Wall clock time and date at job start Tue Mar 31 2020 12:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38114 * 120.02731 * 2 1 4 4 C 1.38470 * 120.04466 * 180.02562 * 3 2 1 5 5 F 1.35098 * 119.95828 * 180.02562 * 4 3 2 6 6 C 1.38519 * 120.08918 * 0.02562 * 4 3 2 7 7 C 1.38072 * 120.03978 * 359.70449 * 6 4 3 8 8 C 1.38841 * 120.01849 * 180.02562 * 2 1 3 9 9 N 1.40141 * 120.04435 * 359.95886 * 8 2 1 10 10 C 1.36098 * 124.93406 * 132.50296 * 9 8 2 11 11 C 1.35771 * 107.06232 * 179.72427 * 10 9 8 12 12 O 1.36080 * 127.26281 * 180.23531 * 11 10 9 13 13 C 1.41816 * 105.47941 * 0.38550 * 11 10 9 14 14 C 1.47468 * 126.44892 * 179.87473 * 13 11 10 15 15 O 1.21607 * 119.99470 * 359.71232 * 14 13 11 16 16 N 1.34770 * 120.00260 * 179.70912 * 14 13 11 17 17 C 1.46499 * 120.00107 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47290 * 179.72286 * 17 16 14 19 19 H 1.08000 * 119.99775 * 0.02562 * 18 17 16 20 20 C 1.37873 * 119.99938 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99962 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99878 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46886 * 60.00490 * 22 20 18 24 24 H 1.48497 * 109.47231 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47320 * 300.00835 * 22 20 18 26 26 N 1.28458 * 124.93112 * 312.48130 * 9 8 2 27 27 H 1.09000 * 109.47093 * 264.60666 * 1 2 3 28 28 H 1.09009 * 109.46517 * 24.60033 * 1 2 3 29 29 H 1.08994 * 109.47680 * 144.59857 * 1 2 3 30 30 H 1.07998 * 119.97249 * 359.97438 * 3 2 1 31 31 H 1.07989 * 119.98145 * 179.97438 * 6 4 3 32 32 H 1.08003 * 120.02088 * 180.27095 * 7 6 4 33 33 H 1.08003 * 126.47010 * 359.97438 * 10 9 8 34 34 H 0.96695 * 114.00078 * 270.17823 * 12 11 10 35 35 H 0.97000 * 120.00047 * 359.72658 * 16 14 13 36 36 H 1.08997 * 109.46882 * 299.72605 * 17 16 14 37 37 H 1.09000 * 109.47271 * 59.72705 * 17 16 14 38 38 H 0.97001 * 119.99464 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1958 0.0000 4 6 3.5829 1.1962 -0.0005 5 9 4.2571 2.3669 0.0000 6 6 4.2777 -0.0021 -0.0016 7 6 3.5904 -1.1996 0.0040 8 6 2.2016 -1.2022 -0.0005 9 7 1.5022 -2.4166 -0.0002 10 6 1.7660 -3.4681 -0.8230 11 6 0.8814 -4.4497 -0.5112 12 8 0.7836 -5.6819 -1.0802 13 6 0.0785 -3.9187 0.5302 14 6 -1.0352 -4.6027 1.2133 15 8 -1.3438 -5.7337 0.8902 16 7 -1.7108 -3.9744 2.1957 17 6 -2.8168 -4.6541 2.8747 18 6 -3.3949 -3.7442 3.9278 19 1 -2.9802 -2.7581 4.0762 20 6 -4.4538 -4.1703 4.7011 21 7 -4.9591 -5.3709 4.5201 22 14 -5.1708 -3.0422 6.0061 23 1 -5.6717 -1.7997 5.3653 24 1 -6.2918 -3.7312 6.6944 25 1 -4.1186 -2.6991 6.9961 26 7 0.5193 -2.6991 0.7771 27 1 -0.3633 -0.0966 1.0231 28 1 -0.3633 0.9345 -0.4279 29 1 -0.3634 -0.8376 -0.5953 30 1 1.6582 2.1311 -0.0004 31 1 5.3576 0.0002 -0.0024 32 1 4.1325 -2.1338 0.0076 33 1 2.5365 -3.5146 -1.5785 34 1 0.1910 -5.7168 -1.8435 35 1 -1.4620 -3.0738 2.4562 36 1 -3.5894 -4.9058 2.1481 37 1 -2.4491 -5.5662 3.3447 38 1 -5.7044 -5.6705 5.0639 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427623366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:29 Heat of formation + Delta-G solvation = -12.902853 kcal Electronic energy + Delta-G solvation = -25544.788719 eV Core-core repulsion = 21497.164268 eV Total energy + Delta-G solvation = -4047.624451 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.38898 -42.99778 -39.71263 -38.40834 -37.12282 -34.14777 -33.52516 -33.24085 -32.24062 -30.19073 -29.47000 -27.73988 -27.01772 -24.42864 -23.37847 -22.36328 -21.53856 -21.37237 -19.61764 -18.79939 -17.70384 -17.66075 -17.26654 -16.92423 -16.13373 -15.85089 -15.80005 -15.11163 -14.89201 -14.43163 -14.27468 -14.17009 -14.14321 -13.89831 -13.83265 -13.50515 -13.34473 -12.86589 -12.34009 -12.31026 -11.95066 -11.80937 -11.66257 -11.59596 -10.98997 -10.85742 -10.40185 -10.30689 -9.84278 -9.51047 -9.39461 -9.28813 -9.15220 -8.70943 -8.55035 -7.84789 -6.13840 -4.20449 0.27690 0.59751 1.65672 1.94291 2.10742 2.89250 3.27842 3.32350 3.34053 3.66357 3.86778 3.92599 4.09658 4.15262 4.30661 4.44663 4.50098 4.56673 4.65464 4.93980 5.05756 5.11632 5.22291 5.23429 5.35792 5.43124 5.50122 5.53924 5.65661 5.80823 5.90686 6.15287 6.15747 6.70225 7.31486 7.41930 7.53523 7.64147 7.69544 7.79968 7.99264 8.64890 8.79394 9.08164 9.45596 10.96423 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012786 B = 0.003275 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.442526 B = 8547.345388 C =10405.462325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.027 4.027 3 C -0.143 4.143 4 C 0.114 3.886 5 F -0.133 7.133 6 C -0.146 4.146 7 C -0.076 4.076 8 C 0.118 3.882 9 N -0.237 5.237 10 C -0.044 4.044 11 C 0.053 3.947 12 O -0.452 6.452 13 C -0.011 4.011 14 C 0.581 3.419 15 O -0.537 6.537 16 N -0.694 5.694 17 C 0.249 3.751 18 C -0.543 4.543 19 H 0.063 0.937 20 C 0.064 3.936 21 N -0.886 5.886 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 N -0.241 5.241 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.187 0.813 34 H 0.389 0.611 35 H 0.396 0.604 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.226 13.369 -13.638 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.029 4.029 3 C -0.163 4.163 4 C 0.094 3.906 5 F -0.112 7.112 6 C -0.166 4.166 7 C -0.096 4.096 8 C 0.028 3.972 9 N -0.021 5.021 10 C -0.184 4.184 11 C -0.003 4.003 12 O -0.257 6.257 13 C -0.174 4.174 14 C 0.363 3.637 15 O -0.413 6.413 16 N -0.342 5.342 17 C 0.129 3.871 18 C -0.581 4.581 19 H 0.081 0.919 20 C -0.139 4.139 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 N -0.074 5.074 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.166 0.834 31 H 0.165 0.835 32 H 0.162 0.838 33 H 0.204 0.796 34 H 0.243 0.757 35 H 0.230 0.770 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 18.066 13.219 -12.669 25.722 hybrid contribution -0.220 0.578 -0.016 0.618 sum 17.846 13.796 -12.685 25.879 Atomic orbital electron populations 1.20890 0.88734 1.03187 1.04568 1.19738 0.97596 0.90157 0.95435 1.20970 0.92151 0.99006 1.04126 1.17758 0.90083 0.81464 1.01279 1.91535 1.80232 1.45817 1.93600 1.20960 1.01283 0.90169 1.04144 1.20905 0.91339 0.99199 0.98194 1.17318 0.90237 0.82278 1.07379 1.42049 1.23683 1.10584 1.25769 1.22919 1.06037 0.88299 1.01132 1.18121 0.97323 0.87239 0.97607 1.84899 1.68470 1.23142 1.49185 1.23072 1.01080 0.91641 1.01574 1.16828 0.80744 0.85395 0.80742 1.90794 1.67265 1.17589 1.65621 1.46379 1.34200 1.18863 1.34801 1.19181 0.83054 0.93228 0.91647 1.21184 1.16885 1.01288 1.18757 0.91870 1.24936 0.96317 0.95319 0.97369 1.69967 1.24836 1.17579 1.39941 0.86469 0.78644 0.80446 0.81320 1.20056 1.21078 1.20060 1.73838 1.02334 1.16178 1.15098 0.88850 0.90813 0.90913 0.83429 0.83492 0.83751 0.79614 0.75653 0.77019 0.95206 0.95212 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 8.81 36.01 0.32 -0.81 16 2 C -0.03 -0.26 5.89 -104.44 -0.62 -0.87 16 3 C -0.14 -1.12 9.65 -39.54 -0.38 -1.50 16 4 C 0.11 0.89 7.30 -39.39 -0.29 0.60 16 5 F -0.13 -1.12 17.27 2.25 0.04 -1.08 16 6 C -0.15 -0.98 10.02 -39.54 -0.40 -1.38 16 7 C -0.08 -0.58 9.61 -39.40 -0.38 -0.96 16 8 C 0.12 1.18 6.13 -83.60 -0.51 0.67 16 9 N -0.24 -2.92 2.94 -10.39 -0.03 -2.95 16 10 C -0.04 -0.50 11.11 -16.54 -0.18 -0.68 16 11 C 0.05 0.79 7.35 -39.10 -0.29 0.50 16 12 O -0.45 -6.54 13.20 -22.25 -0.29 -6.84 16 13 C -0.01 -0.19 7.13 -82.66 -0.59 -0.78 16 14 C 0.58 12.75 7.82 -12.50 -0.10 12.65 16 15 O -0.54 -13.47 16.53 3.01 0.05 -13.42 16 16 N -0.69 -15.70 5.54 -62.55 -0.35 -16.05 16 17 C 0.25 6.75 5.43 -5.19 -0.03 6.72 16 18 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 19 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 20 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 21 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 22 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 N -0.24 -3.71 9.85 33.46 0.33 -3.38 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.54 8.05 -51.92 -0.42 0.12 16 29 H 0.07 0.81 7.20 -51.93 -0.37 0.44 16 30 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 32 H 0.14 0.86 8.01 -52.48 -0.42 0.44 16 33 H 0.19 1.37 8.06 -52.48 -0.42 0.94 16 34 H 0.39 3.88 9.06 45.56 0.41 4.29 16 35 H 0.40 8.11 8.04 -40.82 -0.33 7.78 16 36 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 345.32 15.07 5.20 5.20 Total: -1.00 -34.46 345.32 -6.39 -40.85 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -3.20 Total: 6.58 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -3.86 Total: 0.58 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.69 Total: -47.87 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.24 Total: -20.26 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.46 -6.39 -40.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427623366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.943 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds