Wall clock time and date at job start Tue Mar 31 2020 12:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.27887 * 124.23085 * 2 1 4 4 C 1.34740 * 117.84950 * 179.97438 * 3 2 1 5 5 C 1.41005 * 129.59985 * 180.02562 * 4 3 2 6 6 C 1.36075 * 120.52439 * 179.97438 * 5 4 3 7 7 C 1.39382 * 120.70640 * 359.97438 * 6 5 4 8 8 N 1.40029 * 120.04491 * 180.02562 * 7 6 5 9 9 C 1.34769 * 119.99860 * 146.76708 * 8 7 6 10 10 O 1.21294 * 120.00419 * 354.73287 * 9 8 7 11 11 C 1.50706 * 120.00106 * 174.73240 * 9 8 7 12 12 H 1.09007 * 109.46929 * 320.00758 * 11 9 8 13 13 N 1.46895 * 109.47278 * 200.00185 * 11 9 8 14 14 C 1.52997 * 109.46986 * 79.99950 * 11 9 8 15 15 C 1.53004 * 109.47300 * 185.00140 * 14 11 9 16 16 C 1.50702 * 109.47361 * 180.02562 * 15 14 11 17 17 H 1.08000 * 119.99626 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00042 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99853 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00031 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47168 * 60.00250 * 20 18 16 22 22 H 1.48502 * 109.47337 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47393 * 299.99994 * 20 18 16 24 24 C 1.38257 * 119.91481 * 0.28086 * 7 6 5 25 25 C 1.39282 * 119.89945 * 359.45218 * 24 7 6 26 26 S 1.70644 * 124.22953 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.47200 * 90.02620 * 1 2 3 28 28 H 1.09003 * 109.47800 * 210.02821 * 1 2 3 29 29 H 1.09006 * 109.47249 * 330.03105 * 1 2 3 30 30 H 1.08000 * 119.73831 * 359.93438 * 5 4 3 31 31 H 1.07997 * 119.64600 * 179.97438 * 6 5 4 32 32 H 0.96999 * 120.00263 * 326.77898 * 8 7 6 33 33 H 1.00895 * 111.00035 * 299.99663 * 13 11 9 34 34 H 1.00902 * 111.00180 * 63.96084 * 13 11 9 35 35 H 1.09004 * 109.47201 * 65.00397 * 14 11 9 36 36 H 1.09001 * 109.47673 * 305.00132 * 14 11 9 37 37 H 1.09004 * 109.46784 * 60.00001 * 15 14 11 38 38 H 1.09001 * 109.47192 * 300.00256 * 15 14 11 39 39 H 0.96999 * 119.99804 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.05113 * 179.69181 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2264 1.0573 0.0000 4 6 3.5654 0.9076 0.0005 5 6 4.5794 1.8874 0.0011 6 6 5.8909 1.5248 0.0022 7 6 6.2575 0.1800 0.0031 8 7 7.6114 -0.1776 0.0047 9 6 8.0129 -1.2932 0.6453 10 8 7.2192 -1.9357 1.2999 11 6 9.4481 -1.7427 0.5483 12 1 9.8074 -1.5938 -0.4700 13 7 9.5399 -3.1668 0.8967 14 6 10.3052 -0.9245 1.5161 15 6 11.7784 -1.2928 1.3291 16 6 12.6226 -0.4874 2.2829 17 1 12.1551 0.2165 2.9555 18 6 13.9918 -0.6490 2.2968 19 7 14.5611 -1.5058 1.4774 20 14 15.0381 0.3488 3.4795 21 1 14.6276 0.0514 4.8754 22 1 16.4681 -0.0077 3.2970 23 1 14.8506 1.7963 3.2061 24 6 5.2827 -0.8004 -0.0028 25 6 3.9370 -0.4415 0.0018 26 16 2.4668 -1.4109 0.0006 27 1 -0.3634 -0.0005 -1.0277 28 1 -0.3635 -0.8897 0.5143 29 1 -0.3634 0.8903 0.5134 30 1 4.3130 2.9341 0.0002 31 1 6.6560 2.2870 0.0022 32 1 8.2603 0.3778 -0.4551 33 1 9.2124 -3.3308 1.8368 34 1 9.0344 -3.7347 0.2333 35 1 10.0038 -1.1415 2.5409 36 1 10.1679 0.1378 1.3142 37 1 12.0799 -1.0758 0.3043 38 1 11.9159 -2.3551 1.5310 39 1 15.5243 -1.6198 1.4875 40 1 5.5643 -1.8430 -0.0071 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424079275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:50 Heat of formation + Delta-G solvation = -14.519870 kcal Electronic energy + Delta-G solvation = -23031.806251 eV Core-core repulsion = 19550.324856 eV Total energy + Delta-G solvation = -3481.481394 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.01703 -40.97018 -38.47548 -36.82630 -35.54137 -34.82384 -32.40103 -31.94969 -31.88877 -29.15116 -27.83808 -25.67415 -25.12790 -23.80726 -22.29811 -21.98269 -21.19964 -19.73538 -18.86012 -18.58744 -18.13306 -17.04994 -16.73358 -16.71287 -16.45625 -16.16112 -15.83633 -15.65932 -15.11472 -14.92867 -14.38098 -14.34468 -14.26249 -14.11557 -13.84123 -13.68331 -13.43670 -13.10581 -12.87843 -12.77050 -12.54220 -12.29803 -12.10428 -11.77396 -11.64508 -11.30864 -11.23051 -11.15447 -11.01647 -10.72690 -10.47455 -9.71062 -9.44541 -8.96218 -8.12865 -6.22676 -0.71429 0.02065 0.15071 0.64381 0.99926 1.42880 1.45104 1.49490 1.52986 1.89254 2.45291 2.56854 2.87399 3.20425 3.42643 3.54079 3.70928 3.92267 4.01596 4.06747 4.12587 4.27279 4.28425 4.53664 4.59704 4.64840 4.77258 4.88094 4.93102 4.95525 5.04748 5.13617 5.21999 5.25748 5.58581 5.65051 5.85928 5.99863 6.03579 6.26396 6.31228 6.48488 6.52564 6.91968 6.96197 7.45347 8.97894 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.029809 B = 0.002291 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.086988 B =12216.981271 C =12813.096623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.086 3.914 3 N -0.490 5.490 4 C 0.045 3.955 5 C -0.048 4.048 6 C -0.116 4.116 7 C 0.157 3.843 8 N -0.656 5.656 9 C 0.491 3.509 10 O -0.557 6.557 11 C 0.091 3.909 12 H 0.120 0.880 13 N -0.817 5.817 14 C -0.085 4.085 15 C 0.039 3.961 16 C -0.543 4.543 17 H 0.056 0.944 18 C 0.001 3.999 19 N -0.929 5.929 20 Si 0.958 3.042 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.266 1.266 24 C -0.096 4.096 25 C -0.186 4.186 26 S 0.108 5.892 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.162 0.838 31 H 0.174 0.826 32 H 0.432 0.568 33 H 0.346 0.654 34 H 0.348 0.652 35 H 0.043 0.957 36 H 0.073 0.927 37 H -0.003 1.003 38 H 0.005 0.995 39 H 0.261 0.739 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.145 4.757 -7.074 28.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.198 4.198 3 N -0.205 5.205 4 C -0.075 4.075 5 C -0.069 4.069 6 C -0.138 4.138 7 C 0.058 3.942 8 N -0.303 5.303 9 C 0.278 3.722 10 O -0.434 6.434 11 C -0.025 4.025 12 H 0.138 0.862 13 N -0.346 5.346 14 C -0.123 4.123 15 C 0.002 3.998 16 C -0.581 4.581 17 H 0.074 0.926 18 C -0.197 4.197 19 N -0.569 5.569 20 Si 0.783 3.217 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.190 1.190 24 C -0.122 4.122 25 C -0.305 4.305 26 S 0.364 5.636 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.179 0.821 31 H 0.191 0.809 32 H 0.272 0.728 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.016 0.984 38 H 0.024 0.976 39 H 0.070 0.930 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -27.231 3.717 -6.778 28.307 hybrid contribution 0.839 1.031 0.513 1.425 sum -26.392 4.748 -6.264 27.538 Atomic orbital electron populations 1.20774 0.81851 1.05793 1.05739 1.27433 1.03368 0.90177 0.98850 1.66225 1.04044 1.32211 1.18009 1.19540 0.89903 0.92084 1.05950 1.20487 0.89601 0.99402 0.97391 1.20849 0.97118 0.94241 1.01615 1.17790 0.83812 0.93403 0.99163 1.43687 1.06679 1.26638 1.53256 1.22813 0.92732 0.79819 0.76868 1.90680 1.56390 1.55556 1.40777 1.21696 0.87638 0.90250 1.02943 0.86244 1.58973 1.63399 1.03721 1.08530 1.21442 0.95720 0.98257 0.96867 1.18831 0.90038 0.95951 0.95023 1.21707 0.92531 1.23058 1.20827 0.92565 1.25883 0.99672 0.96580 0.97522 1.70092 1.10765 1.36880 1.39159 0.85620 0.77391 0.79381 0.79337 1.19757 1.21108 1.19036 1.20132 0.89148 0.99942 1.02948 1.23805 0.98992 0.97409 1.10326 1.83866 0.94708 1.10618 1.74456 0.87390 0.87754 0.88389 0.82051 0.80905 0.72803 0.83965 0.83843 0.93850 0.90825 0.98442 0.97614 0.92983 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.44 71.23 0.74 0.00 16 2 C 0.09 1.62 7.28 88.68 0.65 2.27 16 3 N -0.49 -11.65 10.57 -182.45 -1.93 -13.58 16 4 C 0.05 1.12 7.00 39.78 0.28 1.40 16 5 C -0.05 -0.95 10.04 22.44 0.23 -0.73 16 6 C -0.12 -2.15 9.86 22.04 0.22 -1.93 16 7 C 0.16 3.70 6.28 38.11 0.24 3.94 16 8 N -0.66 -14.51 5.35 -303.49 -1.62 -16.13 16 9 C 0.49 13.84 6.80 87.66 0.60 14.44 16 10 O -0.56 -18.96 13.95 -3.07 -0.04 -19.00 16 11 C 0.09 2.73 3.15 44.17 0.14 2.87 16 12 H 0.12 3.22 8.14 -2.38 -0.02 3.20 16 13 N -0.82 -25.73 8.44 -171.80 -1.45 -27.18 16 14 C -0.08 -3.16 4.78 30.59 0.15 -3.02 16 15 C 0.04 1.93 4.86 29.85 0.15 2.07 16 16 C -0.54 -29.98 9.11 25.60 0.23 -29.74 16 17 H 0.06 2.98 7.74 -2.91 -0.02 2.96 16 18 C 0.00 0.08 5.46 84.65 0.46 0.54 16 19 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 20 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 24 C -0.10 -2.61 8.68 22.53 0.20 -2.41 16 25 C -0.19 -4.83 6.55 22.93 0.15 -4.68 16 26 S 0.11 2.21 23.11 -56.49 -1.31 0.90 16 27 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 31 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 32 H 0.43 6.89 8.82 -92.71 -0.82 6.08 16 33 H 0.35 11.26 8.58 -89.70 -0.77 10.49 16 34 H 0.35 9.28 9.06 -89.69 -0.81 8.47 16 35 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 38 H 0.01 0.30 7.75 -2.39 -0.02 0.28 16 39 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.12 3.72 6.42 -2.91 -0.02 3.70 16 Total: -1.00 -73.55 355.64 -0.91 -74.47 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -1.29 Total: 25.16 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 4.42 Total: -14.99 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -4.72 Total: -112.31 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.04 Total: -19.00 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.31 Total: 0.90 kcal Total: -73.55 -0.91 -74.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424079275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.945 kcal (2) G-P(sol) polarization free energy of solvation -73.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds