Wall clock time and date at job start Tue Mar 31 2020 12:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00040 * 2 1 4 4 C 1.52997 * 109.47156 * 125.00060 * 3 2 1 5 5 C 1.53002 * 109.47387 * 65.00118 * 4 3 2 6 6 C 1.50704 * 109.46949 * 61.89963 * 5 4 3 7 7 C 1.30996 * 119.99888 * 118.68371 * 6 5 4 8 8 C 1.50694 * 109.47636 * 185.00011 * 4 3 2 9 9 O 1.21287 * 119.99759 * 330.19744 * 8 4 3 10 10 N 1.34774 * 120.00564 * 150.18720 * 8 4 3 11 11 C 1.39148 * 120.00326 * 178.64656 * 10 8 4 12 12 C 1.38606 * 120.21194 * 21.26378 * 11 10 8 13 13 C 1.38190 * 120.17409 * 179.97438 * 12 11 10 14 14 C 1.39003 * 120.60315 * 0.02562 * 13 12 11 15 15 Cl 1.73596 * 119.78963 * 180.02562 * 14 13 12 16 16 C 1.37543 * 120.41938 * 359.73934 * 14 13 12 17 17 C 1.40742 * 119.80999 * 0.49453 * 16 14 13 18 18 C 1.41070 * 120.29254 * 179.78623 * 17 16 14 19 19 H 1.08000 * 120.00194 * 158.25369 * 18 17 16 20 20 C 1.39953 * 119.99964 * 338.52436 * 18 17 16 21 21 N 1.30860 * 120.00151 * 335.03483 * 20 18 17 22 22 Si 1.86796 * 120.00001 * 155.02991 * 20 18 17 23 23 H 1.48494 * 109.47075 * 60.00265 * 22 20 18 24 24 H 1.48499 * 109.47058 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47198 * 299.99984 * 22 20 18 26 26 H 1.08000 * 119.99665 * 179.97438 * 1 2 3 27 27 H 1.07994 * 119.99651 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00269 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47149 * 4.99966 * 3 2 1 30 30 H 1.09002 * 109.47338 * 244.99546 * 3 2 1 31 31 H 1.09003 * 109.47186 * 305.00245 * 4 3 2 32 32 H 1.08997 * 109.47634 * 181.90048 * 5 4 3 33 33 H 1.09001 * 109.47091 * 301.90222 * 5 4 3 34 34 H 1.08000 * 119.99920 * 298.68009 * 6 5 4 35 35 H 1.08003 * 120.00043 * 179.97438 * 7 6 5 36 36 H 1.08000 * 120.00037 * 0.02562 * 7 6 5 37 37 H 0.97001 * 119.99803 * 358.65194 * 10 8 4 38 38 H 1.08003 * 119.90884 * 359.97251 * 12 11 10 39 39 H 1.07998 * 119.69728 * 180.02562 * 13 12 11 40 40 H 1.07997 * 120.09314 * 180.25497 * 16 14 13 41 41 H 0.96999 * 119.99994 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 4.0999 0.2509 0.9921 6 6 4.8866 0.5345 -0.2616 7 6 6.1757 0.7560 -0.1899 8 6 3.6991 2.6839 1.2542 9 8 3.8773 3.3272 0.2416 10 7 4.0948 3.1773 2.4443 11 6 4.7333 4.4120 2.5081 12 6 4.5860 5.3274 1.4778 13 6 5.2200 6.5536 1.5422 14 6 6.0113 6.8845 2.6361 15 17 6.7975 8.4310 2.6954 16 6 6.1706 5.9966 3.6744 17 6 5.5369 4.7409 3.6247 18 6 5.6969 3.8207 4.6819 19 1 4.9701 3.0357 4.8293 20 6 6.7947 3.9286 5.5434 21 7 7.8922 4.5125 5.1347 22 14 6.6931 3.2393 7.2765 23 1 6.4284 1.7795 7.2138 24 1 7.9780 3.4801 7.9810 25 1 5.5920 3.9109 8.0127 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5399 0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6214 1.4026 -0.9313 31 1 2.4883 1.1468 2.1060 32 1 4.7722 0.2484 1.8501 33 1 3.6173 -0.7226 0.9058 34 1 4.3876 0.5550 -1.2192 35 1 6.7396 0.9587 -1.0885 36 1 6.6748 0.7350 0.7676 37 1 3.9346 2.6716 3.2564 38 1 3.9741 5.0816 0.6225 39 1 5.0996 7.2612 0.7353 40 1 6.7833 6.2608 4.5236 41 1 8.6529 4.5876 5.7319 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410963569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:00 Heat of formation + Delta-G solvation = -6.108590 kcal Electronic energy + Delta-G solvation = -24217.049031 eV Core-core repulsion = 20701.595920 eV Total energy + Delta-G solvation = -3515.453111 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.48372 -39.39002 -37.54230 -37.07333 -35.58203 -35.26221 -34.88361 -32.02014 -31.66037 -29.91498 -27.31541 -27.20347 -25.06834 -23.45902 -22.30384 -21.37003 -20.77064 -19.76833 -19.32153 -18.37194 -17.80199 -17.04542 -16.55522 -16.30826 -16.23110 -15.81542 -15.36695 -14.98581 -14.66337 -14.59189 -14.37117 -14.20451 -13.89856 -13.61354 -13.44071 -13.27305 -13.06393 -12.81155 -12.60978 -12.55087 -12.34733 -12.07316 -11.96242 -11.89632 -11.81394 -11.64550 -11.42281 -11.01598 -10.83678 -10.41656 -10.14529 -10.00793 -9.50658 -8.82485 -8.58997 -6.30028 0.68426 0.95364 1.41688 1.42850 1.46898 1.51489 1.54862 1.57324 1.88573 2.18406 2.45608 2.67318 3.58185 3.73006 3.82044 3.99654 4.21822 4.29850 4.37149 4.42822 4.52595 4.59106 4.60327 4.79431 4.90380 4.95523 5.02520 5.03349 5.06534 5.17574 5.22184 5.27739 5.30512 5.52606 5.72767 5.76083 5.83412 5.91110 5.91802 5.97860 5.99828 6.14411 6.47363 6.68946 6.85301 6.95365 7.45533 8.23442 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.004389 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.661547 B = 6377.934996 C = 7819.890704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.153 4.153 3 C -0.073 4.073 4 C -0.084 4.084 5 C -0.080 4.080 6 C -0.146 4.146 7 C -0.206 4.206 8 C 0.501 3.499 9 O -0.562 6.562 10 N -0.635 5.635 11 C 0.019 3.981 12 C -0.105 4.105 13 C -0.233 4.233 14 C -0.018 4.018 15 Cl -0.107 7.107 16 C -0.182 4.182 17 C 0.086 3.914 18 C -0.481 4.481 19 H 0.096 0.904 20 C 0.045 3.955 21 N -0.806 5.806 22 Si 0.977 3.023 23 H -0.250 1.250 24 H -0.275 1.275 25 H -0.260 1.260 26 H 0.114 0.886 27 H 0.091 0.909 28 H 0.128 0.872 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.413 0.587 38 H 0.140 0.860 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.891 -10.859 -2.691 14.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.171 4.171 3 C -0.111 4.111 4 C -0.105 4.105 5 C -0.117 4.117 6 C -0.164 4.164 7 C -0.243 4.243 8 C 0.291 3.709 9 O -0.442 6.442 10 N -0.277 5.277 11 C -0.076 4.076 12 C -0.125 4.125 13 C -0.254 4.254 14 C -0.045 4.045 15 Cl -0.079 7.079 16 C -0.203 4.203 17 C 0.082 3.918 18 C -0.509 4.509 19 H 0.114 0.886 20 C -0.174 4.174 21 N -0.430 5.430 22 Si 0.797 3.203 23 H -0.174 1.174 24 H -0.200 1.200 25 H -0.185 1.185 26 H 0.132 0.868 27 H 0.110 0.890 28 H 0.146 0.854 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.133 0.867 32 H 0.086 0.914 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.250 0.750 38 H 0.158 0.842 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.462 -10.268 -3.338 13.718 hybrid contribution 0.678 0.377 0.975 1.246 sum -7.784 -9.891 -2.364 12.806 Atomic orbital electron populations 1.24030 0.95911 1.02478 1.00529 1.22939 0.96024 0.97795 1.00369 1.20546 0.96780 0.96352 0.97394 1.21258 0.96886 0.90090 1.02311 1.20776 0.96292 0.98731 0.95906 1.22979 0.95238 0.98770 0.99432 1.23844 0.97293 1.01819 1.01372 1.21343 0.78668 0.88696 0.82235 1.90506 1.56868 1.60972 1.35876 1.43038 1.56073 1.18509 1.10074 1.17886 1.04960 0.87430 0.97303 1.21264 1.00206 0.91917 0.99108 1.20375 1.06555 0.99050 0.99384 1.20844 0.99385 0.86453 0.97829 1.98239 1.80512 1.30529 1.98613 1.20875 1.07106 0.93450 0.98903 1.17496 0.90180 0.92328 0.91811 1.19538 1.08022 1.12946 1.10350 0.88597 1.26760 0.93193 0.93723 1.03736 1.69919 1.02573 1.32540 1.37955 0.85313 0.78651 0.80015 0.76283 1.17404 1.20022 1.18452 0.86820 0.89036 0.85438 0.92304 0.90799 0.86730 0.91391 0.86580 0.86588 0.88643 0.89874 0.75022 0.84230 0.86847 0.86970 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.85 14.32 67.78 0.97 -1.88 16 2 C -0.15 -2.46 9.02 25.65 0.23 -2.23 16 3 C -0.07 -1.59 4.51 29.85 0.13 -1.46 16 4 C -0.08 -1.97 2.48 -11.54 -0.03 -2.00 16 5 C -0.08 -1.70 5.29 29.85 0.16 -1.55 16 6 C -0.15 -3.74 7.73 25.65 0.20 -3.55 16 7 C -0.21 -6.02 14.32 67.79 0.97 -5.05 16 8 C 0.50 17.29 6.16 87.66 0.54 17.83 16 9 O -0.56 -23.19 12.62 -3.05 -0.04 -23.23 16 10 N -0.64 -24.02 5.19 -302.31 -1.57 -25.59 16 11 C 0.02 0.91 6.53 38.86 0.25 1.16 16 12 C -0.10 -4.96 8.81 22.35 0.20 -4.76 16 13 C -0.23 -10.99 9.82 22.44 0.22 -10.77 16 14 C -0.02 -0.88 6.31 22.29 0.14 -0.74 16 15 Cl -0.11 -4.52 28.94 -2.72 -0.08 -4.60 16 16 C -0.18 -9.42 8.50 22.72 0.19 -9.22 16 17 C 0.09 4.32 5.60 -21.18 -0.12 4.20 16 18 C -0.48 -22.56 8.64 23.38 0.20 -22.36 16 19 H 0.10 3.99 6.57 -2.91 -0.02 3.98 16 20 C 0.04 2.02 4.99 85.25 0.43 2.45 16 21 N -0.81 -39.56 11.22 21.83 0.24 -39.32 16 22 Si 0.98 34.10 29.62 68.60 2.03 36.13 16 23 H -0.25 -8.14 7.11 99.48 0.71 -7.43 16 24 H -0.28 -9.48 7.11 99.48 0.71 -8.77 16 25 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 26 H 0.11 1.28 8.06 -2.91 -0.02 1.25 16 27 H 0.09 1.42 7.84 -2.91 -0.02 1.40 16 28 H 0.13 1.60 6.92 -2.91 -0.02 1.58 16 29 H 0.06 1.40 7.79 -2.39 -0.02 1.38 16 30 H 0.07 1.80 6.37 -2.39 -0.02 1.79 16 31 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.07 1.56 7.78 -2.39 -0.02 1.54 16 33 H 0.12 1.71 6.65 -2.39 -0.02 1.69 16 34 H 0.12 2.77 6.98 -2.91 -0.02 2.75 16 35 H 0.10 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.08 2.59 7.83 -2.91 -0.02 2.57 16 37 H 0.41 13.57 7.07 -92.71 -0.66 12.91 16 38 H 0.14 6.57 5.28 -3.68 -0.02 6.55 16 39 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 40 H 0.11 6.03 6.21 -2.91 -0.02 6.01 16 41 H 0.29 13.07 8.30 -92.71 -0.77 12.30 16 Total: -1.00 -59.34 355.86 5.67 -53.67 By element: Atomic # 1 Polarization: 42.47 SS G_CDS: 0.40 Total: 42.87 kcal Atomic # 6 Polarization: -44.61 SS G_CDS: 4.69 Total: -39.92 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: -1.33 Total: -64.91 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.04 Total: -23.23 kcal Atomic # 14 Polarization: 34.10 SS G_CDS: 2.03 Total: 36.13 kcal Atomic # 17 Polarization: -4.52 SS G_CDS: -0.08 Total: -4.60 kcal Total: -59.34 5.67 -53.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410963569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.557 kcal (2) G-P(sol) polarization free energy of solvation -59.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds