Wall clock time and date at job start Tue Mar 31 2020 12:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.36628 * 125.45604 * 248.17293 * 3 2 1 5 5 C 1.37605 * 113.26905 * 180.02562 * 4 3 2 6 6 C 1.33715 * 115.09952 * 0.02562 * 5 4 3 7 7 C 1.50698 * 124.51770 * 179.97438 * 6 5 4 8 8 N 1.46493 * 109.47082 * 89.99615 * 7 6 5 9 9 C 1.34784 * 119.99864 * 180.02562 * 8 7 6 10 10 O 1.21588 * 119.99858 * 359.72927 * 9 8 7 11 11 N 1.34777 * 119.99964 * 179.73002 * 9 8 7 12 12 C 1.46496 * 119.99614 * 180.02562 * 11 9 8 13 13 H 1.08995 * 110.01797 * 326.38330 * 12 11 9 14 14 C 1.54268 * 110.03584 * 87.83200 * 12 11 9 15 15 C 1.54891 * 104.19892 * 95.67177 * 14 12 11 16 16 C 1.54891 * 102.74670 * 37.94058 * 15 14 12 17 17 H 1.09006 * 110.48514 * 80.73981 * 16 15 14 18 18 C 1.50697 * 110.48631 * 203.37972 * 16 15 14 19 19 H 1.07999 * 119.99926 * 114.77510 * 18 16 15 20 20 C 1.37880 * 120.00075 * 294.78014 * 18 16 15 21 21 N 1.31522 * 119.99776 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99960 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47115 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46936 * 120.00008 * 22 20 18 25 25 H 1.48504 * 109.46879 * 239.99424 * 22 20 18 26 26 C 1.53874 * 110.02984 * 204.99576 * 12 11 9 27 27 S 1.70617 * 110.97282 * 0.22925 * 6 5 4 28 28 H 1.07999 * 123.36529 * 0.04968 * 4 3 2 29 29 H 1.08003 * 122.45364 * 180.02562 * 5 4 3 30 30 H 1.09007 * 109.46606 * 329.99865 * 7 6 5 31 31 H 1.09006 * 109.47204 * 210.00322 * 7 6 5 32 32 H 0.97000 * 120.00740 * 359.72841 * 8 7 6 33 33 H 0.96996 * 119.99887 * 359.97438 * 11 9 8 34 34 H 1.08997 * 110.48615 * 214.35414 * 14 12 11 35 35 H 1.09007 * 110.48250 * 336.99149 * 14 12 11 36 36 H 1.09003 * 110.75083 * 279.63346 * 15 14 12 37 37 H 1.08994 * 110.91359 * 156.32912 * 15 14 12 38 38 H 0.96996 * 119.99598 * 180.02562 * 21 20 18 39 39 H 1.09005 * 110.03246 * 0.02562 * 26 12 11 40 40 H 1.08997 * 110.03413 * 121.42927 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3604 0.4148 1.0331 5 6 4.7055 0.3079 0.7633 6 6 5.0045 -0.1756 -0.4470 7 6 6.4057 -0.3801 -0.9626 8 7 6.8613 -1.7288 -0.6168 9 6 8.0939 -2.1370 -0.9783 10 8 8.8258 -1.3877 -1.5957 11 7 8.5152 -3.3759 -0.6555 12 6 9.8551 -3.8194 -1.0479 13 1 10.1302 -3.3744 -2.0041 14 6 10.8807 -3.4244 0.0346 15 6 11.0131 -4.6929 0.9135 16 6 10.9408 -5.8384 -0.1265 17 1 11.9087 -5.9781 -0.6081 18 6 10.4865 -7.1174 0.5282 19 1 9.5404 -7.5589 0.2520 20 6 11.2787 -7.7238 1.4799 21 7 12.4311 -7.1863 1.8159 22 14 10.7159 -9.3096 2.2910 23 1 9.3941 -9.7046 1.7415 24 1 11.7060 -10.3827 2.0200 25 1 10.6000 -9.1018 3.7569 26 6 9.8933 -5.3542 -1.1504 27 16 3.5883 -0.5238 -1.3325 28 1 2.9701 0.7883 1.9683 29 1 5.4643 0.5937 1.4768 30 1 7.0705 0.3554 -0.5094 31 1 6.4155 -0.2598 -2.0460 32 1 6.2777 -2.3265 -0.1240 33 1 7.9314 -3.9736 -0.1627 34 1 11.8389 -3.1741 -0.4208 35 1 10.5082 -2.5877 0.6258 36 1 10.1864 -4.7606 1.6208 37 1 11.9692 -4.7058 1.4366 38 1 12.9885 -7.6131 2.4852 39 1 8.9147 -5.7691 -0.9085 40 1 10.1878 -5.6541 -2.1560 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420834847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:09 Heat of formation + Delta-G solvation = 20.215731 kcal Electronic energy + Delta-G solvation = -22793.365107 eV Core-core repulsion = 19313.389961 eV Total energy + Delta-G solvation = -3479.975146 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.01258 -38.83875 -37.36393 -36.85452 -34.81967 -33.57881 -32.05013 -30.84237 -28.18104 -27.63646 -26.52994 -24.10156 -23.62437 -21.43918 -21.11678 -19.50698 -19.45758 -18.93312 -17.85205 -16.95119 -16.66044 -16.04796 -15.53795 -15.03731 -14.79405 -14.68255 -14.47409 -14.15801 -14.00751 -13.82513 -13.59390 -13.21262 -12.88793 -12.78857 -12.57282 -12.38266 -12.24069 -11.70564 -11.41853 -11.04883 -11.01268 -10.86167 -10.54387 -10.45513 -10.03410 -9.92439 -9.59027 -9.31135 -9.27861 -9.22660 -9.12383 -8.82210 -8.50630 -8.36792 -6.03540 -4.06540 -0.15937 0.62335 1.28753 1.78072 2.42553 2.81378 2.93142 3.26714 3.35507 3.37160 3.38108 3.41812 4.09654 4.40180 4.45200 4.65296 4.82414 5.10440 5.28484 5.32631 5.39828 5.55216 5.56743 5.67444 5.76993 5.83026 6.29785 6.32986 6.34703 6.56658 6.64752 6.74072 6.91149 6.93723 6.94950 7.05637 7.26339 7.36977 7.69009 7.84620 8.00259 8.18407 8.41010 8.76627 8.96430 9.57619 11.05915 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.017203 B = 0.002351 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.259293 B =11909.442660 C =12896.533520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C 0.281 3.719 3 C -0.170 4.170 4 C -0.059 4.059 5 C -0.125 4.125 6 C -0.216 4.216 7 C 0.211 3.789 8 N -0.751 5.751 9 C 0.703 3.297 10 O -0.595 6.595 11 N -0.727 5.727 12 C 0.158 3.842 13 H 0.076 0.924 14 C -0.137 4.137 15 C -0.099 4.099 16 C 0.047 3.953 17 H 0.033 0.967 18 C -0.513 4.513 19 H 0.055 0.945 20 C 0.062 3.938 21 N -0.888 5.888 22 Si 0.888 3.112 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.123 4.123 27 S 0.271 5.729 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.398 0.602 33 H 0.396 0.604 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.066 0.934 38 H 0.259 0.741 39 H 0.061 0.939 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.504 15.261 -3.319 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.082 5.082 2 C -0.035 4.035 3 C -0.291 4.291 4 C -0.095 4.095 5 C -0.157 4.157 6 C -0.337 4.337 7 C 0.085 3.915 8 N -0.409 5.409 9 C 0.403 3.597 10 O -0.474 6.474 11 N -0.381 5.381 12 C 0.054 3.946 13 H 0.094 0.906 14 C -0.175 4.175 15 C -0.137 4.137 16 C 0.029 3.971 17 H 0.051 0.949 18 C -0.551 4.551 19 H 0.073 0.927 20 C -0.140 4.140 21 N -0.526 5.526 22 Si 0.716 3.284 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.161 4.161 27 S 0.540 5.460 28 H 0.173 0.827 29 H 0.171 0.829 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.231 0.769 33 H 0.230 0.770 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.658 15.328 -5.297 23.248 hybrid contribution -0.059 -0.833 2.605 2.736 sum -16.717 14.494 -2.692 22.289 Atomic orbital electron populations 1.81327 1.11192 1.08905 1.06783 1.24305 0.90949 0.93791 0.94421 1.20496 0.89371 1.17005 1.02231 1.20757 0.92140 0.97953 0.98649 1.20031 0.96370 1.02393 0.96858 1.24366 1.01036 1.08250 1.00080 1.19455 0.87016 0.84791 1.00267 1.45159 1.16423 1.15958 1.63359 1.15970 0.81162 0.82735 0.79830 1.90909 1.55395 1.54672 1.46375 1.45494 1.18362 1.13593 1.60662 1.21663 0.79702 0.95643 0.97632 0.90567 1.22858 0.97829 0.99166 0.97677 1.22448 1.01114 0.92444 0.97732 1.19476 0.93544 0.93239 0.90887 0.94891 1.21199 1.04761 1.07557 1.21602 0.92693 1.24990 0.94915 0.97234 0.96850 1.69970 1.11190 1.39393 1.32086 0.86607 0.78717 0.83829 0.79237 1.19855 1.21094 1.21137 1.22619 1.01697 0.91295 1.00481 1.83430 0.92118 1.57659 1.12757 0.82731 0.82877 0.89256 0.90275 0.76853 0.76991 0.92054 0.93163 0.93595 0.91544 0.93125 0.92043 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.42 18.54 41.84 0.78 -3.64 16 2 C 0.28 2.41 15.83 -22.47 -0.36 2.05 16 3 C -0.17 -1.09 6.32 -38.24 -0.24 -1.33 16 4 C -0.06 -0.30 10.24 -40.39 -0.41 -0.71 16 5 C -0.12 -0.64 10.00 -41.40 -0.41 -1.06 16 6 C -0.22 -1.30 5.64 -35.90 -0.20 -1.50 16 7 C 0.21 1.69 6.10 -5.20 -0.03 1.66 16 8 N -0.75 -7.34 5.55 -66.41 -0.37 -7.71 16 9 C 0.70 10.06 8.56 -86.91 -0.74 9.32 16 10 O -0.59 -10.79 16.00 5.29 0.08 -10.70 16 11 N -0.73 -10.55 5.03 -57.58 -0.29 -10.84 16 12 C 0.16 2.73 3.25 -66.81 -0.22 2.52 16 13 H 0.08 1.37 7.56 -51.93 -0.39 0.98 16 14 C -0.14 -2.56 6.54 -25.07 -0.16 -2.72 16 15 C -0.10 -2.19 5.75 -24.74 -0.14 -2.33 16 16 C 0.05 1.10 2.72 -90.11 -0.25 0.86 16 17 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 18 C -0.51 -13.31 8.46 -34.44 -0.29 -13.60 16 19 H 0.05 1.40 7.54 -52.49 -0.40 1.00 16 20 C 0.06 1.65 5.35 -17.82 -0.10 1.56 16 21 N -0.89 -24.81 12.29 55.43 0.68 -24.13 16 22 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 C -0.12 -2.32 6.13 -25.61 -0.16 -2.48 16 27 S 0.27 1.55 23.01 -107.50 -2.47 -0.93 16 28 H 0.16 0.50 8.06 -52.49 -0.42 0.08 16 29 H 0.15 0.63 8.06 -52.48 -0.42 0.20 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.40 3.04 8.48 -40.82 -0.35 2.70 16 33 H 0.40 5.01 8.34 -40.82 -0.34 4.67 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.05 0.92 8.04 -51.92 -0.42 0.50 16 36 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 37 H 0.07 1.62 7.55 -51.93 -0.39 1.23 16 38 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.06 1.12 7.13 -51.93 -0.37 0.75 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 359.99 15.07 5.43 5.43 Total: -1.00 -31.32 359.99 -10.07 -41.39 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.17 Total: 3.34 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -3.72 Total: -7.76 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.80 Total: -46.33 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.47 Total: -0.93 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.32 -10.07 -41.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420834847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.608 kcal (2) G-P(sol) polarization free energy of solvation -31.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds