24 C 1.38879 * 119.86333 * 359.71485 * 14 13 12 25 25 C 1.38099 * 119.93154 * 0.02562 * 24 14 13 26 26 S 1.71217 * 108.60843 * 0.02562 * 5 4 3 27 27 H 1.09010 * 109.47247 * 90.02628 * 1 2 3 28 28 H 1.08996 * 109.47236 * 210.02194 * 1 2 3 29 29 H 1.08996 * 109.47421 * 330.03015 * 1 2 3 30 30 H 1.08994 * 109.47427 * 209.96314 * 6 5 4 31 31 H 1.09001 * 109.46607 * 329.96510 * 6 5 4 32 32 H 1.00895 * 111.00166 * 56.05299 * 7 6 5 33 33 H 1.09000 * 109.46883 * 300.00190 * 10 8 7 34 34 H 1.08990 * 109.47158 * 60.00049 * 10 8 7 35 35 H 1.08997 * 109.46655 * 180.02562 * 10 8 7 36 36 H 1.08001 * 119.96054 * 0.02562 * 12 11 8 37 37 H 1.08002 * 120.03216 * 180.27545 * 13 12 11 38 38 H 0.96998 * 120.00057 * 180.02562 * 19 18 16 39 39 H 1.08005 * 120.03290 * 179.97438 * 24 14 13 40 40 H 1.08002 * 119.96390 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2620 1.0511 0.0000 4 7 3.5096 0.8486 -0.0005 5 6 3.8936 -0.3873 -0.0004 6 6 5.3232 -0.8640 -0.0004 7 7 5.7880 -1.0179 1.3846 8 6 7.1813 -1.4818 1.4239 9 1 7.3609 -2.1633 0.5924 10 6 8.1222 -0.2805 1.3110 11 6 7.4356 -2.1986 2.7248 12 6 6.9004 -1.7050 3.9007 13 6 7.1269 -2.3628 5.0937 14 6 7.9026 -3.5145 5.1135 15 8 8.1313 -4.1604 6.2855 16 6 8.7941 -5.3327 6.2190 17 1 9.1885 -5.6773 5.2744 18 6 8.9697 -6.0956 7.3634 19 7 8.4891 -5.6760 8.5138 20 14 9.8886 -7.7194 7.2715 21 1 11.2709 -7.4791 6.7851 22 1 9.9385 -8.3369 8.6210 23 1 9.1863 -8.6333 6.3351 24 6 8.4434 -4.0044 3.9318 25 6 8.2088 -3.3451 2.7413 26 16 2.5061 -1.3904 -0.0004 27 1 -0.3634 -0.0005 -1.0277 28 1 -0.3633 -0.8897 0.5141 29 1 -0.3634 0.8902 0.5133 30 1 5.3863 -1.8235 -0.5136 31 1 5.9493 -0.1349 -0.5149 32 1 5.1848 -1.6400 1.9014 33 1 7.9382 0.2379 0.3700 34 1 7.9426 0.4009 2.1424 35 1 9.1559 -0.6249 1.3397 36 1 6.3006 -0.8070 3.8852 37 1 6.7049 -1.9793 6.0110 38 1 8.6122 -6.2096 9.3145 39 1 9.0475 -4.8997 3.9441 40 1 8.6288 -3.7259 1.8220 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000391813312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:55 Heat of formation + Delta-G solvation = 38.664511 kcal Electronic energy + Delta-G solvation = -22863.131120 eV Core-core repulsion = 19383.955973 eV Total energy + Delta-G solvation = -3479.175147 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.31506 -40.88476 -39.13296 -37.14842 -34.55991 -34.13878 -32.50459 -31.78853 -29.92927 -29.29191 -27.37225 -27.04114 -25.12415 -23.84238 -23.26755 -21.40088 -20.86330 -20.30178 -19.76824 -18.84354 -17.43224 -17.05449 -16.57470 -16.30881 -15.88325 -15.76522 -15.61589 -15.43729 -15.17246 -14.66357 -14.37427 -14.36275 -14.01411 -13.89870 -13.82775 -13.51057 -13.50179 -13.24278 -12.98935 -12.80580 -12.54682 -12.34457 -12.24110 -12.14059 -11.67435 -11.45162 -11.19863 -11.15730 -10.78368 -10.75660 -10.60790 -9.77242 -9.47950 -8.91734 -8.46463 -6.14858 -0.58124 -0.08042 0.33413 0.60737 0.67927 1.35549 1.46097 1.49889 1.51922 2.18332 2.79690 2.91396 3.16126 3.27486 3.52005 3.57564 3.86625 3.89754 4.10836 4.17307 4.22993 4.41001 4.50213 4.56666 4.58977 4.61161 4.63190 4.74726 4.76111 4.94523 5.00551 5.06305 5.12821 5.15225 5.29334 5.46412 5.56603 5.66626 5.72165 6.03138 6.05805 6.22868 6.28889 6.98109 7.54622 7.79488 8.76633 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.020379 B = 0.002377 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.664331 B =11776.972559 C =12398.519677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.022 4.022 3 N -0.306 5.306 4 N -0.280 5.280 5 C -0.023 4.023 6 C 0.141 3.859 7 N -0.686 5.686 8 C 0.151 3.849 9 H 0.073 0.927 10 C -0.133 4.133 11 C -0.165 4.165 12 C -0.047 4.047 13 C -0.207 4.207 14 C 0.115 3.885 15 O -0.234 6.234 16 C -0.413 4.413 17 H 0.103 0.897 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.256 1.256 24 C -0.241 4.241 25 C -0.057 4.057 26 S 0.217 5.783 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.345 0.655 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.138 0.862 37 H 0.107 0.893 38 H 0.272 0.728 39 H 0.120 0.880 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.436 5.269 -22.256 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.301 4.301 3 N -0.144 5.144 4 N -0.118 5.118 5 C -0.304 4.304 6 C 0.008 3.992 7 N -0.320 5.320 8 C 0.043 3.957 9 H 0.091 0.909 10 C -0.191 4.191 11 C -0.166 4.166 12 C -0.065 4.065 13 C -0.227 4.227 14 C 0.065 3.935 15 O -0.140 6.140 16 C -0.489 4.489 17 H 0.121 0.879 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.181 1.181 22 H -0.198 1.198 23 H -0.180 1.180 24 C -0.261 4.261 25 C -0.075 4.075 26 S 0.460 5.540 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.164 0.836 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.155 0.845 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.283 6.298 -21.761 25.308 hybrid contribution 0.354 -1.246 0.584 1.421 sum -10.929 5.052 -21.177 24.360 Atomic orbital electron populations 1.20631 0.81378 1.05900 1.05815 1.29901 1.06024 0.91839 1.02315 1.71444 0.97319 1.28544 1.17102 1.71352 1.06871 1.18779 1.14768 1.29327 1.04004 0.92548 1.04471 1.20516 0.85623 1.01663 0.91372 1.60521 1.03513 1.55885 1.12043 1.20183 0.87442 0.95016 0.93108 0.90887 1.21782 0.98181 0.97046 1.02078 1.19674 1.04064 0.97706 0.95127 1.20717 0.97413 0.98104 0.90311 1.20442 1.05168 0.97427 0.99641 1.19951 0.93953 0.93026 0.86583 1.83950 1.68383 1.34223 1.27461 1.21795 1.33954 0.95606 0.97561 0.87926 1.26609 0.98484 1.03452 0.93620 1.70183 1.45468 1.40307 1.00070 0.84647 0.78378 0.74870 0.78327 1.18122 1.19811 1.18019 1.21241 1.07669 1.04213 0.92927 1.20953 0.96043 0.93713 0.96829 1.83566 0.96206 1.10132 1.64063 0.87213 0.87483 0.88737 0.89920 0.87271 0.83604 0.91387 0.93406 0.92007 0.84469 0.87516 0.91874 0.86188 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.48 71.23 0.75 0.09 16 2 C -0.02 -0.38 7.53 88.46 0.67 0.28 16 3 N -0.31 -7.72 11.66 -50.85 -0.59 -8.31 16 4 N -0.28 -7.40 11.66 -50.85 -0.59 -7.99 16 5 C -0.02 -0.47 7.04 88.47 0.62 0.15 16 6 C 0.14 2.30 6.08 85.56 0.52 2.82 16 7 N -0.69 -13.89 5.68 -499.45 -2.84 -16.73 16 8 C 0.15 3.13 2.81 44.17 0.12 3.25 16 9 H 0.07 1.21 7.66 -2.39 -0.02 1.19 16 10 C -0.13 -2.70 9.39 71.98 0.68 -2.03 16 11 C -0.16 -4.73 4.71 -19.84 -0.09 -4.82 16 12 C -0.05 -1.57 9.00 22.25 0.20 -1.37 16 13 C -0.21 -8.85 9.99 22.39 0.22 -8.62 16 14 C 0.12 5.66 6.65 22.58 0.15 5.81 16 15 O -0.23 -14.02 9.76 -22.79 -0.22 -14.24 16 16 C -0.41 -23.82 9.49 67.92 0.64 -23.17 16 17 H 0.10 5.36 5.20 -2.91 -0.02 5.35 16 18 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 19 N -0.92 -56.64 13.67 21.61 0.30 -56.34 16 20 Si 1.02 42.30 29.55 68.60 2.03 44.32 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 24 C -0.24 -10.04 9.17 22.39 0.21 -9.84 16 25 C -0.06 -1.79 9.66 22.25 0.21 -1.58 16 26 S 0.22 3.14 23.04 -56.49 -1.30 1.84 16 27 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.94 8.06 -2.39 -0.02 0.92 16 31 H 0.11 1.74 7.44 -2.39 -0.02 1.72 16 32 H 0.34 7.29 7.99 -89.70 -0.72 6.57 16 33 H 0.07 1.16 7.45 -2.39 -0.02 1.14 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.14 4.10 7.72 -2.91 -0.02 4.08 16 37 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 38 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.12 5.07 5.64 -2.91 -0.02 5.06 16 40 H 0.15 3.46 8.03 -2.91 -0.02 3.44 16 Total: -1.00 -75.91 356.11 2.50 -73.41 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.36 Total: 23.98 kcal Atomic # 6 Polarization: -45.30 SS G_CDS: 5.37 Total: -39.93 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -3.73 Total: -89.38 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.22 Total: -14.24 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.30 Total: 1.84 kcal Total: -75.91 2.50 -73.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391813312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.074 kcal (2) G-P(sol) polarization free energy of solvation -75.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds