Wall clock time and date at job start Tue Mar 31 2020 12:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47041 * 2 1 4 4 C 1.50698 * 109.46809 * 239.99970 * 2 1 3 5 5 H 1.08004 * 120.00411 * 239.99807 * 4 2 1 6 6 C 1.37885 * 119.99980 * 60.00612 * 4 2 1 7 7 N 1.31516 * 119.99978 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00101 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46965 * 89.99538 * 8 6 4 10 10 H 1.48496 * 109.47012 * 209.99680 * 8 6 4 11 11 H 1.48505 * 109.47229 * 329.99844 * 8 6 4 12 12 C 1.52998 * 109.47070 * 120.00386 * 2 1 3 13 13 N 1.46507 * 109.47193 * 299.99789 * 12 2 1 14 14 C 1.34774 * 120.00161 * 180.02562 * 13 12 2 15 15 O 1.21567 * 119.99730 * 0.02562 * 14 13 12 16 16 C 1.47742 * 119.99766 * 179.97438 * 14 13 12 17 17 C 1.41134 * 126.30402 * 180.02562 * 16 14 13 18 18 C 1.36980 * 105.41919 * 179.97438 * 17 16 14 19 19 C 1.47389 * 126.62995 * 179.97438 * 18 17 16 20 20 C 1.34981 * 125.27597 * 180.02562 * 19 18 17 21 21 C 1.37914 * 114.67071 * 180.30778 * 20 19 18 22 22 C 1.33637 * 115.08101 * 359.48768 * 21 20 19 23 23 S 1.75852 * 109.78613 * 0.48487 * 22 21 20 24 24 N 1.36512 * 106.73689 * 0.23825 * 18 17 16 25 25 H 0.97000 * 125.02887 * 179.75488 * 24 18 17 26 26 N 1.28447 * 109.95261 * 359.58697 * 24 18 17 27 27 H 1.09002 * 109.46881 * 300.00075 * 1 2 3 28 28 H 1.09002 * 109.46921 * 59.99588 * 1 2 3 29 29 H 1.08999 * 109.47515 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46974 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47468 * 299.99748 * 3 2 1 32 32 H 1.09000 * 109.47089 * 60.00684 * 3 2 1 33 33 H 0.96994 * 120.00465 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46967 * 179.97438 * 12 2 1 35 35 H 1.08999 * 109.47083 * 59.99574 * 12 2 1 36 36 H 0.97002 * 119.99302 * 359.97438 * 13 12 2 37 37 H 1.08006 * 127.29267 * 359.97438 * 17 16 14 38 38 H 1.08002 * 122.66119 * 0.03267 * 20 19 18 39 39 H 1.07998 * 122.45699 * 179.70914 * 21 20 19 40 40 H 1.08004 * 125.10627 * 180.21338 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.3446 -2.1614 -4.4124 10 1 2.4871 -0.1400 -5.1120 11 1 3.6307 -1.7566 -3.7121 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4455 14 6 1.8777 -0.4910 3.6695 15 8 2.5773 -1.4789 3.7810 16 6 1.3857 0.2058 4.8758 17 6 1.6442 -0.1579 6.2148 18 6 0.9880 0.7714 6.9778 19 6 0.9473 0.8302 8.4499 20 6 0.2902 1.7599 9.1751 21 6 0.4047 1.6108 10.5414 22 6 1.1373 0.5659 10.9379 23 16 1.7482 -0.2997 9.5342 24 7 0.3742 1.6291 6.1111 25 1 -0.1689 2.3896 6.3713 26 7 0.6248 1.2823 4.9000 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 0.7082 1.1611 -3.4843 34 1 3.1300 -0.7217 1.2489 35 1 1.6766 -1.7490 1.2491 36 1 0.9944 0.7582 2.3564 37 1 2.2344 -0.9923 6.5639 38 1 -0.2763 2.5596 8.7214 39 1 -0.0664 2.2868 11.2396 40 1 1.3294 0.2962 11.9659 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457984812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:45 Heat of formation + Delta-G solvation = 44.768377 kcal Electronic energy + Delta-G solvation = -23247.377194 eV Core-core repulsion = 19768.466731 eV Total energy + Delta-G solvation = -3478.910463 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.69510 -40.55278 -38.65131 -38.10723 -35.06027 -33.43800 -33.04391 -32.47070 -29.28697 -27.62266 -27.56902 -27.06125 -25.40284 -24.45063 -22.64503 -21.48007 -20.69932 -20.42779 -19.28888 -18.46849 -17.71826 -17.38078 -16.99741 -16.64699 -16.47961 -16.09727 -15.95390 -15.06711 -14.88114 -14.74745 -14.50200 -14.22276 -14.03983 -13.98235 -13.56094 -13.20225 -13.20172 -13.09315 -12.68760 -12.58703 -12.25604 -12.12776 -12.09293 -11.71851 -11.48785 -11.43272 -11.10637 -11.07418 -10.69968 -10.59479 -10.38787 -9.96411 -9.49932 -9.16945 -8.00637 -6.16515 -0.44673 0.44491 0.45901 1.02952 1.11994 1.44341 1.46703 1.55356 1.78745 1.93277 2.24304 2.30819 2.49550 3.22795 3.24122 3.41616 3.94522 4.21803 4.22530 4.41770 4.45007 4.51097 4.58208 4.68599 4.71288 4.97670 5.02822 5.05915 5.10770 5.14112 5.19286 5.29712 5.32986 5.46839 5.54221 5.66562 5.68503 5.88470 6.13421 6.20916 6.43497 6.48253 6.76260 6.87242 7.16914 7.50850 8.98656 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.041501 B = 0.002257 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.521509 B =12402.687965 C =12886.147176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.526 4.526 5 H 0.048 0.952 6 C 0.026 3.974 7 N -0.900 5.900 8 Si 0.948 3.052 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.275 1.275 12 C 0.145 3.855 13 N -0.696 5.696 14 C 0.591 3.409 15 O -0.575 6.575 16 C -0.023 4.023 17 C -0.179 4.179 18 C 0.099 3.901 19 C -0.159 4.159 20 C -0.114 4.114 21 C -0.141 4.141 22 C -0.203 4.203 23 S 0.140 5.860 24 N -0.352 5.352 25 H 0.464 0.536 26 N -0.249 5.249 27 H 0.031 0.969 28 H 0.064 0.936 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.260 0.740 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.411 0.589 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.171 0.829 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.787 5.363 28.614 29.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.564 4.564 5 H 0.066 0.934 6 C -0.174 4.174 7 N -0.539 5.539 8 Si 0.775 3.225 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.200 1.200 12 C 0.022 3.978 13 N -0.346 5.346 14 C 0.376 3.624 15 O -0.454 6.454 16 C -0.182 4.182 17 C -0.208 4.208 18 C -0.028 4.028 19 C -0.278 4.278 20 C -0.147 4.147 21 C -0.170 4.170 22 C -0.339 4.339 23 S 0.404 5.596 24 N -0.071 5.071 25 H 0.313 0.687 26 N -0.087 5.087 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.248 0.752 37 H 0.182 0.818 38 H 0.180 0.820 39 H 0.189 0.811 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.968 4.213 27.570 28.048 hybrid contribution -0.580 0.804 -0.476 1.100 sum -3.549 5.017 27.094 27.782 Atomic orbital electron populations 1.21679 0.97237 0.98749 1.00228 1.18367 0.93213 0.93034 0.90362 1.21676 0.98047 0.97939 1.00224 1.21251 1.31702 1.12174 0.91317 0.93385 1.25494 0.95186 0.95615 1.01083 1.69916 1.37045 1.23338 1.23606 0.85712 0.78678 0.78408 0.79717 1.20487 1.20896 1.19962 1.21424 0.97469 0.95317 0.83635 1.46028 1.51963 1.31698 1.04949 1.17262 0.79667 0.83048 0.82392 1.90736 1.40126 1.27563 1.86953 1.21590 1.04587 0.97284 0.94700 1.21819 1.05867 1.02706 0.90424 1.18919 1.00417 0.94032 0.89395 1.21929 1.09655 1.04409 0.91779 1.20674 1.00460 0.99452 0.94158 1.20331 1.01677 0.99730 0.95293 1.26281 1.04273 1.00227 1.03110 1.84601 1.49982 1.29056 0.95938 1.43546 1.37795 1.24442 1.01310 0.68661 1.73487 1.16619 1.14545 1.04061 0.94992 0.91707 0.96080 0.96070 0.91710 0.94990 0.93037 0.93582 0.93565 0.75206 0.81832 0.82050 0.81124 0.78877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.08 71.98 0.58 -5.06 16 2 C 0.05 2.45 0.50 -52.93 -0.03 2.42 16 3 C -0.12 -5.64 8.08 71.98 0.58 -5.06 16 4 C -0.53 -28.29 8.01 25.60 0.21 -28.09 16 5 H 0.05 2.62 7.74 -2.91 -0.02 2.59 16 6 C 0.03 1.38 5.15 84.66 0.44 1.82 16 7 N -0.90 -48.85 9.35 21.45 0.20 -48.65 16 8 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 C 0.14 6.48 4.50 86.38 0.39 6.87 16 13 N -0.70 -27.19 4.96 -466.06 -2.31 -29.50 16 14 C 0.59 23.09 7.83 86.76 0.68 23.77 16 15 O -0.58 -25.84 16.91 -3.93 -0.07 -25.91 16 16 C -0.02 -0.74 7.11 42.37 0.30 -0.44 16 17 C -0.18 -4.91 10.57 22.69 0.24 -4.67 16 18 C 0.10 2.07 7.08 40.53 0.29 2.36 16 19 C -0.16 -2.54 6.42 23.93 0.15 -2.39 16 20 C -0.11 -1.21 10.08 21.44 0.22 -1.00 16 21 C -0.14 -1.15 10.16 21.15 0.21 -0.94 16 22 C -0.20 -1.80 11.22 66.78 0.75 -1.05 16 23 S 0.14 2.00 23.11 -56.49 -1.31 0.69 16 24 N -0.35 -6.73 6.88 -48.72 -0.34 -7.07 16 25 H 0.46 4.80 8.81 -220.00 -1.94 2.87 16 26 N -0.25 -6.78 11.88 -48.37 -0.57 -7.35 16 27 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 28 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 29 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 32 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 33 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 34 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.41 14.93 5.88 -92.71 -0.54 14.39 16 37 H 0.16 4.36 8.06 -2.91 -0.02 4.33 16 38 H 0.16 0.85 7.90 -2.91 -0.02 0.83 16 39 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 40 H 0.19 0.67 8.06 -2.91 -0.02 0.65 16 Total: -1.00 -66.59 349.99 1.25 -65.34 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -1.39 Total: 18.70 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 5.01 Total: -11.46 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -3.02 Total: -92.56 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.07 Total: -25.91 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -1.31 Total: 0.69 kcal Total: -66.59 1.25 -65.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457984812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.108 kcal (2) G-P(sol) polarization free energy of solvation -66.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds