Wall clock time and date at job start Tue Mar 31 2020 12:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37210 * 119.78311 * 2 1 4 4 C 1.38698 * 120.60695 * 179.68847 * 3 2 1 5 5 C 1.37736 * 119.98530 * 0.59898 * 4 3 2 6 6 C 1.39254 * 120.19377 * 359.69878 * 5 4 3 7 7 S 1.76194 * 131.19960 * 180.02562 * 6 5 4 8 8 C 1.75809 * 90.43646 * 179.97438 * 7 6 5 9 9 N 1.38547 * 124.80595 * 180.02562 * 8 7 6 10 10 C 1.34767 * 120.00215 * 359.96010 * 9 8 7 11 11 O 1.21270 * 120.00311 * 359.97438 * 10 9 8 12 12 C 1.50699 * 120.00087 * 179.97438 * 10 9 8 13 13 H 1.09000 * 109.46807 * 39.99857 * 12 10 9 14 14 N 1.46902 * 109.47342 * 159.99929 * 12 10 9 15 15 C 1.53001 * 109.47089 * 280.00327 * 12 10 9 16 16 C 1.53008 * 109.47027 * 174.99931 * 15 12 10 17 17 C 1.50697 * 109.47082 * 180.02562 * 16 15 12 18 18 H 1.08009 * 119.99949 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00065 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99819 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00227 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46917 * 89.99911 * 21 19 17 23 23 H 1.48499 * 109.47385 * 210.00282 * 21 19 17 24 24 H 1.48504 * 109.46868 * 330.00034 * 21 19 17 25 25 N 1.28776 * 110.37923 * 0.02562 * 8 7 6 26 26 C 1.34745 * 117.92312 * 359.97438 * 25 8 7 27 27 H 1.09002 * 109.47152 * 269.72730 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.72831 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.72812 * 1 2 3 30 30 H 1.07997 * 119.69830 * 359.97438 * 3 2 1 31 31 H 1.07994 * 120.01048 * 180.31959 * 4 3 2 32 32 H 1.07998 * 119.90271 * 179.71315 * 5 4 3 33 33 H 0.96999 * 119.99576 * 179.97438 * 9 8 7 34 34 H 1.00898 * 110.99856 * 296.04654 * 14 12 10 35 35 H 1.00897 * 110.99673 * 60.00124 * 14 12 10 36 36 H 1.08997 * 109.47120 * 294.99394 * 15 12 10 37 37 H 1.09000 * 109.47380 * 54.99996 * 15 12 10 38 38 H 1.08997 * 109.46732 * 299.99700 * 16 15 12 39 39 H 1.08993 * 109.47027 * 59.99482 * 16 15 12 40 40 H 0.97003 * 119.99974 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.1909 0.0000 4 6 3.5754 1.2108 0.0065 5 6 4.2809 0.0279 0.0005 6 6 3.6059 -1.1901 -0.0057 7 16 4.2029 -2.8478 -0.0134 8 6 2.5534 -3.4561 -0.0163 9 7 2.2050 -4.7970 -0.0221 10 6 3.1651 -5.7427 -0.0268 11 8 4.3341 -5.4201 -0.0264 12 6 2.7861 -7.2013 -0.0325 13 1 1.9323 -7.3522 -0.6930 14 7 3.9222 -8.0006 -0.5104 15 6 2.4165 -7.6377 1.3866 16 6 1.9128 -9.0823 1.3610 17 6 1.5482 -9.5120 2.7586 18 1 1.6645 -8.8237 3.5828 19 6 1.0661 -10.7837 2.9852 20 7 0.9241 -11.6215 1.9815 21 14 0.6148 -11.3166 4.7177 22 1 -0.8121 -10.9977 4.9778 23 1 0.8285 -12.7795 4.8572 24 1 1.4692 -10.5961 5.6956 25 7 1.7150 -2.4786 -0.0123 26 6 2.2078 -1.2246 -0.0063 27 1 -0.3633 -0.0049 1.0277 28 1 -0.3633 -0.8876 -0.5181 29 1 -0.3633 0.8924 -0.5096 30 1 1.6401 2.1212 -0.0004 31 1 4.1020 2.1536 0.0116 32 1 5.3607 0.0450 0.0009 33 1 1.2700 -5.0551 -0.0230 34 1 4.1445 -7.7762 -1.4687 35 1 4.7269 -7.8778 0.0857 36 1 3.2953 -7.5707 2.0278 37 1 1.6331 -6.9866 1.7746 38 1 1.0340 -9.1493 0.7198 39 1 2.6961 -9.7333 0.9730 40 1 0.5846 -12.5161 2.1408 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424086048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:32 Heat of formation + Delta-G solvation = -13.181865 kcal Electronic energy + Delta-G solvation = -23106.067784 eV Core-core repulsion = 19624.644410 eV Total energy + Delta-G solvation = -3481.423374 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.89288 -41.17349 -38.26620 -36.97974 -35.73910 -34.86380 -33.76481 -31.98427 -30.64089 -28.51872 -27.69342 -26.29687 -25.06191 -23.30667 -22.62705 -22.24898 -21.45495 -19.38734 -18.88619 -18.35552 -18.20896 -17.26137 -16.84402 -16.69277 -16.55100 -16.29415 -15.92285 -15.55948 -15.38898 -15.15987 -14.35292 -14.31427 -14.17207 -13.91417 -13.56602 -13.48772 -13.25661 -13.05926 -12.81204 -12.62539 -12.49432 -12.34875 -12.19747 -11.73853 -11.55695 -11.48905 -11.27000 -11.06206 -10.90646 -10.87774 -10.49132 -9.82844 -9.29920 -8.97855 -8.14326 -6.23808 -0.67032 -0.10502 0.15521 0.69896 0.84000 1.33757 1.42055 1.42839 1.53160 1.54954 2.44144 2.67476 3.13585 3.19377 3.38540 3.60552 3.68250 3.98795 4.01224 4.19776 4.26613 4.30746 4.42044 4.59260 4.70456 4.76028 4.79457 4.86384 4.87528 5.14643 5.21652 5.26205 5.34733 5.46191 5.56556 5.58366 5.84038 5.86401 5.98534 6.05615 6.29592 6.44036 6.53202 6.54000 6.94946 7.44327 8.96686 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.020543 B = 0.002585 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.674156 B =10827.221568 C =11556.027221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.056 4.056 3 C -0.104 4.104 4 C -0.095 4.095 5 C -0.085 4.085 6 C -0.230 4.230 7 S 0.145 5.855 8 C 0.304 3.696 9 N -0.613 5.613 10 C 0.493 3.507 11 O -0.525 6.525 12 C 0.100 3.900 13 H 0.126 0.874 14 N -0.812 5.812 15 C -0.086 4.086 16 C 0.039 3.961 17 C -0.543 4.543 18 H 0.055 0.945 19 C 0.003 3.997 20 N -0.928 5.928 21 Si 0.956 3.044 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.268 1.268 25 N -0.517 5.517 26 C 0.072 3.928 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.168 0.832 31 H 0.171 0.829 32 H 0.144 0.856 33 H 0.437 0.563 34 H 0.352 0.648 35 H 0.351 0.649 36 H 0.049 0.951 37 H 0.068 0.932 38 H -0.002 1.002 39 H 0.011 0.989 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.529 27.387 -6.954 28.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.059 4.059 3 C -0.125 4.125 4 C -0.116 4.116 5 C -0.108 4.108 6 C -0.349 4.349 7 S 0.395 5.605 8 C -0.070 4.070 9 N -0.265 5.265 10 C 0.279 3.721 11 O -0.400 6.400 12 C -0.016 4.016 13 H 0.143 0.857 14 N -0.341 5.341 15 C -0.125 4.125 16 C 0.002 3.998 17 C -0.582 4.582 18 H 0.073 0.927 19 C -0.195 4.195 20 N -0.568 5.568 21 Si 0.781 3.219 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.192 1.192 25 N -0.240 5.240 26 C -0.048 4.048 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.185 0.815 31 H 0.188 0.812 32 H 0.162 0.838 33 H 0.279 0.721 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.016 0.984 39 H 0.029 0.971 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.266 25.974 -6.877 27.205 hybrid contribution -0.759 0.488 0.693 1.137 sum 3.507 26.462 -6.184 27.400 Atomic orbital electron populations 1.20747 0.89246 1.03487 1.02910 1.19893 0.97319 0.89425 0.99284 1.21279 0.94774 0.97385 0.99040 1.21560 0.94199 0.98315 0.97521 1.20652 1.00735 0.89212 1.00228 1.24546 0.97768 1.00856 1.11733 1.85939 1.04385 0.93902 1.76273 1.23907 0.93833 0.89469 0.99780 1.43152 1.13198 1.00162 1.69944 1.23372 0.85023 0.90416 0.73311 1.90602 1.19098 1.81873 1.48462 1.21708 0.97342 0.82040 1.00514 0.85652 1.58971 1.10163 1.56951 1.08053 1.21477 1.00281 0.98874 0.91853 1.18828 0.95083 0.91091 0.94788 1.21724 1.42782 0.98376 0.95276 0.92708 1.25850 0.95850 0.96959 1.00813 1.70089 1.47099 1.06946 1.32689 0.85587 0.78765 0.77314 0.80204 1.19829 1.20963 1.19199 1.66126 1.36399 0.98396 1.23094 1.18945 0.90133 0.90419 1.05257 0.90702 0.92482 0.88810 0.81470 0.81162 0.83795 0.72081 0.83392 0.83501 0.93196 0.91319 0.98386 0.97096 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 9.94 71.24 0.71 -1.05 16 2 C -0.06 -1.13 5.93 -19.40 -0.12 -1.25 16 3 C -0.10 -1.44 9.62 22.14 0.21 -1.22 16 4 C -0.09 -1.22 10.05 22.26 0.22 -1.00 16 5 C -0.09 -1.57 10.06 22.40 0.23 -1.34 16 6 C -0.23 -5.83 6.52 22.90 0.15 -5.68 16 7 S 0.15 4.04 20.41 -56.49 -1.15 2.89 16 8 C 0.30 8.80 8.31 179.60 1.49 10.29 16 9 N -0.61 -15.85 5.39 -310.89 -1.67 -17.52 16 10 C 0.49 13.83 7.03 87.66 0.62 14.44 16 11 O -0.53 -16.61 13.69 -3.00 -0.04 -16.65 16 12 C 0.10 2.94 3.15 44.17 0.14 3.08 16 13 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 14 N -0.81 -24.01 8.44 -171.80 -1.45 -25.46 16 15 C -0.09 -3.22 4.78 30.60 0.15 -3.07 16 16 C 0.04 1.94 4.86 29.85 0.15 2.09 16 17 C -0.54 -30.05 9.11 25.60 0.23 -29.82 16 18 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 19 C 0.00 0.19 5.46 84.65 0.46 0.65 16 20 N -0.93 -55.55 13.29 21.45 0.28 -55.26 16 21 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 N -0.52 -15.11 10.30 -188.87 -1.95 -17.06 16 26 C 0.07 1.92 6.72 39.79 0.27 2.19 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.13 7.91 -2.39 -0.02 1.11 16 29 H 0.09 0.99 8.08 -2.38 -0.02 0.97 16 30 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 31 H 0.17 0.89 8.06 -2.91 -0.02 0.86 16 32 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.44 9.42 8.82 -92.71 -0.82 8.60 16 34 H 0.35 8.64 9.06 -89.70 -0.81 7.83 16 35 H 0.35 10.49 8.58 -89.70 -0.77 9.72 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.01 0.58 7.75 -2.39 -0.02 0.56 16 40 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -70.94 355.04 -0.34 -71.29 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -1.30 Total: 23.48 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 4.90 Total: -11.69 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -4.79 Total: -115.30 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.04 Total: -16.65 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.15 Total: 2.89 kcal Total: -70.94 -0.34 -71.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424086048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.108 kcal (2) G-P(sol) polarization free energy of solvation -70.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds