Wall clock time and date at job start Tue Mar 31 2020 12:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35032 * 125.53139 * 2 1 4 4 C 1.41136 * 108.23847 * 180.26070 * 3 2 1 5 5 N 1.33007 * 126.37195 * 179.97438 * 4 3 2 6 6 C 1.33800 * 119.99928 * 0.02562 * 5 4 3 7 7 O 1.21887 * 120.00193 * 0.02562 * 6 5 4 8 8 C 1.47873 * 119.99490 * 180.02562 * 6 5 4 9 9 C 1.39589 * 120.16894 * 359.72222 * 8 6 5 10 10 C 1.38034 * 119.89000 * 179.78789 * 9 8 6 11 11 F 1.35101 * 119.88422 * 180.25646 * 10 9 8 12 12 C 1.38705 * 120.23296 * 0.49537 * 10 9 8 13 13 C 1.38078 * 120.33338 * 359.73609 * 12 10 9 14 14 C 1.38665 * 120.11048 * 0.02639 * 13 12 10 15 15 O 1.35729 * 120.12069 * 179.97438 * 14 13 12 16 16 N 1.37416 * 107.25154 * 0.02562 * 4 3 2 17 17 H 0.97003 * 126.36164 * 179.97438 * 16 4 3 18 18 N 1.36415 * 125.52910 * 180.30642 * 2 1 3 19 19 C 1.46497 * 125.85244 * 359.75762 * 18 2 1 20 20 C 1.50699 * 109.47292 * 85.00129 * 19 18 2 21 21 H 1.07999 * 119.99600 * 359.97438 * 20 19 18 22 22 C 1.37873 * 120.00172 * 180.02562 * 20 19 18 23 23 N 1.31519 * 120.00139 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00003 * 359.97438 * 22 20 19 25 25 H 1.48494 * 109.46949 * 90.00364 * 24 22 20 26 26 H 1.48505 * 109.47097 * 210.00556 * 24 22 20 27 27 H 1.48497 * 109.47120 * 330.00086 * 24 22 20 28 28 H 1.08995 * 109.47019 * 269.69373 * 1 2 3 29 29 H 1.09001 * 109.46747 * 29.69533 * 1 2 3 30 30 H 1.09001 * 109.47371 * 149.69156 * 1 2 3 31 31 H 1.08001 * 125.88292 * 0.26392 * 3 2 1 32 32 H 1.08002 * 120.05876 * 0.02562 * 9 8 6 33 33 H 1.07999 * 119.82829 * 179.72041 * 12 10 9 34 34 H 1.08010 * 119.94196 * 180.02562 * 13 12 10 35 35 H 0.96703 * 114.00606 * 270.02637 * 15 14 13 36 36 H 1.08999 * 109.47037 * 205.00158 * 19 18 2 37 37 H 1.09000 * 109.47411 * 324.99682 * 19 18 2 38 38 H 0.96992 * 120.00005 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2918 1.0989 0.0000 4 6 3.6393 0.6794 -0.0061 5 7 4.7108 1.4674 -0.0085 6 6 4.5631 2.7973 -0.0044 7 8 3.4468 3.2865 0.0019 8 6 5.7544 3.6733 -0.0076 9 6 7.0345 3.1167 -0.0090 10 6 8.1425 3.9399 -0.0164 11 9 9.3814 3.4010 -0.0230 12 6 7.9885 5.3184 -0.0122 13 6 6.7267 5.8790 -0.0059 14 6 5.6039 5.0653 -0.0034 15 8 4.3635 5.6162 0.0032 16 7 3.6383 -0.6948 -0.0103 17 1 4.4190 -1.2705 -0.0152 18 7 2.2998 -1.1102 -0.0059 19 6 1.8321 -2.4985 -0.0083 20 6 1.5495 -2.9309 -1.4240 21 1 1.7026 -2.2405 -2.2402 22 6 1.0945 -4.2076 -1.6771 23 7 0.8484 -4.5852 -2.9126 24 14 0.8291 -5.4015 -0.2652 25 1 -0.5623 -5.2726 0.2371 26 1 1.0570 -6.7897 -0.7412 27 1 1.7818 -5.0916 0.8309 28 1 -0.3633 -0.0055 1.0276 29 1 -0.3633 0.8927 -0.5091 30 1 -0.3634 -0.8872 -0.5186 31 1 1.9475 2.1226 0.0040 32 1 7.1579 2.0438 -0.0081 33 1 8.8600 5.9563 -0.0134 34 1 6.6141 6.9533 -0.0031 35 1 4.0078 5.7740 0.8885 36 1 2.6002 -3.1413 0.4215 37 1 0.9204 -2.5758 0.5841 38 1 0.5280 -5.4832 -3.0906 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436668004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:39 Heat of formation + Delta-G solvation = -12.966474 kcal Electronic energy + Delta-G solvation = -25442.634790 eV Core-core repulsion = 21395.007580 eV Total energy + Delta-G solvation = -4047.627210 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.88023 -42.49737 -41.01590 -39.22487 -37.40750 -36.01042 -34.79293 -33.77105 -33.00350 -32.12073 -30.28918 -28.90599 -28.84971 -25.66290 -24.34791 -23.74027 -22.78447 -21.21701 -20.86122 -19.30928 -19.27902 -18.72937 -18.15253 -17.82101 -16.80348 -16.77899 -16.66305 -16.46950 -16.27140 -15.96549 -15.56569 -15.14084 -14.86044 -14.70799 -14.64749 -14.39459 -14.25273 -13.90060 -13.83947 -13.76390 -13.33827 -13.02803 -12.76480 -12.72801 -12.61419 -12.26316 -11.86842 -11.67595 -11.17459 -10.94196 -10.90211 -10.37956 -10.15806 -9.93309 -9.51840 -8.51518 -8.42862 -6.58621 -0.42934 0.08115 0.27710 0.49271 1.37267 1.38792 1.47247 1.48480 2.23921 2.30525 2.59192 2.90162 3.09040 3.15584 3.29253 3.38313 3.61959 3.80038 3.99910 4.12119 4.21558 4.29305 4.44938 4.55521 4.72236 4.76089 4.84842 4.90370 4.96377 4.98769 5.04951 5.06546 5.12248 5.28784 5.36205 5.73623 5.85954 5.98468 6.09065 6.42720 6.51784 6.72583 6.85436 7.07591 7.75088 8.72044 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021798 B = 0.002764 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.199623 B =10127.039864 C =11008.002816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.202 3.798 3 C -0.345 4.345 4 C 0.458 3.542 5 N -0.705 5.705 6 C 0.519 3.481 7 O -0.582 6.582 8 C -0.131 4.131 9 C -0.091 4.091 10 C 0.061 3.939 11 F -0.143 7.143 12 C -0.102 4.102 13 C -0.121 4.121 14 C 0.138 3.862 15 O -0.490 6.490 16 N -0.462 5.462 17 H 0.454 0.546 18 N -0.344 5.344 19 C 0.233 3.767 20 C -0.564 4.564 21 H 0.031 0.969 22 C 0.027 3.973 23 N -0.934 5.934 24 Si 0.947 3.053 25 H -0.252 1.252 26 H -0.288 1.288 27 H -0.235 1.235 28 H 0.119 0.881 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.178 0.822 32 H 0.141 0.859 33 H 0.176 0.824 34 H 0.176 0.824 35 H 0.407 0.593 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.762 13.946 11.786 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.076 3.924 3 C -0.376 4.376 4 C 0.209 3.791 5 N -0.469 5.469 6 C 0.306 3.694 7 O -0.465 6.465 8 C -0.134 4.134 9 C -0.110 4.110 10 C 0.042 3.958 11 F -0.121 7.121 12 C -0.121 4.121 13 C -0.139 4.139 14 C 0.091 3.909 15 O -0.302 6.302 16 N -0.185 5.185 17 H 0.303 0.697 18 N -0.130 5.130 19 C 0.115 3.885 20 C -0.602 4.602 21 H 0.050 0.950 22 C -0.175 4.175 23 N -0.571 5.571 24 Si 0.768 3.232 25 H -0.177 1.177 26 H -0.213 1.213 27 H -0.158 1.158 28 H 0.137 0.863 29 H 0.125 0.875 30 H 0.101 0.899 31 H 0.195 0.805 32 H 0.159 0.841 33 H 0.194 0.806 34 H 0.194 0.806 35 H 0.266 0.734 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.027 13.352 11.073 18.716 hybrid contribution -0.090 -1.190 0.109 1.198 sum 6.937 12.163 11.182 17.919 Atomic orbital electron populations 1.20881 0.83378 1.05657 1.05862 1.21931 0.96134 0.84414 0.89953 1.22231 0.91263 1.00541 1.23604 1.19313 0.92097 0.82629 0.85063 1.68817 1.28419 1.05315 1.44321 1.19123 0.87619 0.86083 0.76559 1.90600 1.26997 1.79266 1.49652 1.20126 0.93179 0.93616 1.06497 1.21306 0.90243 1.01460 0.98022 1.17736 0.79190 0.92570 1.06306 1.91491 1.39545 1.86815 1.94298 1.21490 0.99697 0.92280 0.98646 1.21507 0.89626 1.01938 1.00876 1.18828 0.86317 0.88792 0.96926 1.84723 1.28805 1.82027 1.34669 1.44482 0.98905 1.04915 1.70240 0.69683 1.47443 0.93310 1.07677 1.64604 1.20271 0.97792 0.72977 0.97501 1.21320 1.47756 0.99199 0.91898 0.95028 1.25798 0.93408 0.99593 0.98656 1.70029 1.44631 1.20478 1.21998 0.85748 0.80837 0.77599 0.79037 1.17660 1.21342 1.15765 0.86265 0.87494 0.89917 0.80546 0.84079 0.80619 0.80625 0.73357 0.91512 0.89049 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.46 9.92 71.24 0.71 -1.75 16 2 C 0.20 6.72 6.93 41.11 0.28 7.00 16 3 C -0.34 -12.91 9.41 22.24 0.21 -12.70 16 4 C 0.46 17.88 8.07 133.91 1.08 18.96 16 5 N -0.70 -28.17 9.67 -311.28 -3.01 -31.18 16 6 C 0.52 20.66 7.68 86.95 0.67 21.33 16 7 O -0.58 -24.70 12.08 15.97 0.19 -24.51 16 8 C -0.13 -4.27 5.89 -19.97 -0.12 -4.39 16 9 C -0.09 -2.67 9.56 22.55 0.22 -2.45 16 10 C 0.06 1.47 7.29 22.33 0.16 1.63 16 11 F -0.14 -3.49 17.26 44.97 0.78 -2.71 16 12 C -0.10 -1.81 10.01 22.34 0.22 -1.59 16 13 C -0.12 -2.24 9.97 22.33 0.22 -2.02 16 14 C 0.14 3.70 6.71 22.80 0.15 3.86 16 15 O -0.49 -13.31 11.57 -69.60 -0.81 -14.12 16 16 N -0.46 -16.22 7.38 -54.79 -0.40 -16.63 16 17 H 0.45 13.78 8.96 -213.28 -1.91 11.87 16 18 N -0.34 -12.20 3.63 -337.52 -1.23 -13.42 16 19 C 0.23 8.40 4.78 85.63 0.41 8.81 16 20 C -0.56 -27.08 9.94 25.60 0.25 -26.82 16 21 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 22 C 0.03 1.30 5.47 84.65 0.46 1.76 16 23 N -0.93 -51.88 13.96 21.45 0.30 -51.58 16 24 Si 0.95 34.86 27.47 68.60 1.88 36.74 16 25 H -0.25 -8.68 7.11 99.48 0.71 -7.98 16 26 H -0.29 -11.06 7.11 99.48 0.71 -10.35 16 27 H -0.23 -7.45 6.54 99.48 0.65 -6.80 16 28 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.08 2.26 7.81 -2.39 -0.02 2.24 16 31 H 0.18 6.93 5.77 -2.91 -0.02 6.91 16 32 H 0.14 4.37 7.55 -2.91 -0.02 4.35 16 33 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 34 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.41 7.76 9.06 -74.06 -0.67 7.08 16 36 H 0.07 2.23 7.20 -2.39 -0.02 2.21 16 37 H 0.09 2.82 7.32 -2.39 -0.02 2.80 16 38 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -71.24 337.84 1.15 -70.08 By element: Atomic # 1 Polarization: 37.19 SS G_CDS: -1.49 Total: 35.70 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 4.94 Total: 11.64 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -4.34 Total: -112.82 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.61 Total: -38.63 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.71 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 1.88 Total: 36.74 kcal Total: -71.24 1.15 -70.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436668004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.116 kcal (2) G-P(sol) polarization free energy of solvation -71.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds