Wall clock time and date at job start Tue Mar 31 2020 12:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34966 * 125.60932 * 2 1 4 4 C 1.40589 * 107.11669 * 179.74404 * 3 2 1 5 5 C 1.36682 * 106.70012 * 0.37191 * 4 3 2 6 6 C 1.46279 * 125.99434 * 179.88826 * 5 4 3 7 7 C 1.35120 * 120.00455 * 213.53209 * 6 5 4 8 8 C 1.46499 * 119.99760 * 9.31481 * 7 6 5 9 9 N 1.32320 * 126.15329 * 6.22914 * 8 7 6 10 10 C 1.33327 * 109.68831 * 180.02562 * 9 8 7 11 11 S 1.76200 * 125.35888 * 179.97438 * 10 9 8 12 12 C 1.81401 * 103.00229 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.47315 * 304.99960 * 12 11 10 14 14 C 1.53003 * 109.46877 * 65.00015 * 12 11 10 15 15 C 1.52996 * 109.47457 * 184.99916 * 12 11 10 16 16 C 1.50703 * 109.47195 * 64.99986 * 15 12 11 17 17 H 1.08000 * 119.99603 * 0.02562 * 16 15 12 18 18 C 1.37873 * 120.00361 * 180.02562 * 16 15 12 19 19 N 1.31519 * 119.99933 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00368 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46913 * 59.99747 * 20 18 16 22 22 H 1.48496 * 109.47213 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47001 * 300.00045 * 20 18 16 24 24 N 1.31370 * 109.28182 * 359.97438 * 10 9 8 25 25 N 1.36172 * 126.15343 * 185.92008 * 8 7 6 26 26 H 0.97001 * 126.87273 * 359.95634 * 25 8 7 27 27 O 1.34249 * 125.60444 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47088 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47104 * 300.00590 * 1 2 3 30 30 H 1.09007 * 109.46998 * 60.00250 * 1 2 3 31 31 H 1.07995 * 126.44064 * 359.97083 * 3 2 1 32 32 H 1.08002 * 126.64694 * 180.24503 * 4 3 2 33 33 H 1.08006 * 119.99971 * 33.52534 * 6 5 4 34 34 H 1.08001 * 120.00139 * 189.04481 * 7 6 5 35 35 H 1.09001 * 109.47282 * 299.99873 * 14 12 11 36 36 H 1.08998 * 109.47405 * 60.00368 * 14 12 11 37 37 H 1.09006 * 109.46894 * 180.02562 * 14 12 11 38 38 H 1.08997 * 109.47186 * 184.99850 * 15 12 11 39 39 H 1.09004 * 109.46998 * 305.00046 * 15 12 11 40 40 H 0.96995 * 120.00438 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2929 1.0973 0.0000 4 6 3.6262 0.6514 0.0060 5 6 3.5834 -0.7148 0.0009 6 6 4.7395 -1.6110 0.0020 7 6 4.6783 -2.7936 -0.6489 8 6 3.5399 -3.0912 -1.5217 9 7 2.5691 -2.2545 -1.8510 10 6 1.7041 -2.8665 -2.6603 11 16 0.2561 -2.1337 -3.3465 12 6 -0.4543 -3.4800 -4.3331 13 1 0.2924 -3.8479 -5.0369 14 6 -0.8863 -4.6182 -3.4065 15 6 -1.6696 -2.9610 -5.1041 16 6 -1.2251 -1.9253 -6.1046 17 1 -0.1801 -1.6638 -6.1829 18 6 -2.1523 -1.3116 -6.9198 19 7 -3.4247 -1.6304 -6.8248 20 14 -1.6012 -0.0284 -8.1603 21 1 -0.6373 -0.6400 -9.1102 22 1 -2.7809 0.4764 -8.9077 23 1 -0.9471 1.0991 -7.4488 24 7 2.1013 -4.1017 -2.8656 25 7 3.2936 -4.2767 -2.1446 26 1 3.8329 -5.0817 -2.0982 27 8 2.2886 -1.0915 0.0005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.9601 2.1247 -0.0004 32 1 4.5124 1.2687 0.0113 33 1 5.6421 -1.3276 0.5230 34 1 5.4707 -3.5175 -0.5292 35 1 -0.0205 -4.9881 -2.8572 36 1 -1.6330 -4.2504 -2.7028 37 1 -1.3128 -5.4274 -3.9994 38 1 -2.1490 -3.7887 -5.6268 39 1 -2.3777 -2.5125 -4.4072 40 1 -4.0771 -1.1984 -7.3980 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412985745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:01 Heat of formation + Delta-G solvation = 100.046896 kcal Electronic energy + Delta-G solvation = -24101.365118 eV Core-core repulsion = 20624.851712 eV Total energy + Delta-G solvation = -3476.513407 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.21708 -42.66602 -36.48139 -35.84722 -34.09521 -33.87874 -33.50880 -32.49572 -31.01659 -29.37437 -27.31243 -25.28095 -24.36406 -24.01787 -22.53118 -22.22427 -21.55918 -20.31416 -19.23979 -18.50568 -17.45927 -17.24145 -16.82159 -16.63659 -16.52739 -16.23061 -15.70453 -15.22939 -14.80234 -14.30022 -14.18201 -13.85615 -13.74183 -13.68821 -13.51786 -13.33414 -13.13135 -13.00193 -12.86907 -12.67774 -12.56393 -12.47677 -12.38075 -11.98427 -11.55053 -11.45540 -11.33285 -11.17640 -10.87212 -10.52835 -10.44602 -10.19979 -8.71514 -8.50715 -8.19248 -6.27839 -0.36146 0.33229 0.77497 1.31753 1.40819 1.43348 1.44625 1.51051 1.86341 1.96717 2.22256 2.39483 2.42371 3.15673 3.38450 3.69628 3.90384 4.04332 4.14304 4.18139 4.29526 4.49529 4.50024 4.63807 4.74888 4.85414 4.87035 4.92462 4.96834 4.99668 5.04141 5.11094 5.16914 5.24165 5.34439 5.37877 5.49730 5.52797 5.77528 5.84782 6.17890 6.20457 6.51259 6.82888 6.92400 7.39986 8.92141 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.004062 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.578087 B = 6891.710133 C = 7747.968927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.004 4.004 3 C -0.241 4.241 4 C -0.184 4.184 5 C -0.023 4.023 6 C 0.003 3.997 7 C -0.115 4.115 8 C 0.307 3.693 9 N -0.511 5.511 10 C 0.199 3.801 11 S 0.007 5.993 12 C -0.055 4.055 13 H 0.071 0.929 14 C -0.134 4.134 15 C 0.049 3.951 16 C -0.534 4.534 17 H 0.058 0.942 18 C 0.011 3.989 19 N -0.927 5.927 20 Si 0.953 3.047 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.270 1.270 24 N -0.339 5.339 25 N -0.471 5.471 26 H 0.455 0.545 27 O -0.146 6.146 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.156 0.844 32 H 0.170 0.830 33 H 0.208 0.792 34 H 0.200 0.800 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.020 0.980 39 H 0.008 0.992 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.446 -0.984 17.941 25.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.057 4.057 3 C -0.260 4.260 4 C -0.203 4.203 5 C -0.074 4.074 6 C -0.019 4.019 7 C -0.135 4.135 8 C 0.032 3.968 9 N -0.242 5.242 10 C -0.191 4.191 11 S 0.235 5.765 12 C -0.184 4.184 13 H 0.090 0.910 14 C -0.193 4.193 15 C 0.010 3.990 16 C -0.572 4.572 17 H 0.076 0.924 18 C -0.187 4.187 19 N -0.567 5.567 20 Si 0.778 3.222 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.195 1.195 24 N -0.174 5.174 25 N -0.193 5.193 26 H 0.304 0.696 27 O -0.040 6.040 28 H 0.081 0.919 29 H 0.124 0.876 30 H 0.100 0.900 31 H 0.173 0.827 32 H 0.188 0.812 33 H 0.225 0.775 34 H 0.217 0.783 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.039 0.961 39 H 0.026 0.974 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.292 -0.378 17.608 24.682 hybrid contribution 0.625 -1.010 -1.167 1.666 sum 17.918 -1.388 16.441 24.357 Atomic orbital electron populations 1.20367 0.85016 1.03642 1.04165 1.22937 0.94772 0.84752 1.03200 1.21649 0.93370 0.99604 1.11419 1.22152 0.98459 0.93466 1.06266 1.21047 0.83323 0.94082 1.08906 1.22075 0.94225 0.90029 0.95579 1.21651 0.94334 1.00092 0.97385 1.23587 0.95669 0.82592 0.94992 1.71087 1.04013 1.31886 1.17179 1.26297 1.02060 0.91787 0.98949 1.86008 1.16479 1.19158 1.54866 1.23422 1.01116 0.95714 0.98194 0.91021 1.21998 1.01535 0.96987 0.98760 1.18820 0.90825 0.95663 0.93644 1.21500 0.94122 1.22204 1.19422 0.92372 1.25763 0.94857 0.98936 0.99153 1.70050 1.01982 1.44096 1.40612 0.85672 0.77856 0.79536 0.79102 1.19490 1.20507 1.19511 1.78275 1.00042 1.17708 1.21407 1.48054 1.19768 1.13941 1.37506 0.69552 1.84287 1.16444 1.34317 1.68996 0.91927 0.87620 0.89950 0.82674 0.81238 0.77540 0.78346 0.91942 0.92087 0.91175 0.96143 0.97386 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.96 10.41 71.24 0.74 -1.22 16 2 C 0.00 -0.12 7.31 24.93 0.18 0.06 16 3 C -0.24 -6.29 10.77 22.09 0.24 -6.05 16 4 C -0.18 -4.24 10.86 22.48 0.24 -3.99 16 5 C -0.02 -0.56 5.85 24.00 0.14 -0.42 16 6 C 0.00 0.05 10.14 23.64 0.24 0.29 16 7 C -0.11 -1.65 10.25 23.71 0.24 -1.41 16 8 C 0.31 8.03 7.64 135.97 1.04 9.07 16 9 N -0.51 -17.93 6.87 -190.58 -1.31 -19.24 16 10 C 0.20 7.77 8.01 180.54 1.45 9.22 16 11 S 0.01 0.31 20.90 -56.49 -1.18 -0.87 16 12 C -0.05 -2.43 2.47 30.59 0.08 -2.35 16 13 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 14 C -0.13 -5.02 9.06 71.98 0.65 -4.37 16 15 C 0.05 2.58 4.45 29.85 0.13 2.72 16 16 C -0.53 -30.49 8.53 25.60 0.22 -30.27 16 17 H 0.06 3.31 7.60 -2.91 -0.02 3.29 16 18 C 0.01 0.66 5.46 84.65 0.46 1.12 16 19 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 20 Si 0.95 45.13 29.54 68.60 2.03 47.15 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 24 N -0.34 -12.10 10.64 -58.73 -0.62 -12.72 16 25 N -0.47 -11.95 7.53 -52.17 -0.39 -12.34 16 26 H 0.46 7.20 8.96 -213.11 -1.91 5.29 16 27 O -0.15 -4.53 7.28 -7.42 -0.05 -4.59 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 32 H 0.17 2.77 8.06 -2.91 -0.02 2.74 16 33 H 0.21 0.75 8.06 -2.91 -0.02 0.72 16 34 H 0.20 0.71 8.06 -2.91 -0.02 0.69 16 35 H 0.06 2.25 6.21 -2.39 -0.01 2.24 16 36 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 38 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 40 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -77.23 357.04 3.96 -73.28 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -0.85 Total: 12.45 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 6.06 Total: -27.60 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -2.04 Total: -99.82 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.05 Total: -4.59 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -1.18 Total: -0.87 kcal Total: -77.23 3.96 -73.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412985745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.322 kcal (2) G-P(sol) polarization free energy of solvation -77.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds