Wall clock time and date at job start Tue Mar 31 2020 12:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38114 * 120.02731 * 2 1 4 4 C 1.38470 * 120.04466 * 180.02562 * 3 2 1 5 5 F 1.35098 * 119.95828 * 180.02562 * 4 3 2 6 6 C 1.38519 * 120.08918 * 0.02562 * 4 3 2 7 7 C 1.38072 * 120.03978 * 359.70449 * 6 4 3 8 8 C 1.38841 * 120.01849 * 180.02562 * 2 1 3 9 9 N 1.40141 * 120.04435 * 359.95886 * 8 2 1 10 10 C 1.36098 * 124.93406 * 132.50296 * 9 8 2 11 11 C 1.35771 * 107.06232 * 179.72427 * 10 9 8 12 12 O 1.36080 * 127.26281 * 180.23531 * 11 10 9 13 13 C 1.41816 * 105.47941 * 0.38550 * 11 10 9 14 14 C 1.47468 * 126.44892 * 179.87473 * 13 11 10 15 15 O 1.21607 * 119.99470 * 359.71232 * 14 13 11 16 16 N 1.34770 * 120.00260 * 179.70912 * 14 13 11 17 17 C 1.46499 * 120.00107 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47290 * 179.72286 * 17 16 14 19 19 H 1.08000 * 119.99775 * 0.02562 * 18 17 16 20 20 C 1.37873 * 119.99938 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99962 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99878 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46886 * 60.00490 * 22 20 18 24 24 H 1.48497 * 109.47231 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47320 * 300.00835 * 22 20 18 26 26 N 1.28458 * 124.93112 * 312.48130 * 9 8 2 27 27 H 1.09000 * 109.47093 * 264.60666 * 1 2 3 28 28 H 1.09009 * 109.46517 * 24.60033 * 1 2 3 29 29 H 1.08994 * 109.47680 * 144.59857 * 1 2 3 30 30 H 1.07998 * 119.97249 * 359.97438 * 3 2 1 31 31 H 1.07989 * 119.98145 * 179.97438 * 6 4 3 32 32 H 1.08003 * 120.02088 * 180.27095 * 7 6 4 33 33 H 1.08003 * 126.47010 * 359.97438 * 10 9 8 34 34 H 0.96695 * 114.00078 * 270.17823 * 12 11 10 35 35 H 0.97000 * 120.00047 * 359.72658 * 16 14 13 36 36 H 1.08997 * 109.46882 * 299.72605 * 17 16 14 37 37 H 1.09000 * 109.47271 * 59.72705 * 17 16 14 38 38 H 0.97001 * 119.99464 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1958 0.0000 4 6 3.5829 1.1962 -0.0005 5 9 4.2571 2.3669 0.0000 6 6 4.2777 -0.0021 -0.0016 7 6 3.5904 -1.1996 0.0040 8 6 2.2016 -1.2022 -0.0005 9 7 1.5022 -2.4166 -0.0002 10 6 1.7660 -3.4681 -0.8230 11 6 0.8814 -4.4497 -0.5112 12 8 0.7836 -5.6819 -1.0802 13 6 0.0785 -3.9187 0.5302 14 6 -1.0352 -4.6027 1.2133 15 8 -1.3438 -5.7337 0.8902 16 7 -1.7108 -3.9744 2.1957 17 6 -2.8168 -4.6541 2.8747 18 6 -3.3949 -3.7442 3.9278 19 1 -2.9802 -2.7581 4.0762 20 6 -4.4538 -4.1703 4.7011 21 7 -4.9591 -5.3709 4.5201 22 14 -5.1708 -3.0422 6.0061 23 1 -5.6717 -1.7997 5.3653 24 1 -6.2918 -3.7312 6.6944 25 1 -4.1186 -2.6991 6.9961 26 7 0.5193 -2.6991 0.7771 27 1 -0.3633 -0.0966 1.0231 28 1 -0.3633 0.9345 -0.4279 29 1 -0.3634 -0.8376 -0.5953 30 1 1.6582 2.1311 -0.0004 31 1 5.3576 0.0002 -0.0024 32 1 4.1325 -2.1338 0.0076 33 1 2.5365 -3.5146 -1.5785 34 1 0.1910 -5.7168 -1.8435 35 1 -1.4620 -3.0738 2.4562 36 1 -3.5894 -4.9058 2.1481 37 1 -2.4491 -5.5662 3.3447 38 1 -5.7044 -5.6705 5.0639 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427623366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:28 Heat of formation + Delta-G solvation = -38.155934 kcal Electronic energy + Delta-G solvation = -25545.883775 eV Core-core repulsion = 21497.164268 eV Total energy + Delta-G solvation = -4048.719507 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.01013 -44.06568 -40.61391 -39.99959 -38.21231 -36.17028 -34.58717 -34.17027 -33.93021 -31.24149 -30.48424 -29.31782 -28.12788 -25.82822 -24.48120 -23.72794 -22.61966 -22.31708 -21.24174 -19.85934 -19.04297 -18.47794 -18.28730 -17.77436 -17.69258 -17.03033 -16.93624 -16.67425 -16.15254 -15.91556 -15.61171 -15.31324 -15.20021 -14.71404 -14.60316 -14.46109 -14.36096 -14.05005 -13.99302 -13.90674 -13.11919 -13.03360 -12.96732 -12.69325 -12.68475 -12.25508 -12.21894 -11.59163 -11.52493 -11.08905 -10.82737 -10.79671 -10.17834 -10.07767 -9.91207 -9.42310 -8.29501 -6.46416 -0.44768 0.01861 0.46649 0.86610 1.16643 1.42596 1.47170 1.55399 2.22366 2.26056 2.32138 2.47805 3.05041 3.05898 3.13314 3.48848 3.53187 3.63452 3.83224 3.96279 4.00570 4.13407 4.36227 4.45294 4.56853 4.64829 4.68587 4.87886 4.94191 4.97722 5.08139 5.15783 5.18076 5.21187 5.42172 5.50402 5.62608 5.81617 5.84860 6.53753 6.62170 6.76831 6.87217 7.19038 7.34542 8.82620 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012786 B = 0.003275 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.442526 B = 8547.345388 C =10405.462325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.036 4.036 3 C -0.142 4.142 4 C 0.112 3.888 5 F -0.136 7.136 6 C -0.135 4.135 7 C -0.065 4.065 8 C 0.087 3.913 9 N -0.221 5.221 10 C -0.011 4.011 11 C 0.034 3.966 12 O -0.466 6.466 13 C -0.050 4.050 14 C 0.582 3.418 15 O -0.578 6.578 16 N -0.693 5.693 17 C 0.267 3.733 18 C -0.559 4.559 19 H 0.080 0.920 20 C 0.007 3.993 21 N -0.929 5.929 22 Si 0.985 3.015 23 H -0.261 1.261 24 H -0.282 1.282 25 H -0.264 1.264 26 N -0.245 5.245 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.164 0.836 31 H 0.176 0.824 32 H 0.167 0.833 33 H 0.236 0.764 34 H 0.404 0.596 35 H 0.407 0.593 36 H -0.004 1.004 37 H -0.008 1.008 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.756 16.272 -14.008 29.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.037 4.037 3 C -0.161 4.161 4 C 0.092 3.908 5 F -0.115 7.115 6 C -0.155 4.155 7 C -0.085 4.085 8 C -0.002 4.002 9 N -0.005 5.005 10 C -0.152 4.152 11 C -0.022 4.022 12 O -0.274 6.274 13 C -0.210 4.210 14 C 0.367 3.633 15 O -0.457 6.457 16 N -0.342 5.342 17 C 0.145 3.855 18 C -0.597 4.597 19 H 0.098 0.902 20 C -0.193 4.193 21 N -0.567 5.567 22 Si 0.808 3.192 23 H -0.186 1.186 24 H -0.208 1.208 25 H -0.188 1.188 26 N -0.081 5.081 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.181 0.819 31 H 0.193 0.807 32 H 0.184 0.816 33 H 0.252 0.748 34 H 0.262 0.738 35 H 0.243 0.757 36 H 0.014 0.986 37 H 0.010 0.990 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 20.619 16.156 -13.060 29.270 hybrid contribution -0.853 -0.216 -0.005 0.880 sum 19.766 15.940 -13.065 28.557 Atomic orbital electron populations 1.20841 0.89472 1.03528 1.03428 1.19737 0.97245 0.90631 0.96132 1.21098 0.92455 0.99065 1.03448 1.17936 0.90145 0.81792 1.00886 1.91538 1.80231 1.46114 1.93568 1.21257 1.02638 0.89188 1.02370 1.21120 0.90073 1.00517 0.96808 1.17692 0.91253 0.81319 1.09928 1.42340 1.22296 1.11481 1.24420 1.23481 1.05067 0.86215 1.00388 1.18301 0.98044 0.88184 0.97652 1.84844 1.68978 1.23492 1.50099 1.22416 1.01582 0.93238 1.03803 1.17353 0.81117 0.84970 0.79886 1.90745 1.68740 1.19512 1.66712 1.46118 1.33613 1.19198 1.35257 1.18648 0.83349 0.92513 0.90985 1.21537 1.17361 1.01920 1.18885 0.90201 1.26044 0.96505 0.96944 0.99809 1.70127 1.25458 1.19835 1.41266 0.85202 0.77818 0.78240 0.77932 1.18556 1.20761 1.18833 1.73758 1.03412 1.15022 1.15908 0.90365 0.88669 0.92857 0.81864 0.80701 0.81590 0.74800 0.73848 0.75722 0.98634 0.99024 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 8.81 71.24 0.63 -1.51 16 2 C -0.04 -0.59 5.89 -19.75 -0.12 -0.71 16 3 C -0.14 -1.82 9.65 22.30 0.22 -1.61 16 4 C 0.11 1.37 7.30 22.39 0.16 1.53 16 5 F -0.14 -1.86 17.27 44.97 0.78 -1.09 16 6 C -0.14 -1.24 10.02 22.30 0.22 -1.02 16 7 C -0.07 -0.73 9.61 22.38 0.22 -0.52 16 8 C 0.09 1.51 6.13 38.11 0.23 1.74 16 9 N -0.22 -5.03 2.94 -186.79 -0.55 -5.58 16 10 C -0.01 -0.22 11.11 83.46 0.93 0.71 16 11 C 0.03 0.99 7.35 22.58 0.17 1.16 16 12 O -0.47 -13.50 13.20 -92.30 -1.22 -14.72 16 13 C -0.05 -1.82 7.13 42.44 0.30 -1.52 16 14 C 0.58 27.06 7.82 86.68 0.68 27.74 16 15 O -0.58 -31.04 16.53 -1.89 -0.03 -31.07 16 16 N -0.69 -33.17 5.54 -470.07 -2.61 -35.77 16 17 C 0.27 15.42 5.43 85.63 0.46 15.89 16 18 C -0.56 -31.68 9.28 25.60 0.24 -31.45 16 19 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 20 C 0.01 0.39 5.46 84.65 0.46 0.85 16 21 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 22 Si 0.99 43.17 29.54 68.60 2.03 45.19 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 25 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 26 N -0.25 -7.52 9.85 -48.05 -0.47 -7.99 16 27 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.09 1.26 8.05 -2.38 -0.02 1.24 16 29 H 0.05 1.18 7.20 -2.39 -0.02 1.16 16 30 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 31 H 0.18 0.65 8.06 -2.92 -0.02 0.63 16 32 H 0.17 1.15 8.01 -2.91 -0.02 1.12 16 33 H 0.24 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.40 8.15 9.06 -74.06 -0.67 7.48 16 35 H 0.41 17.39 8.04 -92.71 -0.75 16.64 16 36 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.54 16 38 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -79.28 345.32 2.73 -76.55 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -0.28 Total: 19.72 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 4.80 Total: 11.29 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -3.34 Total: -105.88 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -1.25 Total: -45.79 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.78 Total: -1.09 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -79.28 2.73 -76.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427623366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.393 kcal (2) G-P(sol) polarization free energy of solvation -79.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds