Wall clock time and date at job start Tue Mar 31 2020 12:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35017 * 125.52968 * 2 1 4 4 C 1.41142 * 108.24422 * 179.97438 * 3 2 1 5 5 N 1.32982 * 126.38032 * 179.97438 * 4 3 2 6 6 C 1.33844 * 119.99947 * 0.02898 * 5 4 3 7 7 O 1.21903 * 119.99552 * 359.97438 * 6 5 4 8 8 C 1.47761 * 119.99799 * 180.26916 * 6 5 4 9 9 C 1.39645 * 120.15796 * 359.45693 * 8 6 5 10 10 C 1.37734 * 119.94362 * 179.71781 * 9 8 6 11 11 C 1.38802 * 120.25635 * 0.55172 * 10 9 8 12 12 F 1.35104 * 119.84954 * 179.74246 * 11 10 9 13 13 C 1.38356 * 120.31230 * 359.72200 * 11 10 9 14 14 C 1.38579 * 120.05356 * 359.97438 * 13 11 10 15 15 O 1.35687 * 120.13348 * 179.97438 * 14 13 11 16 16 N 1.37431 * 107.24812 * 0.22823 * 4 3 2 17 17 H 0.96996 * 126.36757 * 179.74978 * 16 4 3 18 18 N 1.36413 * 125.52658 * 179.97438 * 2 1 3 19 19 C 1.46494 * 125.85521 * 0.03904 * 18 2 1 20 20 C 1.50703 * 109.47341 * 85.00039 * 19 18 2 21 21 H 1.08004 * 119.99992 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00367 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00033 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00194 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46853 * 60.00284 * 24 22 20 26 26 H 1.48495 * 109.47176 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47258 * 300.00672 * 24 22 20 28 28 H 1.08996 * 109.47775 * 90.02185 * 1 2 3 29 29 H 1.09005 * 109.46933 * 210.02702 * 1 2 3 30 30 H 1.09006 * 109.47163 * 330.02043 * 1 2 3 31 31 H 1.08011 * 125.87978 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.02250 * 359.97438 * 9 8 6 33 33 H 1.08004 * 119.87194 * 180.24884 * 10 9 8 34 34 H 1.08007 * 119.97782 * 180.02562 * 13 11 10 35 35 H 0.96695 * 114.00449 * 270.02468 * 15 14 13 36 36 H 1.09000 * 109.47581 * 204.99619 * 19 18 2 37 37 H 1.09002 * 109.47708 * 325.00087 * 19 18 2 38 38 H 0.96995 * 119.99771 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2916 1.0988 0.0000 4 6 3.6393 0.6794 0.0006 5 7 4.7106 1.4673 0.0003 6 6 4.5629 2.7976 -0.0001 7 8 3.4463 3.2868 -0.0006 8 6 5.7532 3.6730 -0.0064 9 6 7.0338 3.1160 -0.0006 10 6 8.1403 3.9362 -0.0124 11 6 7.9882 5.3158 -0.0186 12 9 9.0793 6.1126 -0.0249 13 6 6.7245 5.8790 -0.0187 14 6 5.6023 5.0660 -0.0132 15 8 4.3622 5.6167 -0.0127 16 7 3.6384 -0.6949 -0.0043 17 1 4.4191 -1.2705 -0.0085 18 7 2.2997 -1.1102 0.0005 19 6 1.8320 -2.4985 0.0003 20 6 1.5550 -2.9351 -1.4152 21 1 1.7121 -2.2474 -2.2330 22 6 1.1021 -4.2129 -1.6665 23 7 0.9112 -5.0506 -0.6707 24 14 0.7581 -4.7538 -3.4211 25 1 2.0031 -4.6502 -4.2240 26 1 0.2842 -6.1611 -3.4213 27 1 -0.2866 -3.8800 -4.0127 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3634 0.8902 0.5135 31 1 1.9473 2.1225 -0.0004 32 1 7.1563 2.0430 0.0090 33 1 9.1301 3.5041 -0.0119 34 1 6.6124 6.9533 -0.0239 35 1 4.0046 5.7801 0.8707 36 1 2.5983 -3.1402 0.4350 37 1 0.9179 -2.5741 0.5892 38 1 0.5922 -5.9493 -0.8475 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436664908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:37 Heat of formation + Delta-G solvation = -16.445480 kcal Electronic energy + Delta-G solvation = -25324.003289 eV Core-core repulsion = 21276.225218 eV Total energy + Delta-G solvation = -4047.778071 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.00112 -42.43157 -41.00217 -39.16645 -37.50589 -35.99822 -34.78329 -33.69526 -32.63624 -31.66610 -30.86656 -28.84197 -28.45037 -25.51105 -24.46822 -23.92814 -22.81484 -21.17894 -20.78140 -19.60947 -18.93554 -18.48669 -17.82639 -17.66551 -17.25049 -16.72384 -16.61107 -16.54124 -16.43566 -15.82909 -15.56606 -15.15728 -14.84343 -14.71428 -14.41930 -14.34541 -14.25934 -13.85445 -13.78515 -13.62127 -13.20909 -12.96863 -12.85216 -12.71688 -12.50183 -12.29373 -12.07290 -11.77113 -11.11121 -10.88903 -10.77031 -10.33261 -10.00223 -9.88219 -9.68892 -8.59385 -8.26957 -6.56269 -0.42827 0.14298 0.32057 0.54838 1.39304 1.42309 1.48640 1.52570 2.29963 2.31216 2.67814 2.90785 2.94648 3.18038 3.40094 3.45479 3.67023 3.79455 3.99486 4.21616 4.27057 4.28061 4.58113 4.67631 4.72948 4.84018 4.85578 4.93116 4.95711 5.02863 5.10319 5.18728 5.33105 5.38683 5.50679 5.69569 5.72763 5.97411 6.12963 6.40919 6.59841 6.77899 6.81652 7.17369 7.81468 8.66054 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023952 B = 0.002558 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.738941 B =10943.661212 C =11512.677837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.198 3.802 3 C -0.346 4.346 4 C 0.458 3.542 5 N -0.701 5.701 6 C 0.519 3.481 7 O -0.588 6.588 8 C -0.165 4.165 9 C -0.020 4.020 10 C -0.171 4.171 11 C 0.131 3.869 12 F -0.134 7.134 13 C -0.195 4.195 14 C 0.176 3.824 15 O -0.488 6.488 16 N -0.462 5.462 17 H 0.453 0.547 18 N -0.345 5.345 19 C 0.267 3.733 20 C -0.563 4.563 21 H 0.057 0.943 22 C 0.034 3.966 23 N -0.912 5.912 24 Si 0.961 3.039 25 H -0.277 1.277 26 H -0.279 1.279 27 H -0.267 1.267 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.176 0.824 32 H 0.154 0.846 33 H 0.168 0.832 34 H 0.162 0.838 35 H 0.409 0.591 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.926 12.873 4.020 15.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.071 3.929 3 C -0.377 4.377 4 C 0.208 3.792 5 N -0.465 5.465 6 C 0.307 3.693 7 O -0.471 6.471 8 C -0.169 4.169 9 C -0.038 4.038 10 C -0.189 4.189 11 C 0.111 3.889 12 F -0.113 7.113 13 C -0.214 4.214 14 C 0.129 3.871 15 O -0.301 6.301 16 N -0.185 5.185 17 H 0.302 0.698 18 N -0.131 5.131 19 C 0.150 3.850 20 C -0.601 4.601 21 H 0.075 0.925 22 C -0.169 4.169 23 N -0.549 5.549 24 Si 0.786 3.214 25 H -0.202 1.202 26 H -0.204 1.204 27 H -0.192 1.192 28 H 0.115 0.885 29 H 0.103 0.897 30 H 0.133 0.867 31 H 0.193 0.807 32 H 0.172 0.828 33 H 0.185 0.815 34 H 0.180 0.820 35 H 0.269 0.731 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.184 12.275 3.492 14.646 hybrid contribution -0.193 -0.485 -0.401 0.658 sum 6.991 11.790 3.092 14.052 Atomic orbital electron populations 1.20789 0.83651 1.05482 1.05157 1.21890 0.96043 0.84573 0.90412 1.22202 0.91350 1.00364 1.23821 1.19302 0.92083 0.82557 0.85212 1.68806 1.28168 1.05088 1.44460 1.19133 0.87603 0.86118 0.76443 1.90603 1.27290 1.79322 1.49931 1.20416 0.94710 0.93028 1.08710 1.21318 0.89422 1.01548 0.91531 1.21379 1.01428 0.90954 1.05165 1.17712 0.82472 0.88644 1.00067 1.91518 1.52487 1.73718 1.93562 1.21380 0.90015 1.02225 1.07807 1.18312 0.85325 0.88787 0.94679 1.84694 1.28351 1.82239 1.34835 1.44506 0.98961 1.04897 1.70127 0.69772 1.47853 0.93281 1.08041 1.63970 1.19735 0.96305 0.70810 0.98152 1.21488 1.47477 0.98649 0.92498 0.92469 1.25549 0.94166 0.95912 1.01271 1.69947 1.44776 1.07290 1.32899 0.85552 0.78766 0.77586 0.79540 1.20212 1.20425 1.19227 0.88455 0.89708 0.86711 0.80657 0.82811 0.81495 0.82026 0.73071 0.93860 0.91155 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.38 10.09 71.24 0.72 -1.66 16 2 C 0.20 6.69 6.93 41.11 0.28 6.98 16 3 C -0.35 -12.90 9.41 22.24 0.21 -12.69 16 4 C 0.46 17.55 8.07 133.91 1.08 18.63 16 5 N -0.70 -26.94 9.66 -311.32 -3.01 -29.95 16 6 C 0.52 20.13 7.68 86.91 0.67 20.80 16 7 O -0.59 -24.77 12.08 15.92 0.19 -24.58 16 8 C -0.16 -5.21 5.89 -19.96 -0.12 -5.33 16 9 C -0.02 -0.50 9.58 22.49 0.22 -0.29 16 10 C -0.17 -3.51 10.00 22.29 0.22 -3.29 16 11 C 0.13 2.80 7.30 22.43 0.16 2.97 16 12 F -0.13 -2.78 17.26 44.97 0.78 -2.00 16 13 C -0.20 -4.37 9.95 22.38 0.22 -4.15 16 14 C 0.18 4.91 6.71 22.81 0.15 5.06 16 15 O -0.49 -13.81 11.57 -69.13 -0.80 -14.61 16 16 N -0.46 -16.23 7.38 -54.80 -0.40 -16.64 16 17 H 0.45 13.84 8.96 -213.28 -1.91 11.93 16 18 N -0.35 -12.64 3.63 -337.53 -1.23 -13.87 16 19 C 0.27 10.84 5.93 85.64 0.51 11.34 16 20 C -0.56 -25.92 9.39 25.60 0.24 -25.68 16 21 H 0.06 2.73 7.81 -2.91 -0.02 2.71 16 22 C 0.03 1.58 5.46 84.65 0.46 2.05 16 23 N -0.91 -44.89 13.29 21.45 0.28 -44.61 16 24 Si 0.96 38.20 29.54 68.60 2.03 40.22 16 25 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.28 -10.88 7.11 99.48 0.71 -10.18 16 27 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 28 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.08 2.13 7.14 -2.38 -0.02 2.12 16 30 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.18 6.87 5.77 -2.90 -0.02 6.86 16 32 H 0.15 3.86 7.54 -2.91 -0.02 3.84 16 33 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.41 8.24 9.06 -74.06 -0.67 7.56 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 2.85 7.18 -2.39 -0.02 2.83 16 38 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 Total: -1.00 -61.23 340.44 1.44 -59.79 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: -1.43 Total: 31.48 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 5.03 Total: 14.74 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -4.35 Total: -105.06 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -0.61 Total: -39.18 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.22 kcal Total: -61.23 1.44 -59.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436664908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.348 kcal (2) G-P(sol) polarization free energy of solvation -61.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds