Wall clock time and date at job start Tue Mar 31 2020 12:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.36628 * 125.45604 * 248.17293 * 3 2 1 5 5 C 1.37605 * 113.26905 * 180.02562 * 4 3 2 6 6 C 1.33715 * 115.09952 * 0.02562 * 5 4 3 7 7 C 1.50698 * 124.51770 * 179.97438 * 6 5 4 8 8 N 1.46493 * 109.47082 * 89.99615 * 7 6 5 9 9 C 1.34784 * 119.99864 * 180.02562 * 8 7 6 10 10 O 1.21588 * 119.99858 * 359.72927 * 9 8 7 11 11 N 1.34777 * 119.99964 * 179.73002 * 9 8 7 12 12 C 1.46496 * 119.99614 * 180.02562 * 11 9 8 13 13 H 1.08995 * 110.01797 * 326.38330 * 12 11 9 14 14 C 1.54268 * 110.03584 * 87.83200 * 12 11 9 15 15 C 1.54891 * 104.19892 * 95.67177 * 14 12 11 16 16 C 1.54891 * 102.74670 * 37.94058 * 15 14 12 17 17 H 1.09006 * 110.48514 * 80.73981 * 16 15 14 18 18 C 1.50697 * 110.48631 * 203.37972 * 16 15 14 19 19 H 1.07999 * 119.99926 * 114.77510 * 18 16 15 20 20 C 1.37880 * 120.00075 * 294.78014 * 18 16 15 21 21 N 1.31522 * 119.99776 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99960 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47115 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46936 * 120.00008 * 22 20 18 25 25 H 1.48504 * 109.46879 * 239.99424 * 22 20 18 26 26 C 1.53874 * 110.02984 * 204.99576 * 12 11 9 27 27 S 1.70617 * 110.97282 * 0.22925 * 6 5 4 28 28 H 1.07999 * 123.36529 * 0.04968 * 4 3 2 29 29 H 1.08003 * 122.45364 * 180.02562 * 5 4 3 30 30 H 1.09007 * 109.46606 * 329.99865 * 7 6 5 31 31 H 1.09006 * 109.47204 * 210.00322 * 7 6 5 32 32 H 0.97000 * 120.00740 * 359.72841 * 8 7 6 33 33 H 0.96996 * 119.99887 * 359.97438 * 11 9 8 34 34 H 1.08997 * 110.48615 * 214.35414 * 14 12 11 35 35 H 1.09007 * 110.48250 * 336.99149 * 14 12 11 36 36 H 1.09003 * 110.75083 * 279.63346 * 15 14 12 37 37 H 1.08994 * 110.91359 * 156.32912 * 15 14 12 38 38 H 0.96996 * 119.99598 * 180.02562 * 21 20 18 39 39 H 1.09005 * 110.03246 * 0.02562 * 26 12 11 40 40 H 1.08997 * 110.03413 * 121.42927 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3604 0.4148 1.0331 5 6 4.7055 0.3079 0.7633 6 6 5.0045 -0.1756 -0.4470 7 6 6.4057 -0.3801 -0.9626 8 7 6.8613 -1.7288 -0.6168 9 6 8.0939 -2.1370 -0.9783 10 8 8.8258 -1.3877 -1.5957 11 7 8.5152 -3.3759 -0.6555 12 6 9.8551 -3.8194 -1.0479 13 1 10.1302 -3.3744 -2.0041 14 6 10.8807 -3.4244 0.0346 15 6 11.0131 -4.6929 0.9135 16 6 10.9408 -5.8384 -0.1265 17 1 11.9087 -5.9781 -0.6081 18 6 10.4865 -7.1174 0.5282 19 1 9.5404 -7.5589 0.2520 20 6 11.2787 -7.7238 1.4799 21 7 12.4311 -7.1863 1.8159 22 14 10.7159 -9.3096 2.2910 23 1 9.3941 -9.7046 1.7415 24 1 11.7060 -10.3827 2.0200 25 1 10.6000 -9.1018 3.7569 26 6 9.8933 -5.3542 -1.1504 27 16 3.5883 -0.5238 -1.3325 28 1 2.9701 0.7883 1.9683 29 1 5.4643 0.5937 1.4768 30 1 7.0705 0.3554 -0.5094 31 1 6.4155 -0.2598 -2.0460 32 1 6.2777 -2.3265 -0.1240 33 1 7.9314 -3.9736 -0.1627 34 1 11.8389 -3.1741 -0.4208 35 1 10.5082 -2.5877 0.6258 36 1 10.1864 -4.7606 1.6208 37 1 11.9692 -4.7058 1.4366 38 1 12.9885 -7.6131 2.4852 39 1 8.9147 -5.7691 -0.9085 40 1 10.1878 -5.6541 -2.1560 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420834847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:08 Heat of formation + Delta-G solvation = 1.186862 kcal Electronic energy + Delta-G solvation = -22794.190261 eV Core-core repulsion = 19313.389961 eV Total energy + Delta-G solvation = -3480.800299 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.13852 -39.43520 -38.75695 -37.61362 -35.73081 -35.16048 -33.69840 -31.61224 -29.89594 -28.84658 -27.56153 -25.71317 -24.44113 -22.26358 -21.92924 -21.06449 -20.88926 -19.83126 -18.77832 -18.47343 -17.46958 -17.23533 -16.67044 -16.42801 -15.89200 -15.73679 -15.58746 -15.24776 -15.00200 -14.60760 -14.52127 -14.39611 -13.99366 -13.79642 -13.51172 -13.45241 -13.14704 -12.93681 -12.84121 -12.73854 -12.42212 -12.29959 -12.12698 -11.85544 -11.60811 -11.39456 -11.25504 -11.02175 -10.75397 -10.41812 -10.27684 -9.84174 -9.66801 -9.55022 -8.06820 -6.15750 -0.65261 0.13161 0.83226 1.28374 1.43473 1.46561 1.56421 1.80150 1.94268 2.23749 2.25133 2.47565 2.84564 3.24768 3.44790 3.54580 4.02508 4.10173 4.16801 4.30293 4.38361 4.61152 4.69928 4.77461 4.83625 4.97497 5.00605 5.08457 5.12799 5.17821 5.25148 5.32934 5.35514 5.46236 5.50101 5.71283 5.79043 5.97057 6.03957 6.11358 6.31969 6.42986 6.96172 7.17451 7.51740 7.66916 9.02235 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.017203 B = 0.002351 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.259293 B =11909.442660 C =12896.533520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.303 3.697 3 C -0.186 4.186 4 C -0.044 4.044 5 C -0.118 4.118 6 C -0.217 4.217 7 C 0.211 3.789 8 N -0.733 5.733 9 C 0.703 3.297 10 O -0.633 6.633 11 N -0.723 5.723 12 C 0.172 3.828 13 H 0.075 0.925 14 C -0.125 4.125 15 C -0.088 4.088 16 C 0.037 3.963 17 H -0.001 1.001 18 C -0.522 4.522 19 H 0.059 0.941 20 C 0.009 3.991 21 N -0.921 5.921 22 Si 0.951 3.049 23 H -0.263 1.263 24 H -0.287 1.287 25 H -0.284 1.284 26 C -0.110 4.110 27 S 0.282 5.718 28 H 0.175 0.825 29 H 0.169 0.831 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.411 0.589 33 H 0.407 0.593 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.040 0.960 37 H 0.033 0.967 38 H 0.258 0.742 39 H 0.072 0.928 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.045 15.623 -3.008 23.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.012 4.012 3 C -0.307 4.307 4 C -0.081 4.081 5 C -0.150 4.150 6 C -0.338 4.338 7 C 0.085 3.915 8 N -0.391 5.391 9 C 0.403 3.597 10 O -0.515 6.515 11 N -0.378 5.378 12 C 0.066 3.934 13 H 0.093 0.907 14 C -0.164 4.164 15 C -0.126 4.126 16 C 0.019 3.981 17 H 0.017 0.983 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.189 4.189 21 N -0.561 5.561 22 Si 0.777 3.223 23 H -0.187 1.187 24 H -0.213 1.213 25 H -0.210 1.210 26 C -0.148 4.148 27 S 0.552 5.448 28 H 0.193 0.807 29 H 0.186 0.814 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.247 0.753 33 H 0.243 0.757 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.267 15.682 -4.982 24.586 hybrid contribution 0.461 -0.910 2.505 2.704 sum -17.806 14.772 -2.478 23.268 Atomic orbital electron populations 1.81344 1.12621 1.10836 1.08420 1.24540 0.91234 0.92386 0.93021 1.20559 0.88379 1.18526 1.03247 1.20997 0.91811 0.96398 0.98877 1.20204 0.96710 1.01411 0.96646 1.24183 1.00055 1.09021 1.00577 1.19485 0.88075 0.83615 1.00283 1.45021 1.14945 1.16820 1.62289 1.16049 0.82027 0.82123 0.79468 1.90890 1.56874 1.55613 1.48104 1.45254 1.17477 1.14163 1.60923 1.21285 0.80786 0.94372 0.96945 0.90671 1.22742 0.98554 0.97611 0.97524 1.22205 0.99046 0.93885 0.97475 1.19461 0.93273 0.93225 0.92177 0.98278 1.21591 1.04739 1.08410 1.21304 0.92258 1.25766 0.95072 1.00345 0.97733 1.70107 1.12344 1.40848 1.32820 0.85617 0.78537 0.79997 0.78149 1.18685 1.21292 1.21009 1.22427 1.00620 0.92345 0.99442 1.83460 0.91659 1.57387 1.12274 0.80742 0.81388 0.89300 0.90555 0.75308 0.75696 0.92212 0.92424 0.94108 0.94775 0.93320 0.90963 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.76 18.54 19.01 0.35 -9.41 16 2 C 0.30 4.85 15.83 88.33 1.40 6.25 16 3 C -0.19 -1.98 6.32 23.14 0.15 -1.83 16 4 C -0.04 -0.31 10.24 21.74 0.22 -0.09 16 5 C -0.12 -0.83 10.00 21.09 0.21 -0.62 16 6 C -0.22 -2.02 5.64 24.66 0.14 -1.89 16 7 C 0.21 2.90 6.10 85.63 0.52 3.42 16 8 N -0.73 -12.44 5.55 -482.29 -2.68 -15.12 16 9 C 0.70 18.65 8.56 179.05 1.53 20.18 16 10 O -0.63 -22.00 16.00 -3.99 -0.06 -22.06 16 11 N -0.72 -19.42 5.03 -454.35 -2.29 -21.70 16 12 C 0.17 5.70 3.25 45.72 0.15 5.85 16 13 H 0.08 2.58 7.56 -2.39 -0.02 2.57 16 14 C -0.13 -4.62 6.54 31.67 0.21 -4.42 16 15 C -0.09 -3.91 5.75 31.89 0.18 -3.73 16 16 C 0.04 1.76 2.72 -10.47 -0.03 1.73 16 17 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 18 C -0.52 -27.00 8.46 25.60 0.22 -26.79 16 19 H 0.06 2.95 7.54 -2.91 -0.02 2.93 16 20 C 0.01 0.49 5.35 84.65 0.45 0.95 16 21 N -0.92 -52.52 12.29 21.45 0.26 -52.25 16 22 Si 0.95 42.09 29.54 68.60 2.03 44.11 16 23 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 C -0.11 -4.03 6.13 31.32 0.19 -3.84 16 27 S 0.28 2.64 23.01 -56.49 -1.30 1.34 16 28 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 29 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 30 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.41 5.00 8.48 -92.71 -0.79 4.22 16 33 H 0.41 9.19 8.34 -92.71 -0.77 8.42 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.06 2.04 8.04 -2.38 -0.02 2.02 16 36 H 0.04 1.82 8.05 -2.39 -0.02 1.80 16 37 H 0.03 1.71 7.55 -2.39 -0.02 1.69 16 38 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 39 H 0.07 2.48 7.13 -2.38 -0.02 2.46 16 40 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -68.10 359.99 1.39 -66.70 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -0.47 Total: 13.21 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 5.54 Total: -4.82 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -4.35 Total: -98.49 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.06 Total: -22.06 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -1.30 Total: 1.34 kcal Total: -68.10 1.39 -66.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420834847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.892 kcal (2) G-P(sol) polarization free energy of solvation -68.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds