Wall clock time and date at job start Tue Mar 31 2020 12:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00516 * 2 1 4 4 C 1.53000 * 109.47307 * 125.00267 * 3 2 1 5 5 C 1.52995 * 109.47058 * 65.00404 * 4 3 2 6 6 C 1.50694 * 109.47353 * 62.85589 * 5 4 3 7 7 C 1.31003 * 120.00293 * 125.25836 * 6 5 4 8 8 C 1.50702 * 109.47075 * 185.00436 * 4 3 2 9 9 O 1.21283 * 120.00213 * 336.89859 * 8 4 3 10 10 N 1.34780 * 119.99968 * 157.17737 * 8 4 3 11 11 C 1.39265 * 120.00027 * 186.22266 * 10 8 4 12 12 C 1.39463 * 119.84051 * 17.44870 * 11 10 8 13 13 C 1.36374 * 120.17978 * 179.76407 * 12 11 10 14 14 C 1.40889 * 119.84801 * 0.51628 * 13 12 11 15 15 C 1.41148 * 120.15685 * 179.76753 * 14 13 12 16 16 H 1.07998 * 120.00070 * 157.87664 * 15 14 13 17 17 C 1.39903 * 120.00069 * 337.87239 * 15 14 13 18 18 N 1.30870 * 120.00166 * 154.08176 * 17 15 14 19 19 Si 1.86800 * 119.99750 * 334.07858 * 17 15 14 20 20 H 1.48504 * 109.46910 * 95.29145 * 19 17 15 21 21 H 1.48498 * 109.47332 * 215.28722 * 19 17 15 22 22 H 1.48500 * 109.47418 * 335.29399 * 19 17 15 23 23 C 1.40838 * 119.68465 * 359.73598 * 14 13 12 24 24 C 1.36478 * 119.81916 * 0.02562 * 23 14 13 25 25 Cl 1.73599 * 119.92993 * 179.97438 * 24 23 14 26 26 H 1.08001 * 119.99507 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00440 * 179.97438 * 1 2 3 28 28 H 1.08009 * 119.99555 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47030 * 5.00021 * 3 2 1 30 30 H 1.09006 * 109.47374 * 245.00578 * 3 2 1 31 31 H 1.09000 * 109.46841 * 304.99869 * 4 3 2 32 32 H 1.08999 * 109.46975 * 182.85854 * 5 4 3 33 33 H 1.08998 * 109.47127 * 302.85246 * 5 4 3 34 34 H 1.07998 * 119.99871 * 305.25421 * 6 5 4 35 35 H 1.07998 * 119.99836 * 359.97438 * 7 6 5 36 36 H 1.07997 * 120.00045 * 179.97438 * 7 6 5 37 37 H 0.96997 * 119.99464 * 6.21872 * 10 8 4 38 38 H 1.08000 * 119.90942 * 0.02562 * 12 11 10 39 39 H 1.08005 * 120.07541 * 180.23793 * 13 12 11 40 40 H 0.97006 * 119.99883 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.08955 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0352 1.3329 1.1816 5 6 4.1000 0.2508 0.9919 6 6 4.9019 0.5471 -0.2490 7 6 6.2070 0.6373 -0.1795 8 6 3.6992 2.6838 1.2541 9 8 3.7684 3.3795 0.2631 10 7 4.2212 3.1165 2.4190 11 6 4.7182 4.4135 2.5202 12 6 4.3601 5.3699 1.5704 13 6 4.8389 6.6433 1.6656 14 6 5.7062 6.9893 2.7206 15 6 6.2095 8.3041 2.8226 16 1 6.5624 8.6749 3.7735 17 6 6.2512 9.1268 1.6918 18 7 6.2180 10.4280 1.8277 19 14 6.3545 8.3679 -0.0120 20 1 4.9902 8.2567 -0.5878 21 1 7.1923 9.2272 -0.8866 22 1 6.9630 7.0167 0.0840 23 6 6.0680 6.0173 3.6734 24 6 5.5772 4.7482 3.5682 25 17 6.0218 3.5476 4.7407 26 1 -0.5399 0.9354 0.0004 27 1 -0.5401 -0.9352 -0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6214 1.4025 -0.9315 31 1 2.4884 1.1468 2.1060 32 1 4.7620 0.2368 1.8577 33 1 3.6164 -0.7206 0.8887 34 1 4.4008 0.6849 -1.1957 35 1 6.7081 0.4998 0.7672 36 1 6.7817 0.8493 -1.0690 37 1 4.2506 2.5244 3.1867 38 1 3.6986 5.1025 0.7598 39 1 4.5575 7.3836 0.9313 40 1 6.2473 10.9984 1.0436 41 1 6.7320 6.2755 4.4851 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452643892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:06 Heat of formation + Delta-G solvation = 9.860351 kcal Electronic energy + Delta-G solvation = -24079.627901 eV Core-core repulsion = 20564.867255 eV Total energy + Delta-G solvation = -3514.760646 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.25489 -38.07680 -36.46160 -35.81474 -34.51599 -34.14622 -33.26193 -31.19194 -29.74966 -29.55981 -26.43927 -25.50255 -23.43317 -22.02261 -21.11951 -20.47749 -19.72202 -18.85191 -17.70384 -17.31267 -16.54780 -15.83498 -15.32490 -15.17050 -14.79188 -14.38816 -14.24163 -13.99151 -13.68952 -13.36963 -13.02358 -12.92042 -12.74668 -12.56129 -12.27588 -12.08381 -11.90064 -11.57816 -11.16278 -11.12788 -11.01435 -10.89066 -10.79800 -10.68806 -10.57323 -10.25099 -9.83463 -9.66393 -9.49799 -9.33894 -9.12948 -8.75599 -7.80626 -7.27755 -7.14036 -4.52828 2.08036 2.20849 2.33389 2.50684 2.87322 2.99616 3.12704 3.19784 3.31774 3.58603 3.90018 4.31841 4.62442 4.67125 4.79188 4.98791 5.02854 5.20829 5.27478 5.29887 5.34723 5.53930 5.67818 5.72604 5.86586 5.93957 5.97272 6.09945 6.29447 6.43122 6.47305 6.58190 6.60459 6.65740 6.76013 6.78624 6.90167 7.16547 7.20191 7.49999 7.72670 7.85857 8.04222 8.18261 8.45626 8.61278 8.68269 9.84276 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.013936 B = 0.004027 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.649187 B = 6951.354177 C = 7788.972163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C -0.078 4.078 4 C -0.097 4.097 5 C -0.082 4.082 6 C -0.154 4.154 7 C -0.186 4.186 8 C 0.507 3.493 9 O -0.525 6.525 10 N -0.646 5.646 11 C -0.002 4.002 12 C -0.068 4.068 13 C -0.234 4.234 14 C 0.091 3.909 15 C -0.431 4.431 16 H 0.094 0.906 17 C 0.087 3.913 18 N -0.786 5.786 19 Si 0.912 3.088 20 H -0.266 1.266 21 H -0.289 1.289 22 H -0.243 1.243 23 C -0.196 4.196 24 C -0.001 4.001 25 Cl -0.116 7.116 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.399 0.601 38 H 0.141 0.859 39 H 0.107 0.893 40 H 0.289 0.711 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.684 -17.813 -1.915 18.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.168 4.168 3 C -0.115 4.115 4 C -0.118 4.118 5 C -0.120 4.120 6 C -0.172 4.172 7 C -0.222 4.222 8 C 0.294 3.706 9 O -0.402 6.402 10 N -0.288 5.288 11 C -0.095 4.095 12 C -0.088 4.088 13 C -0.254 4.254 14 C 0.088 3.912 15 C -0.458 4.458 16 H 0.112 0.888 17 C -0.135 4.135 18 N -0.407 5.407 19 Si 0.738 3.262 20 H -0.192 1.192 21 H -0.216 1.216 22 H -0.167 1.167 23 C -0.217 4.217 24 C -0.029 4.029 25 Cl -0.088 7.088 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.127 0.873 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.233 0.767 38 H 0.158 0.842 39 H 0.125 0.875 40 H 0.100 0.900 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.599 -17.134 -2.555 18.206 hybrid contribution 0.181 -0.446 -0.112 0.495 sum -5.418 -17.581 -2.667 18.589 Atomic orbital electron populations 1.23869 0.95994 1.01795 1.01665 1.22991 0.95920 0.98431 0.99451 1.20613 0.97300 0.95278 0.98339 1.21260 0.96725 0.92970 1.00865 1.20721 0.96547 0.97812 0.96911 1.22837 0.95659 1.00109 0.98614 1.23810 0.96126 1.00544 1.01758 1.20407 0.79502 0.87937 0.82779 1.90567 1.57862 1.56723 1.35095 1.42988 1.59526 1.13053 1.13245 1.16838 1.06661 0.84819 1.01223 1.20915 0.98835 0.91477 0.97554 1.20824 1.05173 0.96489 1.02877 1.17590 0.90651 0.92363 0.90640 1.19481 1.34498 0.94219 0.97609 0.88823 1.26253 0.90446 0.94293 1.02522 1.69761 1.31565 1.05180 1.34237 0.86338 0.79133 0.80909 0.79827 1.19199 1.21616 1.16651 1.20408 1.06379 0.90688 1.04203 1.20158 1.00449 0.90281 0.92037 1.98261 1.92298 1.58648 1.59611 0.88557 0.88633 0.87255 0.90959 0.89508 0.89003 0.91088 0.89852 0.87087 0.88784 0.88600 0.76672 0.84155 0.87503 0.90001 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.63 14.32 29.01 0.42 -1.22 16 2 C -0.15 -1.32 9.02 -36.03 -0.33 -1.64 16 3 C -0.08 -0.85 4.43 -27.89 -0.12 -0.98 16 4 C -0.10 -1.10 2.49 -91.77 -0.23 -1.33 16 5 C -0.08 -0.82 5.30 -27.89 -0.15 -0.97 16 6 C -0.15 -1.81 8.04 -36.03 -0.29 -2.10 16 7 C -0.19 -2.27 14.32 29.01 0.42 -1.85 16 8 C 0.51 8.16 6.03 -10.98 -0.07 8.10 16 9 O -0.53 -10.32 12.81 5.55 0.07 -10.25 16 10 N -0.65 -10.91 5.25 -9.71 -0.05 -10.96 16 11 C 0.00 -0.03 6.54 -83.53 -0.55 -0.58 16 12 C -0.07 -1.56 8.73 -39.80 -0.35 -1.91 16 13 C -0.23 -5.72 7.39 -39.25 -0.29 -6.01 16 14 C 0.09 2.28 5.24 -106.81 -0.56 1.72 16 15 C -0.43 -11.27 9.52 -37.85 -0.36 -11.63 16 16 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 17 C 0.09 2.22 5.33 -17.34 -0.09 2.12 16 18 N -0.79 -20.10 13.93 55.55 0.77 -19.33 16 19 Si 0.91 20.71 24.60 -169.99 -4.18 16.53 16 20 H -0.27 -5.95 6.55 56.52 0.37 -5.58 16 21 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.24 -5.79 7.05 56.52 0.40 -5.39 16 23 C -0.20 -4.49 9.50 -39.23 -0.37 -4.86 16 24 C 0.00 -0.02 6.30 -39.71 -0.25 -0.27 16 25 Cl -0.12 -1.97 27.65 -51.86 -1.43 -3.41 16 26 H 0.10 0.81 7.84 -52.49 -0.41 0.40 16 27 H 0.10 0.66 8.06 -52.49 -0.42 0.23 16 28 H 0.11 0.81 6.90 -52.48 -0.36 0.45 16 29 H 0.07 0.86 7.79 -51.93 -0.40 0.46 16 30 H 0.09 1.04 6.33 -51.93 -0.33 0.71 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.69 7.79 -51.93 -0.40 0.29 16 33 H 0.08 0.65 6.62 -51.93 -0.34 0.30 16 34 H 0.11 1.29 6.77 -52.49 -0.36 0.94 16 35 H 0.09 1.11 7.84 -52.49 -0.41 0.70 16 36 H 0.10 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.40 5.70 7.55 -40.82 -0.31 5.39 16 38 H 0.14 3.21 5.27 -52.56 -0.28 2.93 16 39 H 0.11 2.62 4.25 -52.48 -0.22 2.39 16 40 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 41 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 351.06 15.07 5.29 5.29 Total: -1.00 -27.69 351.06 -7.81 -35.50 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -5.11 Total: 10.02 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -3.17 Total: -23.40 kcal Atomic # 7 Polarization: -31.01 SS G_CDS: 0.72 Total: -30.29 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.18 Total: 16.53 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -1.43 Total: -3.41 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.69 -7.81 -35.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452643892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.361 kcal (2) G-P(sol) polarization free energy of solvation -27.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds