Wall clock time and date at job start Tue Mar 31 2020 12:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00040 * 2 1 4 4 C 1.52997 * 109.47156 * 125.00060 * 3 2 1 5 5 C 1.53002 * 109.47387 * 65.00118 * 4 3 2 6 6 C 1.50704 * 109.46949 * 61.89963 * 5 4 3 7 7 C 1.30996 * 119.99888 * 118.68371 * 6 5 4 8 8 C 1.50694 * 109.47636 * 185.00011 * 4 3 2 9 9 O 1.21287 * 119.99759 * 330.19744 * 8 4 3 10 10 N 1.34774 * 120.00564 * 150.18720 * 8 4 3 11 11 C 1.39148 * 120.00326 * 178.64656 * 10 8 4 12 12 C 1.38606 * 120.21194 * 21.26378 * 11 10 8 13 13 C 1.38190 * 120.17409 * 179.97438 * 12 11 10 14 14 C 1.39003 * 120.60315 * 0.02562 * 13 12 11 15 15 Cl 1.73596 * 119.78963 * 180.02562 * 14 13 12 16 16 C 1.37543 * 120.41938 * 359.73934 * 14 13 12 17 17 C 1.40742 * 119.80999 * 0.49453 * 16 14 13 18 18 C 1.41070 * 120.29254 * 179.78623 * 17 16 14 19 19 H 1.08000 * 120.00194 * 158.25369 * 18 17 16 20 20 C 1.39953 * 119.99964 * 338.52436 * 18 17 16 21 21 N 1.30860 * 120.00151 * 335.03483 * 20 18 17 22 22 Si 1.86796 * 120.00001 * 155.02991 * 20 18 17 23 23 H 1.48494 * 109.47075 * 60.00265 * 22 20 18 24 24 H 1.48499 * 109.47058 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47198 * 299.99984 * 22 20 18 26 26 H 1.08000 * 119.99665 * 179.97438 * 1 2 3 27 27 H 1.07994 * 119.99651 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00269 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47149 * 4.99966 * 3 2 1 30 30 H 1.09002 * 109.47338 * 244.99546 * 3 2 1 31 31 H 1.09003 * 109.47186 * 305.00245 * 4 3 2 32 32 H 1.08997 * 109.47634 * 181.90048 * 5 4 3 33 33 H 1.09001 * 109.47091 * 301.90222 * 5 4 3 34 34 H 1.08000 * 119.99920 * 298.68009 * 6 5 4 35 35 H 1.08003 * 120.00043 * 179.97438 * 7 6 5 36 36 H 1.08000 * 120.00037 * 0.02562 * 7 6 5 37 37 H 0.97001 * 119.99803 * 358.65194 * 10 8 4 38 38 H 1.08003 * 119.90884 * 359.97251 * 12 11 10 39 39 H 1.07998 * 119.69728 * 180.02562 * 13 12 11 40 40 H 1.07997 * 120.09314 * 180.25497 * 16 14 13 41 41 H 0.96999 * 119.99994 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 4.0999 0.2509 0.9921 6 6 4.8866 0.5345 -0.2616 7 6 6.1757 0.7560 -0.1899 8 6 3.6991 2.6839 1.2542 9 8 3.8773 3.3272 0.2416 10 7 4.0948 3.1773 2.4443 11 6 4.7333 4.4120 2.5081 12 6 4.5860 5.3274 1.4778 13 6 5.2200 6.5536 1.5422 14 6 6.0113 6.8845 2.6361 15 17 6.7975 8.4310 2.6954 16 6 6.1706 5.9966 3.6744 17 6 5.5369 4.7409 3.6247 18 6 5.6969 3.8207 4.6819 19 1 4.9701 3.0357 4.8293 20 6 6.7947 3.9286 5.5434 21 7 7.8922 4.5125 5.1347 22 14 6.6931 3.2393 7.2765 23 1 6.4284 1.7795 7.2138 24 1 7.9780 3.4801 7.9810 25 1 5.5920 3.9109 8.0127 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5399 0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6214 1.4026 -0.9313 31 1 2.4883 1.1468 2.1060 32 1 4.7722 0.2484 1.8501 33 1 3.6173 -0.7226 0.9058 34 1 4.3876 0.5550 -1.2192 35 1 6.7396 0.9587 -1.0885 36 1 6.6748 0.7350 0.7676 37 1 3.9346 2.6716 3.2564 38 1 3.9741 5.0816 0.6225 39 1 5.0996 7.2612 0.7353 40 1 6.7833 6.2608 4.5236 41 1 8.6529 4.5876 5.7319 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410963569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:01 Heat of formation + Delta-G solvation = 5.777871 kcal Electronic energy + Delta-G solvation = -24216.533595 eV Core-core repulsion = 20701.595920 eV Total energy + Delta-G solvation = -3514.937676 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.02048 -37.79244 -36.25855 -35.39912 -34.00647 -33.85779 -33.57009 -30.94946 -29.85309 -28.23576 -26.27848 -25.53196 -23.77776 -21.74663 -20.69687 -20.27237 -19.53308 -18.69435 -17.55776 -16.84928 -16.32696 -15.59792 -15.28612 -15.00188 -14.73846 -14.57094 -13.96412 -13.70757 -13.28964 -13.10301 -13.01365 -12.84379 -12.29741 -12.16126 -12.00260 -11.80966 -11.66048 -11.53605 -11.26469 -11.05567 -10.97498 -10.81568 -10.75712 -10.58262 -10.36327 -10.20078 -9.71447 -9.42410 -9.31452 -9.14633 -9.14188 -8.58628 -7.65885 -7.07894 -6.83375 -4.48911 2.17572 2.42516 2.55584 2.72504 2.95699 2.96579 3.10812 3.34437 3.36662 3.76205 3.86811 4.40613 4.81247 4.83856 4.95977 5.13679 5.18450 5.38809 5.41518 5.48255 5.53661 5.69733 5.83314 5.88307 6.03526 6.12222 6.23196 6.34811 6.42931 6.54457 6.68629 6.71809 6.84246 6.86575 6.97616 7.00821 7.04637 7.30881 7.52951 7.72410 7.80022 7.91658 8.24389 8.35551 8.62827 8.65482 8.94488 9.94064 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.004389 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.661547 B = 6377.934996 C = 7819.890704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.147 4.147 3 C -0.078 4.078 4 C -0.095 4.095 5 C -0.081 4.081 6 C -0.154 4.154 7 C -0.181 4.181 8 C 0.504 3.496 9 O -0.532 6.532 10 N -0.635 5.635 11 C 0.020 3.980 12 C -0.092 4.092 13 C -0.225 4.225 14 C -0.008 4.008 15 Cl -0.127 7.127 16 C -0.158 4.158 17 C 0.110 3.890 18 C -0.464 4.464 19 H 0.078 0.922 20 C 0.083 3.917 21 N -0.771 5.771 22 Si 0.904 3.096 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.261 1.261 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.403 0.597 38 H 0.140 0.860 39 H 0.100 0.900 40 H 0.128 0.872 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.385 -8.620 -3.433 11.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.165 4.165 3 C -0.115 4.115 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.172 4.172 7 C -0.217 4.217 8 C 0.291 3.709 9 O -0.410 6.410 10 N -0.276 5.276 11 C -0.074 4.074 12 C -0.112 4.112 13 C -0.246 4.246 14 C -0.035 4.035 15 Cl -0.099 7.099 16 C -0.179 4.179 17 C 0.106 3.894 18 C -0.492 4.492 19 H 0.096 0.904 20 C -0.138 4.138 21 N -0.394 5.394 22 Si 0.728 3.272 23 H -0.189 1.189 24 H -0.201 1.201 25 H -0.186 1.186 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.128 0.872 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.126 0.874 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.238 0.762 38 H 0.157 0.843 39 H 0.118 0.882 40 H 0.145 0.855 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.940 -8.010 -4.073 11.354 hybrid contribution 0.236 -0.353 1.292 1.360 sum -6.704 -8.363 -2.782 11.074 Atomic orbital electron populations 1.23844 0.95992 1.01692 1.02092 1.23011 0.95892 0.98550 0.99066 1.20617 0.97235 0.95091 0.98575 1.21226 0.96691 0.93308 1.00469 1.20698 0.96688 0.97491 0.97017 1.22725 0.95584 1.00670 0.98239 1.23816 0.96422 0.99711 1.01774 1.20399 0.79741 0.87361 0.83399 1.90530 1.55863 1.59654 1.34948 1.42974 1.56200 1.19540 1.08836 1.17753 1.05559 0.86076 0.98046 1.21115 0.99729 0.91559 0.98789 1.20175 1.06616 0.98649 0.99126 1.20753 0.99193 0.85574 0.97994 1.98250 1.80902 1.32102 1.98641 1.20896 1.05918 0.92435 0.98640 1.17160 0.89518 0.91931 0.90766 1.19168 1.07363 1.12572 1.10142 0.90354 1.25878 0.94012 0.93790 1.00147 1.69854 1.01695 1.31464 1.36368 0.86424 0.78869 0.80189 0.81738 1.18879 1.20145 1.18555 0.88706 0.88634 0.87243 0.91222 0.89482 0.89325 0.90855 0.90196 0.87432 0.88801 0.88635 0.76184 0.84301 0.88162 0.85462 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.79 14.32 29.01 0.42 -1.38 16 2 C -0.15 -1.42 9.02 -36.02 -0.33 -1.75 16 3 C -0.08 -0.92 4.51 -27.88 -0.13 -1.05 16 4 C -0.10 -1.22 2.48 -91.77 -0.23 -1.45 16 5 C -0.08 -0.97 5.29 -27.88 -0.15 -1.12 16 6 C -0.15 -2.07 7.73 -36.02 -0.28 -2.35 16 7 C -0.18 -2.62 14.32 29.02 0.42 -2.21 16 8 C 0.50 8.87 6.16 -10.99 -0.07 8.80 16 9 O -0.53 -10.93 12.62 5.55 0.07 -10.86 16 10 N -0.63 -12.14 5.19 -9.48 -0.05 -12.19 16 11 C 0.02 0.46 6.53 -83.18 -0.54 -0.09 16 12 C -0.09 -2.14 8.81 -39.46 -0.35 -2.49 16 13 C -0.23 -5.21 9.82 -39.32 -0.39 -5.60 16 14 C -0.01 -0.20 6.31 -39.55 -0.25 -0.45 16 15 Cl -0.13 -2.66 28.94 -51.86 -1.50 -4.16 16 16 C -0.16 -3.97 8.50 -38.89 -0.33 -4.30 16 17 C 0.11 2.72 5.60 -106.65 -0.60 2.12 16 18 C -0.46 -10.90 8.64 -37.87 -0.33 -11.23 16 19 H 0.08 1.67 6.57 -52.49 -0.34 1.33 16 20 C 0.08 1.91 4.99 -17.32 -0.09 1.82 16 21 N -0.77 -18.65 11.22 55.55 0.62 -18.03 16 22 Si 0.90 17.01 29.62 -169.99 -5.04 11.98 16 23 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 24 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 26 H 0.09 0.72 8.06 -52.49 -0.42 0.29 16 27 H 0.10 0.86 7.84 -52.49 -0.41 0.44 16 28 H 0.11 0.93 6.92 -52.49 -0.36 0.57 16 29 H 0.07 0.87 7.79 -51.93 -0.40 0.47 16 30 H 0.09 1.12 6.37 -51.93 -0.33 0.79 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.92 7.78 -51.93 -0.40 0.52 16 33 H 0.08 0.76 6.65 -51.93 -0.35 0.41 16 34 H 0.11 1.36 6.98 -52.49 -0.37 1.00 16 35 H 0.09 1.28 8.06 -52.48 -0.42 0.86 16 36 H 0.10 1.46 7.83 -52.49 -0.41 1.04 16 37 H 0.40 6.84 7.07 -40.82 -0.29 6.56 16 38 H 0.14 3.21 5.28 -52.53 -0.28 2.93 16 39 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.13 3.30 6.21 -52.49 -0.33 2.97 16 41 H 0.29 6.34 8.30 -40.82 -0.34 6.00 16 LS Contribution 355.86 15.07 5.36 5.36 Total: -1.00 -27.04 355.86 -8.84 -35.88 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -5.10 Total: 14.73 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -3.21 Total: -22.71 kcal Atomic # 7 Polarization: -30.79 SS G_CDS: 0.57 Total: -30.21 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.07 Total: -10.86 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.04 Total: 11.98 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -1.50 Total: -4.16 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.04 -8.84 -35.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410963569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.660 kcal (2) G-P(sol) polarization free energy of solvation -27.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds