Wall clock time and date at job start Tue Mar 31 2020 12:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35017 * 125.52968 * 2 1 4 4 C 1.41142 * 108.24422 * 179.97438 * 3 2 1 5 5 N 1.32982 * 126.38032 * 179.97438 * 4 3 2 6 6 C 1.33844 * 119.99947 * 0.02898 * 5 4 3 7 7 O 1.21903 * 119.99552 * 359.97438 * 6 5 4 8 8 C 1.47761 * 119.99799 * 180.26916 * 6 5 4 9 9 C 1.39645 * 120.15796 * 359.45693 * 8 6 5 10 10 C 1.37734 * 119.94362 * 179.71781 * 9 8 6 11 11 C 1.38802 * 120.25635 * 0.55172 * 10 9 8 12 12 F 1.35104 * 119.84954 * 179.74246 * 11 10 9 13 13 C 1.38356 * 120.31230 * 359.72200 * 11 10 9 14 14 C 1.38579 * 120.05356 * 359.97438 * 13 11 10 15 15 O 1.35687 * 120.13348 * 179.97438 * 14 13 11 16 16 N 1.37431 * 107.24812 * 0.22823 * 4 3 2 17 17 H 0.96996 * 126.36757 * 179.74978 * 16 4 3 18 18 N 1.36413 * 125.52658 * 179.97438 * 2 1 3 19 19 C 1.46494 * 125.85521 * 0.03904 * 18 2 1 20 20 C 1.50703 * 109.47341 * 85.00039 * 19 18 2 21 21 H 1.08004 * 119.99992 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00367 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00033 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00194 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46853 * 60.00284 * 24 22 20 26 26 H 1.48495 * 109.47176 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47258 * 300.00672 * 24 22 20 28 28 H 1.08996 * 109.47775 * 90.02185 * 1 2 3 29 29 H 1.09005 * 109.46933 * 210.02702 * 1 2 3 30 30 H 1.09006 * 109.47163 * 330.02043 * 1 2 3 31 31 H 1.08011 * 125.87978 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.02250 * 359.97438 * 9 8 6 33 33 H 1.08004 * 119.87194 * 180.24884 * 10 9 8 34 34 H 1.08007 * 119.97782 * 180.02562 * 13 11 10 35 35 H 0.96695 * 114.00449 * 270.02468 * 15 14 13 36 36 H 1.09000 * 109.47581 * 204.99619 * 19 18 2 37 37 H 1.09002 * 109.47708 * 325.00087 * 19 18 2 38 38 H 0.96995 * 119.99771 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2916 1.0988 0.0000 4 6 3.6393 0.6794 0.0006 5 7 4.7106 1.4673 0.0003 6 6 4.5629 2.7976 -0.0001 7 8 3.4463 3.2868 -0.0006 8 6 5.7532 3.6730 -0.0064 9 6 7.0338 3.1160 -0.0006 10 6 8.1403 3.9362 -0.0124 11 6 7.9882 5.3158 -0.0186 12 9 9.0793 6.1126 -0.0249 13 6 6.7245 5.8790 -0.0187 14 6 5.6023 5.0660 -0.0132 15 8 4.3622 5.6167 -0.0127 16 7 3.6384 -0.6949 -0.0043 17 1 4.4191 -1.2705 -0.0085 18 7 2.2997 -1.1102 0.0005 19 6 1.8320 -2.4985 0.0003 20 6 1.5550 -2.9351 -1.4152 21 1 1.7121 -2.2474 -2.2330 22 6 1.1021 -4.2129 -1.6665 23 7 0.9112 -5.0506 -0.6707 24 14 0.7581 -4.7538 -3.4211 25 1 2.0031 -4.6502 -4.2240 26 1 0.2842 -6.1611 -3.4213 27 1 -0.2866 -3.8800 -4.0127 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3634 0.8902 0.5135 31 1 1.9473 2.1225 -0.0004 32 1 7.1563 2.0430 0.0090 33 1 9.1301 3.5041 -0.0119 34 1 6.6124 6.9533 -0.0239 35 1 4.0046 5.7801 0.8707 36 1 2.5983 -3.1402 0.4350 37 1 0.9179 -2.5741 0.5892 38 1 0.5922 -5.9493 -0.8475 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436664908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:37 Heat of formation + Delta-G solvation = 1.091674 kcal Electronic energy + Delta-G solvation = -25323.242821 eV Core-core repulsion = 21276.225218 eV Total energy + Delta-G solvation = -4047.017603 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.04938 -40.99849 -39.85937 -37.82621 -36.46583 -34.38638 -33.19145 -32.30437 -31.28889 -30.38518 -29.79372 -27.59766 -26.81765 -24.11246 -23.07880 -22.79990 -21.51558 -19.81153 -19.45053 -18.57407 -17.28370 -16.98338 -16.74119 -16.49541 -16.01332 -15.70550 -15.24246 -15.03453 -14.97801 -14.64588 -14.16876 -13.90123 -13.68475 -13.65051 -13.16021 -12.88150 -12.73521 -12.71308 -12.53075 -12.06428 -11.87328 -11.80745 -11.53904 -11.37204 -11.07279 -10.71470 -10.56240 -10.42708 -9.52358 -9.47659 -9.01085 -8.95800 -8.93170 -8.62722 -8.41227 -7.01849 -6.54299 -4.70101 0.70967 1.12359 1.68395 1.97872 2.87860 3.04391 3.10374 3.13575 3.41963 3.90048 4.00259 4.11041 4.41016 4.58999 4.67136 4.76004 4.77542 4.89368 4.96059 5.28373 5.48209 5.62779 5.72627 5.80504 5.81098 5.90382 6.06523 6.08214 6.17870 6.28862 6.43713 6.53143 6.57516 6.69041 6.72902 7.33029 7.41819 7.46873 7.58542 7.71896 7.88958 8.21606 8.38682 9.00676 9.26111 10.48424 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023952 B = 0.002558 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.738941 B =10943.661212 C =11512.677837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.191 3.809 3 C -0.333 4.333 4 C 0.472 3.528 5 N -0.697 5.697 6 C 0.531 3.469 7 O -0.563 6.563 8 C -0.134 4.134 9 C -0.020 4.020 10 C -0.182 4.182 11 C 0.125 3.875 12 F -0.139 7.139 13 C -0.202 4.202 14 C 0.182 3.818 15 O -0.473 6.473 16 N -0.466 5.466 17 H 0.445 0.555 18 N -0.338 5.338 19 C 0.254 3.746 20 C -0.557 4.557 21 H 0.069 0.931 22 C 0.072 3.928 23 N -0.886 5.886 24 Si 0.909 3.091 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.271 1.271 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.184 0.816 32 H 0.153 0.847 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.395 0.605 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.250 12.165 4.286 14.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 C -0.365 4.365 4 C 0.223 3.777 5 N -0.461 5.461 6 C 0.318 3.682 7 O -0.445 6.445 8 C -0.138 4.138 9 C -0.039 4.039 10 C -0.201 4.201 11 C 0.106 3.894 12 F -0.118 7.118 13 C -0.221 4.221 14 C 0.135 3.865 15 O -0.283 6.283 16 N -0.188 5.188 17 H 0.293 0.707 18 N -0.124 5.124 19 C 0.137 3.863 20 C -0.596 4.596 21 H 0.087 0.913 22 C -0.134 4.134 23 N -0.523 5.523 24 Si 0.735 3.265 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.196 1.196 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.201 0.799 32 H 0.171 0.829 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.253 0.747 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.493 11.558 3.747 13.776 hybrid contribution -0.046 -0.350 -0.508 0.619 sum 6.447 11.208 3.239 13.329 Atomic orbital electron populations 1.20609 0.86276 1.03924 1.04376 1.21360 0.94553 0.85570 0.92145 1.22257 0.91143 1.00337 1.22744 1.19065 0.91599 0.82081 0.84953 1.68723 1.28181 1.04879 1.44360 1.18545 0.86710 0.85863 0.77125 1.90636 1.26143 1.79011 1.48664 1.20444 0.94970 0.92633 1.05774 1.21309 0.89771 1.01216 0.91616 1.21163 1.00789 0.91295 1.06824 1.17637 0.82464 0.88392 1.00952 1.91498 1.52765 1.73810 1.93719 1.21264 0.90671 1.01373 1.08798 1.18219 0.84758 0.89112 0.94405 1.84746 1.27945 1.82322 1.33322 1.44535 0.98923 1.05172 1.70155 0.70722 1.47972 0.92730 1.08282 1.63409 1.20055 0.96512 0.70093 0.99593 1.21328 1.47894 0.98770 0.91561 0.91319 1.24939 0.94197 0.95761 0.98480 1.69883 1.43865 1.07002 1.31534 0.86354 0.79178 0.77856 0.83064 1.19829 1.20769 1.19634 0.89067 0.90059 0.89485 0.79910 0.82909 0.84395 0.84092 0.74722 0.93059 0.91386 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.27 10.09 36.01 0.36 -0.90 16 2 C 0.19 3.28 6.93 -81.70 -0.57 2.71 16 3 C -0.33 -6.17 9.41 -39.62 -0.37 -6.54 16 4 C 0.47 8.95 8.07 -155.26 -1.25 7.70 16 5 N -0.70 -13.22 9.66 -12.25 -0.12 -13.34 16 6 C 0.53 10.13 7.68 -12.78 -0.10 10.04 16 7 O -0.56 -11.60 12.08 -16.88 -0.20 -11.80 16 8 C -0.13 -2.14 5.89 -104.78 -0.62 -2.75 16 9 C -0.02 -0.27 9.58 -39.24 -0.38 -0.65 16 10 C -0.18 -2.09 10.00 -39.56 -0.40 -2.49 16 11 C 0.13 1.50 7.30 -39.33 -0.29 1.22 16 12 F -0.14 -1.65 17.26 2.25 0.04 -1.61 16 13 C -0.20 -2.45 9.95 -39.41 -0.39 -2.85 16 14 C 0.18 2.60 6.71 -38.75 -0.26 2.34 16 15 O -0.47 -6.73 11.57 -40.65 -0.47 -7.20 16 16 N -0.47 -8.16 7.38 31.33 0.23 -7.93 16 17 H 0.45 6.76 8.96 -182.55 -1.64 5.12 16 18 N -0.34 -6.22 3.63 -58.04 -0.21 -6.43 16 19 C 0.25 5.18 5.93 -5.20 -0.03 5.15 16 20 C -0.56 -12.95 9.39 -34.44 -0.32 -13.27 16 21 H 0.07 1.66 7.81 -52.48 -0.41 1.25 16 22 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -22.02 13.29 55.43 0.74 -21.28 16 24 Si 0.91 18.93 29.54 -169.99 -5.02 13.91 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 27 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 28 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.08 1.08 7.14 -51.93 -0.37 0.71 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.18 3.52 5.77 -52.48 -0.30 3.22 16 32 H 0.15 1.97 7.54 -52.49 -0.40 1.57 16 33 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.14 1.44 8.06 -52.48 -0.42 1.01 16 35 H 0.39 3.97 9.06 45.56 0.41 4.38 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.40 7.18 -51.93 -0.37 1.02 16 38 H 0.27 6.48 8.31 -40.82 -0.34 6.15 16 LS Contribution 340.44 15.07 5.13 5.13 Total: -1.00 -29.08 340.44 -8.92 -38.00 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -4.32 Total: 11.24 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -4.71 Total: 1.31 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.64 Total: -48.98 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.67 Total: -19.00 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.08 -8.92 -38.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436664908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.088 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds