Wall clock time and date at job start Tue Mar 31 2020 12:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 S 1.75358 * 124.30394 * 2 1 4 4 C 1.75745 * 92.18397 * 180.02562 * 3 2 1 5 5 N 1.33926 * 131.28105 * 179.97438 * 4 3 2 6 6 C 1.31261 * 121.04396 * 180.02562 * 5 4 3 7 7 C 1.50698 * 118.90707 * 180.02562 * 6 5 4 8 8 N 1.32105 * 122.18149 * 359.97438 * 6 5 4 9 9 C 1.32451 * 121.19006 * 0.02562 * 8 6 5 10 10 N 1.38322 * 120.52862 * 179.97438 * 9 8 6 11 11 C 1.47477 * 111.00238 * 264.02336 * 10 9 8 12 12 C 1.53511 * 87.92932 * 138.70591 * 11 10 9 13 13 O 1.42903 * 114.16858 * 87.62877 * 12 11 10 14 14 C 1.50702 * 114.17029 * 220.32892 * 12 11 10 15 15 H 1.08007 * 119.99877 * 93.84657 * 14 12 11 16 16 C 1.37879 * 120.00232 * 273.84351 * 14 12 11 17 17 N 1.31512 * 119.99895 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99737 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47310 * 90.00267 * 18 16 14 20 20 H 1.48505 * 109.46624 * 209.99993 * 18 16 14 21 21 H 1.48494 * 109.47177 * 329.99673 * 18 16 14 22 22 C 1.47478 * 111.00517 * 0.02562 * 10 9 8 23 23 C 1.39729 * 109.61584 * 359.75413 * 4 3 2 24 24 C 1.31886 * 124.30908 * 180.02562 * 2 1 3 25 25 C 1.50703 * 122.59333 * 359.93896 * 24 2 1 26 26 H 1.09006 * 109.46974 * 269.95802 * 1 2 3 27 27 H 1.08994 * 109.47336 * 29.96052 * 1 2 3 28 28 H 1.08997 * 109.46817 * 149.95826 * 1 2 3 29 29 H 1.09004 * 109.47391 * 90.00022 * 7 6 5 30 30 H 1.09000 * 109.47186 * 210.00201 * 7 6 5 31 31 H 1.09001 * 109.47228 * 330.00052 * 7 6 5 32 32 H 1.09001 * 113.48122 * 253.47358 * 11 10 9 33 33 H 1.09002 * 113.47187 * 23.94058 * 11 10 9 34 34 H 0.96703 * 114.00179 * 86.15747 * 13 12 11 35 35 H 0.96998 * 119.99729 * 180.02562 * 17 16 14 36 36 H 1.09001 * 113.46905 * 336.06032 * 22 10 9 37 37 H 1.09003 * 113.47649 * 106.52483 * 22 10 9 38 38 H 1.09002 * 109.47152 * 90.02528 * 25 24 2 39 39 H 1.09001 * 109.46980 * 330.02628 * 25 24 2 40 40 H 1.09004 * 109.47113 * 210.02609 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.4953 1.4486 0.0000 4 6 3.9838 0.5141 -0.0008 5 7 5.2672 0.8967 -0.0016 6 6 6.2372 0.0123 -0.0026 7 6 7.6643 0.4964 -0.0029 8 7 6.0038 -1.2879 -0.0023 9 6 4.7674 -1.7629 -0.0015 10 7 4.5388 -3.1271 -0.0018 11 6 4.3090 -3.6243 -1.3711 12 6 5.1755 -4.8405 -1.0151 13 8 4.4523 -5.9203 -0.4209 14 6 6.1063 -5.2785 -2.1165 15 1 7.1224 -4.9133 -2.1418 16 6 5.6607 -6.1454 -3.0916 17 7 4.4233 -6.5897 -3.0610 18 14 6.8148 -6.6888 -4.4563 19 1 7.5306 -7.9208 -4.0380 20 1 6.0307 -6.9655 -5.6867 21 1 7.8004 -5.6121 -4.7291 22 6 5.8092 -3.8760 -0.0024 23 6 3.6813 -0.8500 0.0046 24 6 2.2504 -1.0894 -0.0005 25 6 1.6592 -2.4756 0.0002 26 1 -0.3633 -0.0008 1.0277 27 1 -0.3634 0.8903 -0.5132 28 1 -0.3633 -0.8896 -0.5145 29 1 8.0089 0.6125 1.0247 30 1 8.2941 -0.2294 -0.5175 31 1 7.7223 1.4563 -0.5161 32 1 3.2679 -3.8768 -1.5724 33 1 4.7464 -2.9902 -2.1423 34 1 4.0541 -6.5263 -1.0607 35 1 4.1100 -7.1999 -3.7468 36 1 6.6471 -3.3092 -0.4082 37 1 6.0392 -4.3418 0.9560 38 1 1.5162 -2.8102 -1.0273 39 1 0.6983 -2.4605 0.5145 40 1 2.3356 -3.1588 0.5140 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408442657.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:18 Heat of formation + Delta-G solvation = 59.273321 kcal Electronic energy + Delta-G solvation = -24981.852032 eV Core-core repulsion = 21503.570551 eV Total energy + Delta-G solvation = -3478.281481 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.31711 -39.15909 -37.24468 -34.86295 -32.92946 -32.34926 -32.10431 -29.82078 -28.50244 -28.14732 -25.87428 -25.13866 -24.49936 -23.27296 -21.50621 -19.29280 -18.95326 -18.01355 -17.57955 -16.85490 -16.03473 -15.55635 -15.19500 -15.08314 -14.53230 -14.13065 -13.89927 -13.81889 -13.44978 -13.23887 -12.84392 -12.64716 -12.53524 -12.43411 -12.31185 -12.19287 -11.95079 -11.66842 -11.53506 -11.15464 -11.05227 -10.98691 -10.78692 -10.71126 -10.52849 -10.32039 -10.05338 -9.54090 -9.07648 -8.93113 -8.74100 -8.47606 -8.20997 -7.72847 -6.38788 -4.47866 0.57366 1.11555 1.20496 1.90284 2.23507 3.15021 3.22757 3.25998 3.73887 3.97879 4.14779 4.20545 4.55492 4.66996 4.85390 4.90328 5.08117 5.25590 5.38417 5.43404 5.57599 5.60787 5.66975 5.70545 5.76601 5.85381 5.90178 5.96906 6.03618 6.10193 6.15989 6.28047 6.36003 6.60868 6.65566 6.72645 6.78456 7.17140 7.21090 7.65366 7.68200 7.84813 8.27672 8.55459 9.22730 9.52292 10.67800 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014787 B = 0.004562 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.152466 B = 6136.095127 C = 7239.195488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.197 4.197 3 S 0.137 5.863 4 C 0.104 3.896 5 N -0.518 5.518 6 C 0.351 3.649 7 C -0.081 4.081 8 N -0.553 5.553 9 C 0.396 3.604 10 N -0.428 5.428 11 C 0.002 3.998 12 C 0.251 3.749 13 O -0.568 6.568 14 C -0.532 4.532 15 H 0.071 0.929 16 C 0.072 3.928 17 N -0.898 5.898 18 Si 0.906 3.094 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.271 1.271 22 C 0.015 3.985 23 C -0.182 4.182 24 C -0.041 4.041 25 C -0.107 4.107 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.392 0.608 35 H 0.273 0.727 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 12.004 4.184 13.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.312 4.312 3 S 0.396 5.604 4 C -0.147 4.147 5 N -0.238 5.238 6 C 0.079 3.921 7 C -0.139 4.139 8 N -0.274 5.274 9 C 0.149 3.851 10 N -0.147 5.147 11 C -0.124 4.124 12 C 0.209 3.791 13 O -0.380 6.380 14 C -0.570 4.570 15 H 0.089 0.911 16 C -0.130 4.130 17 N -0.539 5.539 18 Si 0.733 3.267 19 H -0.201 1.201 20 H -0.209 1.209 21 H -0.196 1.196 22 C -0.112 4.112 23 C -0.198 4.198 24 C -0.053 4.053 25 C -0.165 4.165 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.248 0.752 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.489 13.964 5.145 15.544 hybrid contribution 0.371 -1.860 -1.692 2.542 sum -4.119 12.105 3.452 13.244 Atomic orbital electron populations 1.20325 0.87178 1.03274 1.02781 1.23680 1.00124 0.95077 1.12333 1.83871 0.91180 1.06638 1.78706 1.23658 0.97166 0.94101 0.99762 1.67836 0.97465 1.38905 1.19600 1.23026 0.95940 0.84187 0.88988 1.20550 0.87444 1.02168 1.03774 1.68258 1.22239 1.16556 1.20384 1.21056 0.86378 0.93349 0.84283 1.66204 1.25882 0.97626 1.24969 1.24964 1.03526 0.99256 0.84691 1.19391 0.87565 0.83285 0.88834 1.86054 1.72147 1.40544 1.39271 1.21521 0.98745 1.28228 1.08555 0.91109 1.25069 0.95256 0.94848 0.97844 1.69269 1.15526 1.33183 1.35889 0.86356 0.80530 0.79245 0.80571 1.20142 1.20915 1.19601 1.24222 0.91380 0.94081 1.01544 1.20117 0.94716 0.93542 1.11387 1.19345 0.89684 0.96958 0.99281 1.20818 1.00882 0.91753 1.03089 0.90696 0.91313 0.90090 0.89645 0.89267 0.89767 0.89829 0.91564 0.75173 0.91650 0.88082 0.90468 0.90716 0.91668 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 9.66 36.01 0.35 -0.40 16 2 C -0.20 -2.68 6.38 -36.21 -0.23 -2.91 16 3 S 0.14 1.90 23.20 -107.50 -2.49 -0.59 16 4 C 0.10 1.83 7.69 -16.08 -0.12 1.71 16 5 N -0.52 -9.22 10.36 -9.47 -0.10 -9.32 16 6 C 0.35 6.05 7.64 -157.38 -1.20 4.85 16 7 C -0.08 -1.00 10.31 36.00 0.37 -0.63 16 8 N -0.55 -10.71 8.20 -9.59 -0.08 -10.79 16 9 C 0.40 7.97 5.91 -154.58 -0.91 7.05 16 10 N -0.43 -8.96 4.39 -181.80 -0.80 -9.75 16 11 C 0.00 0.03 6.44 -7.49 -0.05 -0.01 16 12 C 0.25 6.08 1.57 -91.22 -0.14 5.94 16 13 O -0.57 -14.44 13.54 -35.23 -0.48 -14.92 16 14 C -0.53 -13.65 8.69 -34.44 -0.30 -13.95 16 15 H 0.07 1.80 7.81 -52.48 -0.41 1.39 16 16 C 0.07 1.82 5.40 -17.82 -0.10 1.72 16 17 N -0.90 -22.89 11.02 55.43 0.61 -22.28 16 18 Si 0.91 19.76 29.54 -169.99 -5.02 14.74 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 C 0.02 0.33 6.81 -7.47 -0.05 0.28 16 23 C -0.18 -3.39 6.05 -105.24 -0.64 -4.03 16 24 C -0.04 -0.66 5.96 -103.82 -0.62 -1.28 16 25 C -0.11 -1.61 8.10 36.01 0.29 -1.32 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.73 7.20 -51.93 -0.37 0.36 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.84 6.74 -51.93 -0.35 1.49 16 33 H 0.07 1.53 7.85 -51.93 -0.41 1.12 16 34 H 0.39 10.12 6.34 45.56 0.29 10.41 16 35 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 36 H 0.10 2.20 6.65 -51.93 -0.35 1.85 16 37 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 38 H 0.07 1.13 7.37 -51.93 -0.38 0.75 16 39 H 0.06 0.80 7.15 -51.93 -0.37 0.43 16 40 H 0.10 1.72 6.28 -51.93 -0.33 1.39 16 LS Contribution 338.73 15.07 5.10 5.10 Total: -1.00 -27.99 338.73 -10.96 -38.95 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -4.35 Total: 11.82 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -3.35 Total: -2.96 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.36 Total: -52.14 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.48 Total: -14.92 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.49 Total: -0.59 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.99 -10.96 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408442657.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.222 kcal (2) G-P(sol) polarization free energy of solvation -27.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds