Wall clock time and date at job start Tue Mar 31 2020 12:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00516 * 2 1 4 4 C 1.53000 * 109.47307 * 125.00267 * 3 2 1 5 5 C 1.52995 * 109.47058 * 65.00404 * 4 3 2 6 6 C 1.50694 * 109.47353 * 62.85589 * 5 4 3 7 7 C 1.31003 * 120.00293 * 125.25836 * 6 5 4 8 8 C 1.50702 * 109.47075 * 185.00436 * 4 3 2 9 9 O 1.21283 * 120.00213 * 336.89859 * 8 4 3 10 10 N 1.34780 * 119.99968 * 157.17737 * 8 4 3 11 11 C 1.39265 * 120.00027 * 186.22266 * 10 8 4 12 12 C 1.39463 * 119.84051 * 17.44870 * 11 10 8 13 13 C 1.36374 * 120.17978 * 179.76407 * 12 11 10 14 14 C 1.40889 * 119.84801 * 0.51628 * 13 12 11 15 15 C 1.41148 * 120.15685 * 179.76753 * 14 13 12 16 16 H 1.07998 * 120.00070 * 157.87664 * 15 14 13 17 17 C 1.39903 * 120.00069 * 337.87239 * 15 14 13 18 18 N 1.30870 * 120.00166 * 154.08176 * 17 15 14 19 19 Si 1.86800 * 119.99750 * 334.07858 * 17 15 14 20 20 H 1.48504 * 109.46910 * 95.29145 * 19 17 15 21 21 H 1.48498 * 109.47332 * 215.28722 * 19 17 15 22 22 H 1.48500 * 109.47418 * 335.29399 * 19 17 15 23 23 C 1.40838 * 119.68465 * 359.73598 * 14 13 12 24 24 C 1.36478 * 119.81916 * 0.02562 * 23 14 13 25 25 Cl 1.73599 * 119.92993 * 179.97438 * 24 23 14 26 26 H 1.08001 * 119.99507 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00440 * 179.97438 * 1 2 3 28 28 H 1.08009 * 119.99555 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47030 * 5.00021 * 3 2 1 30 30 H 1.09006 * 109.47374 * 245.00578 * 3 2 1 31 31 H 1.09000 * 109.46841 * 304.99869 * 4 3 2 32 32 H 1.08999 * 109.46975 * 182.85854 * 5 4 3 33 33 H 1.08998 * 109.47127 * 302.85246 * 5 4 3 34 34 H 1.07998 * 119.99871 * 305.25421 * 6 5 4 35 35 H 1.07998 * 119.99836 * 359.97438 * 7 6 5 36 36 H 1.07997 * 120.00045 * 179.97438 * 7 6 5 37 37 H 0.96997 * 119.99464 * 6.21872 * 10 8 4 38 38 H 1.08000 * 119.90942 * 0.02562 * 12 11 10 39 39 H 1.08005 * 120.07541 * 180.23793 * 13 12 11 40 40 H 0.97006 * 119.99883 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.08955 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0352 1.3329 1.1816 5 6 4.1000 0.2508 0.9919 6 6 4.9019 0.5471 -0.2490 7 6 6.2070 0.6373 -0.1795 8 6 3.6992 2.6838 1.2541 9 8 3.7684 3.3795 0.2631 10 7 4.2212 3.1165 2.4190 11 6 4.7182 4.4135 2.5202 12 6 4.3601 5.3699 1.5704 13 6 4.8389 6.6433 1.6656 14 6 5.7062 6.9893 2.7206 15 6 6.2095 8.3041 2.8226 16 1 6.5624 8.6749 3.7735 17 6 6.2512 9.1268 1.6918 18 7 6.2180 10.4280 1.8277 19 14 6.3545 8.3679 -0.0120 20 1 4.9902 8.2567 -0.5878 21 1 7.1923 9.2272 -0.8866 22 1 6.9630 7.0167 0.0840 23 6 6.0680 6.0173 3.6734 24 6 5.5772 4.7482 3.5682 25 17 6.0218 3.5476 4.7407 26 1 -0.5399 0.9354 0.0004 27 1 -0.5401 -0.9352 -0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6214 1.4025 -0.9315 31 1 2.4884 1.1468 2.1060 32 1 4.7620 0.2368 1.8577 33 1 3.6164 -0.7206 0.8887 34 1 4.4008 0.6849 -1.1957 35 1 6.7081 0.4998 0.7672 36 1 6.7817 0.8493 -1.0690 37 1 4.2506 2.5244 3.1867 38 1 3.6986 5.1025 0.7598 39 1 4.5575 7.3836 0.9313 40 1 6.2473 10.9984 1.0436 41 1 6.7320 6.2755 4.4851 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452643892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:06 Heat of formation + Delta-G solvation = -4.242737 kcal Electronic energy + Delta-G solvation = -24080.239457 eV Core-core repulsion = 20564.867255 eV Total energy + Delta-G solvation = -3515.372202 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.64728 -39.66435 -37.56419 -37.41328 -36.12629 -35.08850 -34.87738 -32.26717 -31.55048 -31.15298 -27.31425 -27.07993 -24.70628 -23.79766 -22.73355 -21.45915 -20.84491 -19.84502 -19.52126 -18.80981 -17.90946 -17.18225 -16.70213 -16.30065 -16.10550 -15.96799 -15.59229 -15.36063 -14.79003 -14.74807 -14.49846 -14.39676 -14.31483 -14.00268 -13.56582 -13.34005 -13.06943 -12.81001 -12.70752 -12.62760 -12.49210 -12.27606 -11.97255 -11.85319 -11.83699 -11.70493 -11.62087 -11.32154 -10.93183 -10.47733 -10.18497 -10.08137 -9.58666 -9.08676 -8.96986 -6.45809 0.46740 0.66661 1.21867 1.23247 1.33196 1.40357 1.41771 1.44929 1.73701 2.05849 2.25492 2.47584 3.39226 3.60627 3.77825 3.93806 4.14815 4.18080 4.27935 4.35833 4.39260 4.48776 4.51430 4.73927 4.77077 4.78838 4.88978 4.95821 5.01043 5.02161 5.13215 5.16447 5.25425 5.36832 5.44459 5.72074 5.74583 5.80738 5.81483 5.88120 5.95915 6.03929 6.25668 6.58191 6.62331 6.70996 7.29502 8.00955 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.013936 B = 0.004027 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.649187 B = 6951.354177 C = 7788.972163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.153 4.153 3 C -0.076 4.076 4 C -0.085 4.085 5 C -0.079 4.079 6 C -0.157 4.157 7 C -0.204 4.204 8 C 0.505 3.495 9 O -0.560 6.560 10 N -0.643 5.643 11 C 0.022 3.978 12 C -0.084 4.084 13 C -0.244 4.244 14 C 0.076 3.924 15 C -0.467 4.467 16 H 0.070 0.930 17 C 0.062 3.938 18 N -0.819 5.819 19 Si 0.957 3.043 20 H -0.263 1.263 21 H -0.269 1.269 22 H -0.262 1.262 23 C -0.201 4.201 24 C -0.007 4.007 25 Cl -0.073 7.073 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.130 0.870 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.414 0.586 38 H 0.142 0.858 39 H 0.101 0.899 40 H 0.299 0.701 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.712 -21.500 -1.677 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.171 4.171 3 C -0.114 4.114 4 C -0.107 4.107 5 C -0.116 4.116 6 C -0.175 4.175 7 C -0.241 4.241 8 C 0.295 3.705 9 O -0.438 6.438 10 N -0.287 5.287 11 C -0.073 4.073 12 C -0.104 4.104 13 C -0.264 4.264 14 C 0.072 3.928 15 C -0.495 4.495 16 H 0.089 0.911 17 C -0.157 4.157 18 N -0.443 5.443 19 Si 0.781 3.219 20 H -0.189 1.189 21 H -0.195 1.195 22 H -0.186 1.186 23 C -0.222 4.222 24 C -0.036 4.036 25 Cl -0.044 7.044 26 H 0.108 0.892 27 H 0.132 0.868 28 H 0.148 0.852 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.138 0.862 32 H 0.097 0.903 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.252 0.748 38 H 0.159 0.841 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.635 -20.849 -2.302 22.000 hybrid contribution 0.404 0.417 -0.117 0.592 sum -6.231 -20.432 -2.420 21.498 Atomic orbital electron populations 1.24040 0.96033 1.02433 1.00553 1.22942 0.95956 0.97811 1.00346 1.20560 0.96943 0.96306 0.97548 1.21306 0.96976 0.89959 1.02423 1.20800 0.96099 0.98548 0.96183 1.23044 0.95701 0.99248 0.99482 1.23917 0.96620 1.01564 1.01965 1.21400 0.78184 0.89292 0.81641 1.90555 1.58741 1.58227 1.36326 1.43051 1.59468 1.11690 1.14514 1.16970 1.04585 0.86150 0.99629 1.21041 0.99359 0.91504 0.98475 1.20877 1.05508 0.97151 1.02858 1.17705 0.90998 0.92480 0.91596 1.19446 1.37262 0.95525 0.97294 0.91147 1.26694 0.90124 0.94482 1.04427 1.69758 1.33361 1.05812 1.35412 0.85663 0.79223 0.79482 0.77550 1.18936 1.19531 1.18645 1.20554 1.06436 0.91300 1.03877 1.20147 0.99798 0.90732 0.92923 1.98270 1.91912 1.56479 1.57771 0.89237 0.86796 0.85217 0.92511 0.90912 0.86168 0.90253 0.86598 0.87431 0.88383 0.88965 0.74798 0.84066 0.88166 0.89002 0.86246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.60 14.32 67.78 0.97 -1.63 16 2 C -0.15 -2.14 9.02 25.65 0.23 -1.91 16 3 C -0.08 -1.48 4.43 29.85 0.13 -1.35 16 4 C -0.09 -1.65 2.49 -11.54 -0.03 -1.68 16 5 C -0.08 -1.26 5.30 29.84 0.16 -1.10 16 6 C -0.16 -3.32 8.04 25.64 0.21 -3.11 16 7 C -0.20 -4.66 14.32 67.78 0.97 -3.69 16 8 C 0.51 15.15 6.03 87.66 0.53 15.68 16 9 O -0.56 -21.43 12.81 -3.04 -0.04 -21.47 16 10 N -0.64 -20.02 5.25 -303.02 -1.59 -21.61 16 11 C 0.02 0.88 6.54 38.58 0.25 1.14 16 12 C -0.08 -3.84 8.73 22.13 0.19 -3.64 16 13 C -0.24 -12.14 7.39 22.48 0.17 -11.98 16 14 C 0.08 3.87 5.24 -21.28 -0.11 3.76 16 15 C -0.47 -25.57 9.52 23.39 0.22 -25.35 16 16 H 0.07 4.03 8.06 -2.91 -0.02 4.01 16 17 C 0.06 3.25 5.33 85.24 0.45 3.70 16 18 N -0.82 -43.36 13.93 21.82 0.30 -43.06 16 19 Si 0.96 43.62 24.60 68.60 1.69 45.31 16 20 H -0.26 -11.75 6.55 99.48 0.65 -11.10 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 22 H -0.26 -12.63 7.05 99.48 0.70 -11.93 16 23 C -0.20 -9.21 9.50 22.50 0.21 -8.99 16 24 C -0.01 -0.29 6.30 22.18 0.14 -0.15 16 25 Cl -0.07 -2.26 27.65 -2.72 -0.08 -2.33 16 26 H 0.09 1.32 7.84 -2.91 -0.02 1.29 16 27 H 0.11 1.13 8.06 -2.91 -0.02 1.11 16 28 H 0.13 1.31 6.90 -2.91 -0.02 1.29 16 29 H 0.06 1.27 7.79 -2.39 -0.02 1.26 16 30 H 0.07 1.63 6.33 -2.38 -0.02 1.62 16 31 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 1.18 7.79 -2.39 -0.02 1.16 16 33 H 0.12 1.18 6.62 -2.39 -0.02 1.17 16 34 H 0.11 2.34 6.77 -2.91 -0.02 2.32 16 35 H 0.10 2.12 7.84 -2.91 -0.02 2.10 16 36 H 0.09 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.41 10.28 7.55 -92.71 -0.70 9.58 16 38 H 0.14 6.46 5.27 -4.01 -0.02 6.44 16 39 H 0.10 5.03 4.25 -2.91 -0.01 5.02 16 40 H 0.30 14.14 8.30 -92.70 -0.77 13.37 16 41 H 0.12 5.22 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -61.62 351.06 5.28 -56.34 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.29 Total: 27.13 kcal Atomic # 6 Polarization: -45.01 SS G_CDS: 4.70 Total: -40.31 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -1.29 Total: -64.67 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.04 Total: -21.47 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.69 Total: 45.31 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.08 Total: -2.33 kcal Total: -61.62 5.28 -56.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452643892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.097 kcal (2) G-P(sol) polarization free energy of solvation -61.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds