Wall clock time and date at job start Tue Mar 31 2020 12:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37035 * 127.91819 * 2 1 4 4 C 1.47721 * 126.35233 * 0.03304 * 3 2 1 5 5 C 1.39629 * 120.16592 * 312.99620 * 4 3 2 6 6 C 1.37891 * 119.87614 * 180.02562 * 5 4 3 7 7 C 1.38435 * 120.21040 * 359.97438 * 6 5 4 8 8 C 1.38246 * 120.33222 * 359.75149 * 7 6 5 9 9 C 1.38268 * 120.11732 * 0.50031 * 8 7 6 10 10 F 1.35101 * 120.10496 * 179.77389 * 9 8 7 11 11 O 1.34086 * 107.28688 * 179.77326 * 3 2 1 12 12 N 1.20952 * 112.03335 * 0.22181 * 11 3 2 13 13 H 0.97000 * 124.64322 * 180.02562 * 12 11 3 14 14 C 1.35994 * 110.71860 * 0.02562 * 12 11 3 15 15 N 1.33899 * 127.09922 * 179.97438 * 14 12 11 16 16 C 1.33363 * 120.00116 * 359.97438 * 15 14 12 17 17 O 1.21913 * 120.00039 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99987 * 179.97438 * 16 15 14 19 19 C 1.46500 * 120.00041 * 179.97438 * 18 16 15 20 20 C 1.50703 * 109.46905 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00216 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99725 * 180.02562 * 20 19 18 23 23 N 1.31510 * 119.99875 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00151 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47233 * 89.99679 * 24 22 20 26 26 H 1.48499 * 109.47001 * 210.00508 * 24 22 20 27 27 H 1.48507 * 109.46926 * 330.00217 * 24 22 20 28 28 H 1.08999 * 109.47280 * 84.86059 * 1 2 3 29 29 H 1.09003 * 109.47232 * 204.85945 * 1 2 3 30 30 H 1.08999 * 109.47058 * 324.85876 * 1 2 3 31 31 H 1.07995 * 120.05902 * 0.02562 * 5 4 3 32 32 H 1.07994 * 119.89353 * 179.97438 * 6 5 4 33 33 H 1.07997 * 119.83190 * 179.97438 * 7 6 5 34 34 H 1.07998 * 119.94116 * 180.27539 * 8 7 6 35 35 H 0.97006 * 119.99868 * 0.02562 * 18 16 15 36 36 H 1.08998 * 109.46956 * 299.99979 * 19 18 16 37 37 H 1.08999 * 109.47106 * 60.00276 * 19 18 16 38 38 H 0.97003 * 120.00159 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3491 1.0811 0.0000 4 6 1.9487 2.5029 0.0007 5 6 0.9656 2.9554 -0.8816 6 6 0.5968 4.2841 -0.8763 7 6 1.1976 5.1703 0.0013 8 6 2.1678 4.7305 0.8825 9 6 2.5518 3.4022 0.8852 10 9 3.5032 2.9736 1.7433 11 8 3.6040 0.6086 0.0051 12 7 3.6336 -0.6006 0.0038 13 1 4.4449 -1.1323 0.0071 14 6 2.3738 -1.1127 -0.0031 15 7 2.0277 -2.4061 -0.0068 16 6 2.9711 -3.3488 -0.0044 17 8 4.1485 -3.0329 0.0008 18 7 2.6227 -4.6508 -0.0076 19 6 3.6590 -5.6863 -0.0055 20 6 3.0100 -7.0464 -0.0105 21 1 1.9333 -7.1310 -0.0145 22 6 3.7908 -8.1828 -0.0090 23 7 3.2244 -9.3697 -0.0129 24 14 5.6530 -8.0366 -0.0015 25 1 6.1410 -7.9997 1.4005 26 1 6.2442 -9.2055 -0.7010 27 1 6.0543 -6.7880 -0.6982 28 1 -0.3634 0.0921 -1.0235 29 1 -0.3634 -0.9325 0.4320 30 1 -0.3633 0.8404 0.5915 31 1 0.4951 2.2661 -1.5670 32 1 -0.1632 4.6345 -1.5589 33 1 0.9043 6.2096 0.0000 34 1 2.6292 5.4264 1.5675 35 1 1.6858 -4.9021 -0.0121 36 1 4.2824 -5.5783 -0.8931 37 1 4.2760 -5.5811 0.8869 38 1 3.7737 -10.1692 -0.0123 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433908467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:16 Heat of formation + Delta-G solvation = 48.083543 kcal Electronic energy + Delta-G solvation = -25415.359737 eV Core-core repulsion = 21370.379854 eV Total energy + Delta-G solvation = -4044.979883 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.44641 -45.24369 -39.59997 -39.13429 -35.77896 -34.75477 -33.81229 -32.28163 -31.38696 -31.37633 -30.73477 -28.37774 -27.56754 -24.70794 -23.48362 -22.78272 -21.94689 -21.29600 -20.26197 -18.70117 -18.31591 -18.08553 -17.40234 -16.78104 -16.68721 -16.16109 -15.93841 -15.50242 -15.06582 -14.66849 -14.61092 -14.39904 -14.14265 -13.82951 -13.42415 -13.33057 -13.09919 -12.94762 -12.58899 -12.40574 -12.26852 -12.19851 -11.69633 -11.33596 -11.05782 -10.71903 -10.56854 -10.41969 -9.87471 -9.56019 -9.39764 -9.21145 -8.86186 -8.70162 -8.25270 -7.55945 -6.13362 -4.14300 -0.02730 0.53493 0.95066 1.93338 2.06383 2.90253 3.14940 3.31721 3.37711 3.46986 3.52574 3.77623 4.07527 4.16049 4.35981 4.36677 4.40327 4.43495 4.55838 4.62590 4.88142 5.09021 5.21765 5.29472 5.36287 5.39714 5.49218 5.56430 5.63660 5.70618 5.91023 6.13465 6.14510 6.49440 6.95196 7.18396 7.41807 7.52866 7.81952 7.85571 8.30652 8.75067 8.87991 9.38818 9.52972 10.98800 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.034468 B = 0.002429 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.145275 B =11523.638472 C =12092.750393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.177 4.177 3 C 0.093 3.907 4 C -0.064 4.064 5 C -0.051 4.051 6 C -0.129 4.129 7 C -0.071 4.071 8 C -0.155 4.155 9 C 0.131 3.869 10 F -0.126 7.126 11 O 0.004 5.996 12 N -0.517 5.517 13 H 0.478 0.522 14 C 0.434 3.566 15 N -0.628 5.628 16 C 0.662 3.338 17 O -0.658 6.658 18 N -0.686 5.686 19 C 0.232 3.768 20 C -0.539 4.539 21 H 0.081 0.919 22 C 0.076 3.924 23 N -0.894 5.894 24 Si 0.878 3.122 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.262 1.262 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.402 0.598 36 H 0.022 0.978 37 H 0.018 0.982 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.234 35.005 -0.965 35.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.183 4.183 3 C 0.034 3.966 4 C -0.066 4.066 5 C -0.069 4.069 6 C -0.147 4.147 7 C -0.089 4.089 8 C -0.174 4.174 9 C 0.111 3.889 10 F -0.104 7.104 11 O -0.006 6.006 12 N -0.197 5.197 13 H 0.344 0.656 14 C 0.177 3.823 15 N -0.392 5.392 16 C 0.361 3.639 17 O -0.544 6.544 18 N -0.334 5.334 19 C 0.109 3.891 20 C -0.577 4.577 21 H 0.099 0.901 22 C -0.127 4.127 23 N -0.531 5.531 24 Si 0.704 3.296 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.186 1.186 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.237 0.763 36 H 0.040 0.960 37 H 0.036 0.964 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.481 34.505 -0.924 35.121 hybrid contribution 1.945 -0.590 0.253 2.048 sum -4.536 33.915 -0.671 34.224 Atomic orbital electron populations 1.20107 0.85714 1.04064 1.02590 1.20247 0.98119 0.87885 1.12053 1.21085 0.81411 0.93534 1.00522 1.17613 1.01329 0.86801 1.00835 1.21171 0.93827 0.96385 0.95517 1.21198 1.00994 0.92547 0.99986 1.21268 0.93827 1.00560 0.93221 1.21164 1.00411 0.93635 1.02185 1.17839 0.88530 0.92615 0.89873 1.91579 1.61071 1.90329 1.67430 1.84049 1.27981 1.08914 1.79657 1.44588 1.13024 0.93659 1.68437 0.65604 1.21001 0.81063 0.92947 0.87261 1.69531 1.33673 0.94444 1.41507 1.17129 0.84327 0.84591 0.77823 1.90495 1.21693 1.82105 1.60138 1.45077 1.11513 1.03213 1.73593 1.19411 0.87414 0.85777 0.96462 1.21125 0.95706 0.88137 1.52759 0.90092 1.24786 0.98919 0.94953 0.94042 1.69885 1.35912 0.97511 1.49807 0.86807 0.85570 0.78269 0.78951 1.19922 1.20935 1.18611 0.90628 0.89318 0.91164 0.83663 0.84126 0.84267 0.83846 0.76342 0.95981 0.96440 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 9.40 36.01 0.34 -0.25 16 2 C -0.18 -2.14 6.30 -104.00 -0.66 -2.79 16 3 C 0.09 1.02 6.51 -36.15 -0.24 0.78 16 4 C -0.06 -0.51 5.72 -104.91 -0.60 -1.11 16 5 C -0.05 -0.26 9.15 -39.19 -0.36 -0.62 16 6 C -0.13 -0.41 10.03 -39.64 -0.40 -0.81 16 7 C -0.07 -0.22 10.04 -39.51 -0.40 -0.62 16 8 C -0.16 -0.78 10.01 -39.57 -0.40 -1.17 16 9 C 0.13 1.04 7.29 -38.98 -0.28 0.76 16 10 F -0.13 -1.29 16.73 2.25 0.04 -1.25 16 11 O 0.00 0.06 11.06 17.05 0.19 0.25 16 12 N -0.52 -8.05 6.49 31.20 0.20 -7.85 16 13 H 0.48 8.07 6.29 -40.82 -0.26 7.81 16 14 C 0.43 7.16 7.76 -155.84 -1.21 5.95 16 15 N -0.63 -12.41 10.61 -16.06 -0.17 -12.58 16 16 C 0.66 15.42 8.46 -88.18 -0.75 14.67 16 17 O -0.66 -16.18 13.76 5.00 0.07 -16.11 16 18 N -0.69 -16.60 5.55 -66.72 -0.37 -16.97 16 19 C 0.23 6.28 4.50 -5.19 -0.02 6.26 16 20 C -0.54 -15.83 9.83 -34.44 -0.34 -16.17 16 21 H 0.08 2.48 7.84 -52.49 -0.41 2.06 16 22 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 23 N -0.89 -27.56 13.96 55.43 0.77 -26.79 16 24 Si 0.88 22.45 27.47 -169.99 -4.67 17.78 16 25 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 27 H -0.26 -6.68 6.54 56.52 0.37 -6.31 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.15 0.54 7.72 -52.49 -0.41 0.13 16 32 H 0.14 0.10 8.06 -52.49 -0.42 -0.32 16 33 H 0.14 0.07 8.06 -52.49 -0.42 -0.35 16 34 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 35 H 0.40 9.07 8.42 -40.82 -0.34 8.73 16 36 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 37 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 38 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -36.31 338.79 -8.12 -44.43 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -3.89 Total: 6.93 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: -5.40 Total: 7.06 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: 0.44 Total: -64.19 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.26 Total: -15.86 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.78 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.31 -8.12 -44.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433908467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.518 kcal (2) G-P(sol) polarization free energy of solvation -36.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds