Wall clock time and date at job start Tue Mar 31 2020 12:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47231 * 2 1 4 4 C 1.52997 * 109.47231 * 179.97438 * 3 2 1 5 5 H 1.08993 * 110.38342 * 57.77559 * 4 3 2 6 6 S 1.83604 * 110.43435 * 295.59129 * 4 3 2 7 7 C 1.84250 * 94.92304 * 222.86991 * 6 4 3 8 8 C 1.55402 * 99.76066 * 32.97639 * 7 6 4 9 9 N 1.46141 * 109.52198 * 319.64088 * 8 7 6 10 10 S 1.65604 * 122.49575 * 210.72027 * 9 8 7 11 11 O 1.42095 * 104.27934 * 333.95171 * 10 9 8 12 12 O 1.42105 * 104.27328 * 206.09468 * 10 9 8 13 13 C 1.81394 * 104.44930 * 90.02780 * 10 9 8 14 14 C 1.52994 * 109.47112 * 186.12832 * 13 10 9 15 15 C 1.50699 * 115.55181 * 294.73410 * 14 13 10 16 16 H 1.08001 * 120.00229 * 99.53232 * 15 14 13 17 17 C 1.37874 * 120.00132 * 279.53607 * 15 14 13 18 18 N 1.31517 * 120.00003 * 5.78638 * 17 15 14 19 19 Si 1.86798 * 120.00238 * 185.79000 * 17 15 14 20 20 H 1.48499 * 109.47392 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46700 * 299.99640 * 19 17 15 22 22 H 1.48492 * 109.47528 * 59.99651 * 19 17 15 23 23 C 1.53001 * 117.51828 * 80.43412 * 14 13 10 24 24 C 1.53007 * 60.00330 * 107.48426 * 23 14 13 25 25 H 1.09001 * 109.47332 * 59.99592 * 1 2 3 26 26 H 1.08995 * 109.47202 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46952 * 300.00049 * 1 2 3 28 28 H 1.08998 * 109.47138 * 240.00423 * 2 1 3 29 29 H 1.08997 * 109.47516 * 119.99934 * 2 1 3 30 30 H 1.09003 * 109.46538 * 59.99731 * 3 2 1 31 31 H 1.08997 * 109.46816 * 300.00363 * 3 2 1 32 32 H 1.08997 * 111.34615 * 275.34721 * 7 6 4 33 33 H 1.08998 * 111.39061 * 150.62560 * 7 6 4 34 34 H 1.08999 * 109.46912 * 199.61478 * 8 7 6 35 35 H 1.09000 * 109.43462 * 79.64487 * 8 7 6 36 36 H 1.09001 * 109.47630 * 66.12631 * 13 10 9 37 37 H 1.09008 * 109.47020 * 306.12861 * 13 10 9 38 38 H 0.97004 * 120.00082 * 354.98993 * 18 17 15 39 39 H 1.08998 * 117.50257 * 214.96724 * 23 14 13 40 40 H 1.08996 * 117.50211 * 359.97438 * 23 14 13 41 41 H 1.08995 * 117.49822 * 252.51720 * 24 23 14 42 42 H 1.08994 * 117.50159 * 107.48647 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9500 0.8976 -0.8634 6 16 4.2104 0.6996 1.5527 7 6 5.5262 1.9649 1.8026 8 6 4.8120 3.2092 1.2054 9 7 4.0811 2.8214 0.0007 10 16 3.8404 3.8597 -1.2668 11 8 3.8924 5.1512 -0.6766 12 8 2.6536 3.3852 -1.8878 13 6 5.2735 3.5951 -2.3470 14 6 5.2463 4.6131 -3.4888 15 6 4.0929 4.4813 -4.4498 16 1 3.2327 5.1271 -4.3529 17 6 4.1358 3.5362 -5.4527 18 7 5.1285 2.6749 -5.5026 19 14 2.7841 3.4790 -6.7407 20 1 3.0608 2.3800 -7.7003 21 1 1.4777 3.2385 -6.0767 22 1 2.7387 4.7726 -7.4685 23 6 5.7601 6.0232 -3.1911 24 6 6.5902 5.0735 -4.0571 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 6.4268 1.7169 1.2410 33 1 5.7478 2.1044 2.8606 34 1 5.5534 3.9670 0.9523 35 1 4.1146 3.6139 1.9388 36 1 5.2371 2.5865 -2.7586 37 1 6.1905 3.7196 -1.7710 38 1 5.8674 2.7497 -4.8786 39 1 5.2640 6.8555 -3.6903 40 1 6.1173 6.2260 -2.1815 41 1 7.4937 4.6513 -3.6172 42 1 6.6402 5.2809 -5.1259 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451358590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:48 Heat of formation + Delta-G solvation = -56.162329 kcal Electronic energy + Delta-G solvation = -24243.165735 eV Core-core repulsion = 20863.029788 eV Total energy + Delta-G solvation = -3380.135947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -37.65618 -37.15444 -36.60342 -35.31590 -34.68339 -32.07432 -30.70712 -28.51174 -28.10410 -25.04326 -24.33296 -22.37409 -21.49554 -21.20590 -19.89188 -18.58590 -17.67280 -16.95347 -16.60522 -16.12334 -15.33506 -15.21057 -14.92120 -14.28083 -14.11803 -13.80048 -13.77395 -13.34411 -13.08491 -13.01205 -12.68864 -12.63722 -12.32803 -11.94739 -11.73192 -11.60424 -11.45404 -11.42022 -11.28087 -11.14098 -10.84051 -10.82044 -10.73861 -10.63787 -10.47014 -10.12854 -9.87527 -9.79196 -9.19646 -8.73914 -8.59747 -8.36824 -7.89529 -6.51467 -4.31261 0.69175 1.63268 2.05622 2.98426 3.41268 3.45117 3.61926 4.20862 4.34804 4.43770 4.63690 4.67134 4.85713 4.87938 4.99101 5.06311 5.12775 5.20787 5.21804 5.28704 5.36278 5.57140 5.59999 5.66025 5.69308 5.86227 5.92847 5.97658 5.99737 6.08226 6.24263 6.26319 6.34061 6.37348 6.45835 6.56323 6.67689 6.93059 7.09095 7.95984 8.27008 8.69818 9.47726 10.87718 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.013596 B = 0.005729 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.884331 B = 4885.915172 C = 6076.179129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.145 4.145 4 C 0.211 3.789 5 H 0.102 0.898 6 S -0.273 6.273 7 C -0.081 4.081 8 C 0.115 3.885 9 N -1.014 6.014 10 S 2.618 3.382 11 O -0.962 6.962 12 O -0.931 6.931 13 C -0.565 4.565 14 C 0.021 3.979 15 C -0.590 4.590 16 H 0.062 0.938 17 C 0.040 3.960 18 N -0.896 5.896 19 Si 1.062 2.938 20 H -0.281 1.281 21 H -0.280 1.280 22 H -0.285 1.285 23 C -0.191 4.191 24 C -0.165 4.165 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.099 0.901 38 H 0.274 0.726 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.055 -3.463 13.304 13.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.185 4.185 4 C -0.006 4.006 5 H 0.120 0.880 6 S -0.048 6.048 7 C -0.230 4.230 8 C -0.012 4.012 9 N -0.850 5.850 10 S 2.715 3.285 11 O -0.953 6.953 12 O -0.921 6.921 13 C -0.698 4.698 14 C 0.018 3.982 15 C -0.626 4.626 16 H 0.080 0.920 17 C -0.167 4.167 18 N -0.530 5.530 19 Si 0.889 3.111 20 H -0.206 1.206 21 H -0.206 1.206 22 H -0.211 1.211 23 C -0.229 4.229 24 C -0.204 4.204 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.137 0.863 32 H 0.116 0.884 33 H 0.137 0.863 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.146 0.854 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.563 -4.722 12.556 13.505 hybrid contribution 1.815 1.421 0.652 2.396 sum 0.253 -3.302 13.207 13.616 Atomic orbital electron populations 1.21724 0.95393 1.01412 1.02132 1.21471 0.96383 0.95913 1.02129 1.22463 0.91333 0.98827 1.05881 1.23487 0.97472 0.82829 0.96779 0.88046 1.87957 1.41353 1.41484 1.34003 1.24774 0.98813 0.94140 1.05309 1.21852 0.95598 0.96083 0.87667 1.58975 1.69288 1.24518 1.32194 1.05117 0.77528 0.72910 0.72903 1.93509 1.87880 1.37898 1.75975 1.93497 1.42856 1.80048 1.75711 1.30143 1.16958 1.10653 1.12032 1.18572 0.96207 0.89247 0.94143 1.21374 1.02722 1.23766 1.14778 0.91969 1.25821 1.01183 0.91435 0.98305 1.70782 1.09586 1.33149 1.39453 0.83648 0.75271 0.76429 0.75777 1.20591 1.20620 1.21124 1.23041 1.05580 0.94830 0.99400 1.22823 0.94198 1.04316 0.99060 0.92206 0.92831 0.92856 0.91577 0.91826 0.90806 0.86335 0.88354 0.86317 0.89031 0.90186 0.85378 0.88219 0.91479 0.89165 0.90498 0.91195 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.12 -1.54 5.77 -26.73 -0.15 -1.69 16 3 C -0.14 -2.14 4.78 -26.73 -0.13 -2.27 16 4 C 0.21 3.09 3.38 -3.74 -0.01 3.07 16 5 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 6 S -0.27 -3.42 21.63 -107.50 -2.33 -5.75 16 7 C -0.08 -0.79 7.72 38.43 0.30 -0.50 16 8 C 0.12 1.39 6.21 -2.96 -0.02 1.38 16 9 N -1.01 -15.52 3.22 -108.57 -0.35 -15.87 16 10 S 2.62 51.40 5.22 -107.50 -0.56 50.84 16 11 O -0.96 -20.37 17.30 -57.54 -1.00 -21.37 16 12 O -0.93 -21.00 14.46 -57.54 -0.83 -21.84 16 13 C -0.57 -11.42 5.89 37.15 0.22 -11.20 16 14 C 0.02 0.49 0.85 -155.66 -0.13 0.36 16 15 C -0.59 -15.89 8.17 -34.44 -0.28 -16.17 16 16 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 17 C 0.04 1.09 5.42 -17.82 -0.10 0.99 16 18 N -0.90 -25.18 13.61 55.43 0.75 -24.43 16 19 Si 1.06 24.72 29.91 -169.99 -5.08 19.64 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 C -0.19 -4.06 9.96 -26.73 -0.27 -4.32 16 24 C -0.16 -3.57 9.00 -26.72 -0.24 -3.81 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.77 7.18 -51.93 -0.37 0.40 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.12 2.06 5.49 -51.93 -0.28 1.78 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.00 7.94 -51.93 -0.41 0.59 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.13 2.70 7.60 -51.92 -0.39 2.31 16 37 H 0.10 1.67 8.09 -51.92 -0.42 1.25 16 38 H 0.27 7.50 6.07 -40.82 -0.25 7.26 16 39 H 0.09 1.91 8.14 -51.93 -0.42 1.48 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 42 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 LS Contribution 359.76 15.07 5.42 5.42 Total: -1.00 -31.53 359.76 -11.25 -42.78 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.83 Total: 6.09 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: -0.45 Total: -35.51 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.40 Total: -40.30 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -1.83 Total: -43.20 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.08 Total: 19.64 kcal Atomic # 16 Polarization: 47.98 SS G_CDS: -2.89 Total: 45.09 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.53 -11.25 -42.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451358590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.384 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds