Wall clock time and date at job start Tue Mar 31 2020 12:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.27887 * 124.23085 * 2 1 4 4 C 1.34740 * 117.84950 * 179.97438 * 3 2 1 5 5 C 1.41005 * 129.59985 * 180.02562 * 4 3 2 6 6 C 1.36075 * 120.52439 * 179.97438 * 5 4 3 7 7 C 1.39382 * 120.70640 * 359.97438 * 6 5 4 8 8 N 1.40029 * 120.04491 * 180.02562 * 7 6 5 9 9 C 1.34769 * 119.99860 * 146.76708 * 8 7 6 10 10 O 1.21294 * 120.00419 * 354.73287 * 9 8 7 11 11 C 1.50706 * 120.00106 * 174.73240 * 9 8 7 12 12 H 1.09007 * 109.46929 * 320.00758 * 11 9 8 13 13 N 1.46895 * 109.47278 * 200.00185 * 11 9 8 14 14 C 1.52997 * 109.46986 * 79.99950 * 11 9 8 15 15 C 1.53004 * 109.47300 * 185.00140 * 14 11 9 16 16 C 1.50702 * 109.47361 * 180.02562 * 15 14 11 17 17 H 1.08000 * 119.99626 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00042 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99853 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00031 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47168 * 60.00250 * 20 18 16 22 22 H 1.48502 * 109.47337 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47393 * 299.99994 * 20 18 16 24 24 C 1.38257 * 119.91481 * 0.28086 * 7 6 5 25 25 C 1.39282 * 119.89945 * 359.45218 * 24 7 6 26 26 S 1.70644 * 124.22953 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.47200 * 90.02620 * 1 2 3 28 28 H 1.09003 * 109.47800 * 210.02821 * 1 2 3 29 29 H 1.09006 * 109.47249 * 330.03105 * 1 2 3 30 30 H 1.08000 * 119.73831 * 359.93438 * 5 4 3 31 31 H 1.07997 * 119.64600 * 179.97438 * 6 5 4 32 32 H 0.96999 * 120.00263 * 326.77898 * 8 7 6 33 33 H 1.00895 * 111.00035 * 299.99663 * 13 11 9 34 34 H 1.00902 * 111.00180 * 63.96084 * 13 11 9 35 35 H 1.09004 * 109.47201 * 65.00397 * 14 11 9 36 36 H 1.09001 * 109.47673 * 305.00132 * 14 11 9 37 37 H 1.09004 * 109.46784 * 60.00001 * 15 14 11 38 38 H 1.09001 * 109.47192 * 300.00256 * 15 14 11 39 39 H 0.96999 * 119.99804 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.05113 * 179.69181 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2264 1.0573 0.0000 4 6 3.5654 0.9076 0.0005 5 6 4.5794 1.8874 0.0011 6 6 5.8909 1.5248 0.0022 7 6 6.2575 0.1800 0.0031 8 7 7.6114 -0.1776 0.0047 9 6 8.0129 -1.2932 0.6453 10 8 7.2192 -1.9357 1.2999 11 6 9.4481 -1.7427 0.5483 12 1 9.8074 -1.5938 -0.4700 13 7 9.5399 -3.1668 0.8967 14 6 10.3052 -0.9245 1.5161 15 6 11.7784 -1.2928 1.3291 16 6 12.6226 -0.4874 2.2829 17 1 12.1551 0.2165 2.9555 18 6 13.9918 -0.6490 2.2968 19 7 14.5611 -1.5058 1.4774 20 14 15.0381 0.3488 3.4795 21 1 14.6276 0.0514 4.8754 22 1 16.4681 -0.0077 3.2970 23 1 14.8506 1.7963 3.2061 24 6 5.2827 -0.8004 -0.0028 25 6 3.9370 -0.4415 0.0018 26 16 2.4668 -1.4109 0.0006 27 1 -0.3634 -0.0005 -1.0277 28 1 -0.3635 -0.8897 0.5143 29 1 -0.3634 0.8903 0.5134 30 1 4.3130 2.9341 0.0002 31 1 6.6560 2.2870 0.0022 32 1 8.2603 0.3778 -0.4551 33 1 9.2124 -3.3308 1.8368 34 1 9.0344 -3.7347 0.2333 35 1 10.0038 -1.1415 2.5409 36 1 10.1679 0.1378 1.3142 37 1 12.0799 -1.0758 0.3043 38 1 11.9159 -2.3551 1.5310 39 1 15.5243 -1.6198 1.4875 40 1 5.5643 -1.8430 -0.0071 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424079275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:50 Heat of formation + Delta-G solvation = 9.392783 kcal Electronic energy + Delta-G solvation = -23030.769320 eV Core-core repulsion = 19550.324856 eV Total energy + Delta-G solvation = -3480.444464 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.03591 -39.96924 -37.52651 -35.36244 -34.56239 -32.87192 -31.63022 -31.09657 -30.19778 -28.17749 -26.33058 -24.37383 -24.05437 -22.68065 -21.17645 -20.74225 -19.94295 -18.85295 -17.85095 -17.34519 -16.32040 -15.83497 -15.77981 -15.64743 -15.35203 -14.79783 -14.60977 -14.37498 -14.03966 -13.64638 -13.61512 -13.52538 -13.42689 -12.91665 -12.54250 -12.41195 -12.13485 -12.03388 -11.64531 -11.22631 -10.91583 -10.78233 -10.64467 -10.42873 -10.32414 -10.17203 -9.89060 -9.85917 -9.45464 -9.07298 -8.61097 -8.48668 -8.28979 -8.03778 -5.98053 -4.00630 0.14272 0.89625 0.97162 1.47595 1.94377 2.56369 2.90866 3.33407 3.38296 3.40505 3.45645 3.59391 4.34735 4.46050 4.60925 4.67524 4.83256 4.86803 4.90208 5.01976 5.05507 5.16845 5.36191 5.38814 5.43695 5.50530 5.66547 5.72103 5.86232 5.97895 6.07134 6.30904 6.52702 6.57552 6.98347 7.13302 7.35239 7.36286 7.65708 7.70257 7.89304 7.98802 8.07084 8.42703 9.06880 9.62828 11.12690 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.029809 B = 0.002291 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.086988 B =12216.981271 C =12813.096623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.079 3.921 3 N -0.463 5.463 4 C 0.059 3.941 5 C -0.043 4.043 6 C -0.127 4.127 7 C 0.172 3.828 8 N -0.671 5.671 9 C 0.483 3.517 10 O -0.530 6.530 11 C 0.081 3.919 12 H 0.104 0.896 13 N -0.804 5.804 14 C -0.097 4.097 15 C 0.032 3.968 16 C -0.525 4.525 17 H 0.052 0.948 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.081 4.081 25 C -0.158 4.158 26 S 0.098 5.902 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.418 0.582 33 H 0.350 0.650 34 H 0.335 0.665 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.014 0.986 38 H 0.036 0.964 39 H 0.260 0.740 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.841 2.985 -7.107 26.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.206 4.206 3 N -0.178 5.178 4 C -0.061 4.061 5 C -0.065 4.065 6 C -0.149 4.149 7 C 0.073 3.927 8 N -0.317 5.317 9 C 0.270 3.730 10 O -0.405 6.405 11 C -0.035 4.035 12 H 0.122 0.878 13 N -0.332 5.332 14 C -0.136 4.136 15 C -0.005 4.005 16 C -0.563 4.563 17 H 0.070 0.930 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.204 1.204 24 C -0.107 4.107 25 C -0.277 4.277 26 S 0.353 5.647 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.255 0.745 33 H 0.164 0.836 34 H 0.147 0.853 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -25.913 1.922 -6.785 26.856 hybrid contribution 0.549 1.613 0.559 1.793 sum -25.364 3.535 -6.226 26.355 Atomic orbital electron populations 1.20533 0.84906 1.04475 1.04156 1.26641 1.01719 0.90951 1.01265 1.66135 1.04131 1.31370 1.16117 1.19115 0.89116 0.91704 1.06129 1.20145 0.89789 0.98554 0.97981 1.20569 0.96501 0.94625 1.03249 1.17627 0.84178 0.92605 0.98324 1.43918 1.06299 1.27492 1.54015 1.23221 0.93545 0.79332 0.76878 1.90681 1.55916 1.54508 1.39392 1.21918 0.87427 0.90868 1.03262 0.87820 1.58982 1.62833 1.03170 1.08246 1.21711 0.98774 0.96573 0.96511 1.19015 0.86641 0.98182 0.96699 1.21220 0.91756 1.22883 1.20441 0.93016 1.24990 0.98111 0.95440 0.95773 1.69959 1.10471 1.35249 1.37410 0.86699 0.79354 0.80507 0.81646 1.20305 1.21317 1.20356 1.20170 0.88346 1.00387 1.01800 1.23588 0.98449 0.96445 1.09221 1.83965 0.95559 1.10489 1.74682 0.89286 0.89797 0.89070 0.84288 0.84015 0.74470 0.83604 0.85270 0.92636 0.92680 0.96786 0.94606 0.92992 0.84060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.44 36.00 0.38 -0.09 16 2 C 0.08 0.80 7.28 -13.92 -0.10 0.70 16 3 N -0.46 -5.76 10.57 -9.08 -0.10 -5.86 16 4 C 0.06 0.76 7.00 -84.91 -0.59 0.17 16 5 C -0.04 -0.47 10.04 -39.31 -0.39 -0.86 16 6 C -0.13 -1.31 9.86 -39.93 -0.39 -1.70 16 7 C 0.17 2.11 6.28 -83.68 -0.53 1.59 16 8 N -0.67 -7.89 5.35 -9.86 -0.05 -7.94 16 9 C 0.48 6.97 6.80 -10.99 -0.07 6.89 16 10 O -0.53 -8.99 13.95 5.55 0.08 -8.91 16 11 C 0.08 1.24 3.15 -68.87 -0.22 1.03 16 12 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 13 N -0.80 -12.56 8.44 -5.65 -0.05 -12.60 16 14 C -0.10 -1.84 4.78 -26.73 -0.13 -1.97 16 15 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 16 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 17 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 20 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.08 -1.10 8.68 -39.19 -0.34 -1.44 16 25 C -0.16 -2.05 6.55 -38.56 -0.25 -2.30 16 26 S 0.10 1.03 23.11 -107.50 -2.48 -1.46 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.42 3.79 8.82 -40.82 -0.36 3.43 16 33 H 0.35 5.57 8.58 -39.29 -0.34 5.23 16 34 H 0.34 4.46 9.06 -39.29 -0.36 4.10 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.04 0.96 7.75 -51.93 -0.40 0.56 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.14 2.03 6.42 -52.49 -0.34 1.69 16 LS Contribution 355.64 15.07 5.36 5.36 Total: -1.00 -33.68 355.64 -9.86 -43.53 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.14 Total: 7.72 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -3.19 Total: -10.58 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.54 Total: -52.08 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.48 Total: -1.46 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.68 -9.86 -43.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424079275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.927 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds