Wall clock time and date at job start Tue Mar 31 2020 12:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37035 * 127.91819 * 2 1 4 4 C 1.47721 * 126.35233 * 0.03304 * 3 2 1 5 5 C 1.39629 * 120.16592 * 312.99620 * 4 3 2 6 6 C 1.37891 * 119.87614 * 180.02562 * 5 4 3 7 7 C 1.38435 * 120.21040 * 359.97438 * 6 5 4 8 8 C 1.38246 * 120.33222 * 359.75149 * 7 6 5 9 9 C 1.38268 * 120.11732 * 0.50031 * 8 7 6 10 10 F 1.35101 * 120.10496 * 179.77389 * 9 8 7 11 11 O 1.34086 * 107.28688 * 179.77326 * 3 2 1 12 12 N 1.20952 * 112.03335 * 0.22181 * 11 3 2 13 13 H 0.97000 * 124.64322 * 180.02562 * 12 11 3 14 14 C 1.35994 * 110.71860 * 0.02562 * 12 11 3 15 15 N 1.33899 * 127.09922 * 179.97438 * 14 12 11 16 16 C 1.33363 * 120.00116 * 359.97438 * 15 14 12 17 17 O 1.21913 * 120.00039 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99987 * 179.97438 * 16 15 14 19 19 C 1.46500 * 120.00041 * 179.97438 * 18 16 15 20 20 C 1.50703 * 109.46905 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00216 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99725 * 180.02562 * 20 19 18 23 23 N 1.31510 * 119.99875 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00151 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47233 * 89.99679 * 24 22 20 26 26 H 1.48499 * 109.47001 * 210.00508 * 24 22 20 27 27 H 1.48507 * 109.46926 * 330.00217 * 24 22 20 28 28 H 1.08999 * 109.47280 * 84.86059 * 1 2 3 29 29 H 1.09003 * 109.47232 * 204.85945 * 1 2 3 30 30 H 1.08999 * 109.47058 * 324.85876 * 1 2 3 31 31 H 1.07995 * 120.05902 * 0.02562 * 5 4 3 32 32 H 1.07994 * 119.89353 * 179.97438 * 6 5 4 33 33 H 1.07997 * 119.83190 * 179.97438 * 7 6 5 34 34 H 1.07998 * 119.94116 * 180.27539 * 8 7 6 35 35 H 0.97006 * 119.99868 * 0.02562 * 18 16 15 36 36 H 1.08998 * 109.46956 * 299.99979 * 19 18 16 37 37 H 1.08999 * 109.47106 * 60.00276 * 19 18 16 38 38 H 0.97003 * 120.00159 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3491 1.0811 0.0000 4 6 1.9487 2.5029 0.0007 5 6 0.9656 2.9554 -0.8816 6 6 0.5968 4.2841 -0.8763 7 6 1.1976 5.1703 0.0013 8 6 2.1678 4.7305 0.8825 9 6 2.5518 3.4022 0.8852 10 9 3.5032 2.9736 1.7433 11 8 3.6040 0.6086 0.0051 12 7 3.6336 -0.6006 0.0038 13 1 4.4449 -1.1323 0.0071 14 6 2.3738 -1.1127 -0.0031 15 7 2.0277 -2.4061 -0.0068 16 6 2.9711 -3.3488 -0.0044 17 8 4.1485 -3.0329 0.0008 18 7 2.6227 -4.6508 -0.0076 19 6 3.6590 -5.6863 -0.0055 20 6 3.0100 -7.0464 -0.0105 21 1 1.9333 -7.1310 -0.0145 22 6 3.7908 -8.1828 -0.0090 23 7 3.2244 -9.3697 -0.0129 24 14 5.6530 -8.0366 -0.0015 25 1 6.1410 -7.9997 1.4005 26 1 6.2442 -9.2055 -0.7010 27 1 6.0543 -6.7880 -0.6982 28 1 -0.3634 0.0921 -1.0235 29 1 -0.3634 -0.9325 0.4320 30 1 -0.3633 0.8404 0.5915 31 1 0.4951 2.2661 -1.5670 32 1 -0.1632 4.6345 -1.5589 33 1 0.9043 6.2096 0.0000 34 1 2.6292 5.4264 1.5675 35 1 1.6858 -4.9021 -0.0121 36 1 4.2824 -5.5783 -0.8931 37 1 4.2760 -5.5811 0.8869 38 1 3.7737 -10.1692 -0.0123 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433908467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:15 Heat of formation + Delta-G solvation = 22.288280 kcal Electronic energy + Delta-G solvation = -25416.478304 eV Core-core repulsion = 21370.379854 eV Total energy + Delta-G solvation = -4046.098449 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.08769 -46.45562 -40.85339 -40.00240 -37.10214 -36.18941 -35.30067 -34.42731 -32.65562 -31.84904 -31.43646 -29.88548 -29.01095 -25.60141 -24.57565 -23.80244 -23.00718 -22.75156 -21.61542 -20.29060 -19.27680 -19.08696 -18.72488 -18.10715 -17.39961 -17.19164 -17.11141 -16.78409 -16.44212 -16.34089 -15.73602 -15.39727 -15.11575 -14.79580 -14.51655 -14.40382 -14.34553 -14.23443 -14.00434 -13.40387 -13.14833 -12.93571 -12.85135 -12.79086 -12.60785 -12.32648 -12.15901 -11.93099 -11.70275 -11.20816 -10.95107 -10.51357 -10.15112 -9.97914 -9.74632 -9.01059 -8.42661 -6.50127 -0.76737 0.08475 0.18264 0.78143 0.94311 1.29985 1.30417 1.44942 2.05645 2.24801 2.27959 2.56571 2.68486 2.92248 3.05165 3.13134 3.42242 3.66559 3.83980 4.04373 4.29526 4.30287 4.35715 4.53814 4.71964 4.79231 4.88717 4.95265 4.97570 4.99642 5.03197 5.11271 5.21789 5.28627 5.37838 5.43073 5.59528 5.80674 6.07772 6.30026 6.49886 6.63016 6.92992 7.13893 7.74345 8.72478 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.034468 B = 0.002429 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.145275 B =11523.638472 C =12092.750393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.183 4.183 3 C 0.115 3.885 4 C -0.091 4.091 5 C -0.047 4.047 6 C -0.118 4.118 7 C -0.055 4.055 8 C -0.156 4.156 9 C 0.103 3.897 10 F -0.149 7.149 11 O 0.006 5.994 12 N -0.516 5.516 13 H 0.473 0.527 14 C 0.416 3.584 15 N -0.649 5.649 16 C 0.657 3.343 17 O -0.684 6.684 18 N -0.696 5.696 19 C 0.250 3.750 20 C -0.549 4.549 21 H 0.056 0.944 22 C 0.026 3.974 23 N -0.929 5.929 24 Si 0.943 3.057 25 H -0.264 1.264 26 H -0.267 1.267 27 H -0.263 1.263 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.161 0.839 32 H 0.176 0.824 33 H 0.175 0.825 34 H 0.158 0.842 35 H 0.407 0.593 36 H 0.010 0.990 37 H 0.008 0.992 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.074 39.119 -1.655 39.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.189 4.189 3 C 0.057 3.943 4 C -0.093 4.093 5 C -0.065 4.065 6 C -0.135 4.135 7 C -0.073 4.073 8 C -0.175 4.175 9 C 0.084 3.916 10 F -0.128 7.128 11 O -0.006 6.006 12 N -0.190 5.190 13 H 0.337 0.663 14 C 0.164 3.836 15 N -0.416 5.416 16 C 0.357 3.643 17 O -0.573 6.573 18 N -0.345 5.345 19 C 0.125 3.875 20 C -0.587 4.587 21 H 0.074 0.926 22 C -0.174 4.174 23 N -0.568 5.568 24 Si 0.766 3.234 25 H -0.189 1.189 26 H -0.192 1.192 27 H -0.188 1.188 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.179 0.821 32 H 0.193 0.807 33 H 0.192 0.808 34 H 0.176 0.824 35 H 0.242 0.758 36 H 0.028 0.972 37 H 0.026 0.974 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.345 38.690 -1.613 39.414 hybrid contribution 2.107 -1.452 0.442 2.597 sum -5.239 37.238 -1.171 37.622 Atomic orbital electron populations 1.20247 0.83067 1.04332 1.04483 1.20627 0.99590 0.86115 1.12617 1.21802 0.79827 0.95072 0.97632 1.17764 1.03489 0.84894 1.03117 1.21457 0.92547 0.97765 0.94715 1.21645 1.00775 0.91390 0.99736 1.21759 0.91892 1.02269 0.91373 1.21449 1.00763 0.92437 1.02836 1.18231 0.89000 0.93978 0.90403 1.91519 1.62189 1.90733 1.68353 1.84078 1.29889 1.07659 1.78950 1.44499 1.12807 0.94660 1.67001 0.66324 1.21630 0.82200 0.93110 0.86645 1.69532 1.32181 0.95072 1.44840 1.17434 0.84630 0.84763 0.77498 1.90468 1.22720 1.82446 1.61623 1.44866 1.11040 1.03404 1.75147 1.19002 0.87664 0.85496 0.95313 1.21259 0.94809 0.89648 1.53016 0.92616 1.25626 1.03924 0.94476 0.93402 1.69983 1.37986 0.98367 1.50440 0.85779 0.79510 0.78562 0.79517 1.18860 1.19175 1.18793 0.88279 0.90976 0.88443 0.82132 0.80690 0.80772 0.82405 0.75844 0.97176 0.97382 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.99 9.40 71.24 0.67 -0.33 16 2 C -0.18 -4.29 6.30 -19.46 -0.12 -4.41 16 3 C 0.12 2.43 6.51 24.50 0.16 2.59 16 4 C -0.09 -1.26 5.72 -20.05 -0.11 -1.37 16 5 C -0.05 -0.29 9.15 22.52 0.21 -0.09 16 6 C -0.12 -0.13 10.03 22.23 0.22 0.09 16 7 C -0.06 -0.07 10.04 22.32 0.22 0.16 16 8 C -0.16 -1.07 10.01 22.28 0.22 -0.85 16 9 C 0.10 1.47 7.29 22.66 0.17 1.64 16 10 F -0.15 -3.05 16.73 44.97 0.75 -2.29 16 11 O 0.01 0.16 11.06 71.16 0.79 0.95 16 12 N -0.52 -16.52 6.49 -55.21 -0.36 -16.88 16 13 H 0.47 16.68 6.29 -92.71 -0.58 16.09 16 14 C 0.42 14.02 7.76 134.08 1.04 15.06 16 15 N -0.65 -26.59 10.61 -323.65 -3.43 -30.02 16 16 C 0.66 31.83 8.46 179.49 1.52 33.35 16 17 O -0.68 -34.91 13.76 -5.03 -0.07 -34.98 16 18 N -0.70 -35.13 5.55 -483.14 -2.68 -37.81 16 19 C 0.25 13.92 4.50 85.63 0.38 14.31 16 20 C -0.55 -33.34 9.83 25.60 0.25 -33.09 16 21 H 0.06 3.57 7.84 -2.91 -0.02 3.55 16 22 C 0.03 1.57 5.47 84.66 0.46 2.03 16 23 N -0.93 -58.20 13.96 21.45 0.30 -57.90 16 24 Si 0.94 46.79 27.47 68.60 1.88 48.67 16 25 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 27 H -0.26 -13.08 6.54 99.48 0.65 -12.43 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.16 0.50 7.72 -2.91 -0.02 0.47 16 32 H 0.18 -0.91 8.06 -2.91 -0.02 -0.93 16 33 H 0.17 -0.93 8.06 -2.91 -0.02 -0.95 16 34 H 0.16 0.56 8.06 -2.91 -0.02 0.53 16 35 H 0.41 19.33 8.42 -92.70 -0.78 18.55 16 36 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 37 H 0.01 0.47 7.57 -2.39 -0.02 0.46 16 38 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -82.66 338.79 2.19 -80.47 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -0.28 Total: 20.70 kcal Atomic # 6 Polarization: 23.80 SS G_CDS: 5.29 Total: 29.10 kcal Atomic # 7 Polarization: -136.43 SS G_CDS: -6.18 Total: -142.61 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: 0.72 Total: -34.03 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.75 Total: -2.29 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.88 Total: 48.67 kcal Total: -82.66 2.19 -80.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433908467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.761 kcal (2) G-P(sol) polarization free energy of solvation -82.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds