Wall clock time and date at job start Tue Mar 31 2020 12:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34964 * 125.60894 * 2 1 4 4 C 1.40577 * 107.12350 * 179.74853 * 3 2 1 5 5 C 1.36687 * 106.69698 * 0.40591 * 4 3 2 6 6 C 1.46286 * 125.99113 * 179.85721 * 5 4 3 7 7 C 1.35121 * 119.99439 * 179.71920 * 6 5 4 8 8 C 1.46496 * 119.99555 * 179.97438 * 7 6 5 9 9 N 1.32317 * 126.15601 * 0.02754 * 8 7 6 10 10 C 1.33336 * 109.69088 * 179.97438 * 9 8 7 11 11 S 1.76205 * 125.36050 * 180.02562 * 10 9 8 12 12 C 1.81392 * 102.99967 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.47261 * 55.00299 * 12 11 10 14 14 C 1.52995 * 109.47414 * 295.00290 * 12 11 10 15 15 C 1.53004 * 109.47372 * 174.99693 * 12 11 10 16 16 C 1.50698 * 109.47100 * 295.00467 * 15 12 11 17 17 H 1.08002 * 120.00390 * 359.97438 * 16 15 12 18 18 C 1.37877 * 119.99542 * 179.97438 * 16 15 12 19 19 N 1.31520 * 119.99785 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00278 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47107 * 90.00389 * 20 18 16 22 22 H 1.48503 * 109.47107 * 209.99737 * 20 18 16 23 23 H 1.48497 * 109.47244 * 330.00100 * 20 18 16 24 24 N 1.31364 * 109.28016 * 359.97438 * 10 9 8 25 25 N 1.36172 * 126.15222 * 179.71172 * 8 7 6 26 26 H 0.97000 * 126.87514 * 0.02562 * 25 8 7 27 27 O 1.34242 * 125.61096 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.46952 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47043 * 299.97284 * 1 2 3 30 30 H 1.09000 * 109.47061 * 59.97866 * 1 2 3 31 31 H 1.08006 * 126.43613 * 0.02562 * 3 2 1 32 32 H 1.08001 * 126.65345 * 180.26651 * 4 3 2 33 33 H 1.07995 * 120.00172 * 359.43780 * 6 5 4 34 34 H 1.07999 * 120.00358 * 359.97438 * 7 6 5 35 35 H 1.09006 * 109.46908 * 299.99665 * 14 12 11 36 36 H 1.08999 * 109.47489 * 60.00077 * 14 12 11 37 37 H 1.09003 * 109.47504 * 179.97438 * 14 12 11 38 38 H 1.09006 * 109.46214 * 55.00138 * 15 12 11 39 39 H 1.09000 * 109.47438 * 175.00064 * 15 12 11 40 40 H 0.97003 * 120.00011 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2929 1.0973 0.0000 4 6 3.6261 0.6516 0.0059 5 6 3.5835 -0.7146 0.0000 6 6 4.7397 -1.6108 0.0000 7 6 4.5567 -2.9496 -0.0005 8 6 5.7145 -3.8470 -0.0011 9 7 6.9860 -3.4809 -0.0006 10 6 7.7652 -4.5629 -0.0007 11 16 9.5272 -4.5508 0.0004 12 6 9.9474 -6.3154 -0.0012 13 1 9.4587 -6.8045 -0.8439 14 6 9.4716 -6.9542 1.3050 15 6 11.4635 -6.4785 -0.1262 16 6 11.9158 -5.9597 -1.4668 17 1 11.1940 -5.5545 -2.1606 18 6 13.2511 -6.0023 -1.8077 19 7 13.6457 -5.5500 -2.9779 20 14 14.4996 -6.7025 -0.6076 21 1 14.6485 -8.1611 -0.8431 22 1 15.8094 -6.0324 -0.8088 23 1 14.0334 -6.4706 0.7831 24 7 7.0124 -5.6395 -0.0008 25 7 5.6759 -5.2082 0.0039 26 1 4.8837 -5.7680 0.0081 27 8 2.2887 -1.0914 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5134 0.8902 30 1 -0.3633 0.5142 -0.8898 31 1 1.9599 2.1247 0.0004 32 1 4.5123 1.2689 0.0115 33 1 5.7394 -1.2024 -0.0041 34 1 3.5569 -3.3580 -0.0006 35 1 9.9603 -6.4652 2.1478 36 1 8.3915 -6.8381 1.3940 37 1 9.7237 -8.0147 1.3039 38 1 11.9560 -5.9152 0.6665 39 1 11.7240 -7.5333 -0.0381 40 1 14.5852 -5.5796 -3.2176 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412985747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:03 Heat of formation + Delta-G solvation = 101.300196 kcal Electronic energy + Delta-G solvation = -22273.292560 eV Core-core repulsion = 18796.833501 eV Total energy + Delta-G solvation = -3476.459059 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.87160 -41.67423 -35.13012 -34.68594 -33.58848 -32.46295 -32.22509 -32.01758 -30.22209 -28.01369 -26.82394 -23.44638 -23.09424 -22.89705 -22.13898 -20.98646 -20.39437 -19.61372 -18.14379 -16.82693 -16.72801 -16.57729 -16.01538 -15.50740 -15.33964 -14.89348 -14.72163 -14.25832 -13.66644 -13.52340 -13.27473 -13.05622 -12.99522 -12.63685 -12.46715 -12.33535 -12.25028 -11.89014 -11.80811 -11.44257 -11.33309 -11.01017 -10.58846 -10.43516 -10.24883 -10.14163 -9.92559 -9.69127 -9.55149 -9.36550 -9.22738 -8.53717 -8.10196 -7.04211 -6.02833 -4.01965 0.24102 1.55388 1.74511 2.06155 2.44388 2.57001 2.58605 3.13874 3.16952 3.31163 3.39347 3.41697 4.07994 4.31294 4.44998 4.45484 4.61266 4.77201 4.93730 4.96899 5.07091 5.22848 5.30549 5.36866 5.50162 5.57686 5.69896 5.72661 5.81912 5.91005 5.97043 6.03597 6.16585 6.32111 6.38254 6.42484 6.59933 6.77031 7.00730 7.04283 7.18414 7.70372 8.00130 8.51428 9.04057 9.57309 11.09807 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.028765 B = 0.002126 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.164858 B =13166.244874 C =13760.381361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.003 4.003 3 C -0.214 4.214 4 C -0.167 4.167 5 C -0.001 4.001 6 C -0.006 4.006 7 C -0.098 4.098 8 C 0.313 3.687 9 N -0.508 5.508 10 C 0.213 3.787 11 S 0.050 5.950 12 C -0.062 4.062 13 H 0.091 0.909 14 C -0.149 4.149 15 C 0.003 3.997 16 C -0.523 4.523 17 H 0.082 0.918 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.874 3.126 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.264 1.264 24 N -0.314 5.314 25 N -0.483 5.483 26 H 0.438 0.562 27 O -0.170 6.170 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.151 0.849 32 H 0.157 0.843 33 H 0.166 0.834 34 H 0.140 0.860 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.027 0.973 39 H 0.034 0.966 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.601 9.443 8.532 29.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.054 4.054 3 C -0.233 4.233 4 C -0.186 4.186 5 C -0.050 4.050 6 C -0.029 4.029 7 C -0.119 4.119 8 C 0.037 3.963 9 N -0.238 5.238 10 C -0.176 4.176 11 S 0.278 5.722 12 C -0.192 4.192 13 H 0.109 0.891 14 C -0.208 4.208 15 C -0.036 4.036 16 C -0.562 4.562 17 H 0.100 0.900 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.701 3.299 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.189 1.189 24 N -0.148 5.148 25 N -0.202 5.202 26 H 0.284 0.716 27 O -0.067 6.067 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.169 0.831 32 H 0.174 0.826 33 H 0.183 0.817 34 H 0.158 0.842 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.052 0.948 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.324 9.640 8.411 28.372 hybrid contribution -0.778 -1.584 0.398 1.809 sum -26.102 8.056 8.809 28.702 Atomic orbital electron populations 1.20361 0.84918 1.04213 1.03778 1.22660 0.94102 0.84053 1.04574 1.21525 0.92690 0.99587 1.09515 1.22046 0.98541 0.93289 1.04772 1.20610 0.81699 0.93448 1.09289 1.21472 0.94951 0.91378 0.95125 1.20879 0.93898 0.91942 1.05172 1.22519 0.93362 0.83161 0.97263 1.70924 0.98349 1.29428 1.25097 1.26762 1.03344 0.87854 0.99612 1.86285 0.83328 1.12021 1.90568 1.23504 1.02927 0.92222 1.00525 0.89086 1.22149 1.01247 1.00766 0.96617 1.19526 0.87404 0.97681 0.99028 1.21148 0.94161 1.41021 0.99847 0.89971 1.24982 0.98310 0.94824 0.94973 1.69910 1.16254 1.46561 1.20749 0.86869 0.81163 0.79421 0.82454 1.20291 1.21235 1.18876 1.78441 0.85789 1.20975 1.29636 1.48153 1.08046 1.05675 1.58375 0.71646 1.84041 1.16288 1.34951 1.71449 0.90479 0.89454 0.89428 0.83081 0.82562 0.81699 0.84208 0.92253 0.92284 0.92068 0.95458 0.94825 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.41 36.01 0.37 0.07 16 2 C 0.00 -0.02 7.31 -35.47 -0.26 -0.28 16 3 C -0.21 -1.65 10.77 -39.86 -0.43 -2.08 16 4 C -0.17 -1.46 10.86 -39.26 -0.43 -1.89 16 5 C 0.00 -0.01 6.99 -36.91 -0.26 -0.27 16 6 C -0.01 -0.06 9.72 -37.46 -0.36 -0.43 16 7 C -0.10 -1.00 9.85 -37.37 -0.37 -1.37 16 8 C 0.31 4.33 7.96 -154.79 -1.23 3.10 16 9 N -0.51 -8.88 10.77 -11.59 -0.12 -9.00 16 10 C 0.21 4.06 8.01 -91.18 -0.73 3.33 16 11 S 0.05 1.03 20.90 -107.50 -2.25 -1.21 16 12 C -0.06 -1.28 2.47 -26.73 -0.07 -1.34 16 13 H 0.09 1.96 8.14 -51.92 -0.42 1.53 16 14 C -0.15 -2.56 9.06 37.15 0.34 -2.22 16 15 C 0.00 0.06 3.51 -27.88 -0.10 -0.04 16 16 C -0.52 -14.67 9.09 -34.44 -0.31 -14.98 16 17 H 0.08 2.51 7.85 -52.49 -0.41 2.09 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 20 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 24 N -0.31 -5.53 10.64 30.09 0.32 -5.21 16 25 N -0.48 -6.47 7.53 32.16 0.24 -6.23 16 26 H 0.44 3.99 8.96 -182.34 -1.63 2.35 16 27 O -0.17 -1.65 10.30 4.36 0.04 -1.60 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 32 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.17 1.70 7.73 -52.49 -0.41 1.29 16 34 H 0.14 1.08 7.79 -52.49 -0.41 0.67 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.00 6.21 -51.93 -0.32 0.67 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 39 H 0.03 0.77 7.57 -51.93 -0.39 0.38 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 360.39 15.07 5.43 5.43 Total: -1.00 -34.18 360.39 -10.66 -44.84 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.50 Total: -0.56 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -3.93 Total: -16.45 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 1.21 Total: -47.17 kcal Atomic # 8 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.25 Total: -1.21 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.18 -10.66 -44.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412985747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.142 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds