Wall clock time and date at job start Tue Mar 31 2020 12:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47414 * 2 1 4 4 C 1.50704 * 109.46588 * 240.00564 * 2 1 3 5 5 H 1.08002 * 119.99983 * 241.34041 * 4 2 1 6 6 C 1.37874 * 120.00540 * 61.34875 * 4 2 1 7 7 N 1.31509 * 120.00641 * 193.97557 * 6 4 2 8 8 Si 1.86804 * 119.99614 * 13.97033 * 6 4 2 9 9 H 1.48503 * 109.46936 * 84.55634 * 8 6 4 10 10 H 1.48499 * 109.47020 * 204.55143 * 8 6 4 11 11 H 1.48502 * 109.47495 * 324.55238 * 8 6 4 12 12 C 1.52992 * 109.47623 * 120.00782 * 2 1 3 13 13 N 1.46504 * 109.47060 * 299.99584 * 12 2 1 14 14 C 1.34771 * 120.00445 * 179.97438 * 13 12 2 15 15 O 1.21728 * 120.00034 * 0.02562 * 14 13 12 16 16 C 1.46438 * 120.00081 * 179.97438 * 14 13 12 17 17 C 1.36657 * 125.17145 * 180.02562 * 16 14 13 18 18 C 1.36825 * 114.71535 * 179.97438 * 17 16 14 19 19 C 1.36454 * 114.78157 * 359.97438 * 18 17 16 20 20 C 1.47805 * 125.14962 * 179.97438 * 19 18 17 21 21 C 1.41060 * 126.06664 * 179.71589 * 20 19 18 22 22 C 1.35006 * 107.84048 * 179.82738 * 21 20 19 23 23 N 1.35087 * 108.03936 * 0.43594 * 22 21 20 24 24 H 0.96996 * 125.90917 * 179.70208 * 23 22 21 25 25 N 1.31836 * 126.07139 * 0.03179 * 20 19 18 26 26 S 1.75835 * 125.17537 * 359.69795 * 16 14 13 27 27 H 1.09003 * 109.46492 * 309.36084 * 1 2 3 28 28 H 1.08995 * 109.47309 * 69.35831 * 1 2 3 29 29 H 1.09001 * 109.47196 * 189.36481 * 1 2 3 30 30 H 1.08996 * 109.47125 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47372 * 300.00748 * 3 2 1 32 32 H 1.08999 * 109.46603 * 60.00358 * 3 2 1 33 33 H 0.96997 * 120.00492 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.47616 * 180.02562 * 12 2 1 35 35 H 1.08996 * 109.47612 * 59.99205 * 12 2 1 36 36 H 0.97006 * 119.99679 * 0.02562 * 13 12 2 37 37 H 1.07999 * 122.64583 * 359.97438 * 17 16 14 38 38 H 1.07997 * 122.61209 * 180.02562 * 18 17 16 39 39 H 1.08005 * 126.08075 * 0.02562 * 21 20 19 40 40 H 1.08002 * 125.98020 * 180.18851 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6351 -1.6009 -1.1318 6 6 1.7222 -0.2232 -2.4826 7 7 1.9155 -0.9723 -3.5461 8 14 1.0274 1.5008 -2.6683 9 1 2.1416 2.4818 -2.7083 10 1 0.2468 1.5868 -3.9286 11 1 0.1416 1.8044 -1.5157 12 6 2.0401 -0.7214 1.2490 13 7 1.5519 -0.0308 2.4454 14 6 1.8771 -0.4916 3.6694 15 8 2.5769 -1.4814 3.7810 16 6 1.3895 0.1989 4.8651 17 6 1.6539 -0.1747 6.1527 18 6 1.0893 0.6257 7.1081 19 6 0.3547 1.6671 6.6205 20 6 -0.3528 2.6692 7.4452 21 6 -1.1121 3.7555 6.9624 22 6 -1.5950 4.4288 8.0283 23 7 -1.1581 3.8101 9.1469 24 1 -1.3491 4.0812 10.0584 25 7 -0.3813 2.7097 8.7627 26 16 0.3817 1.6398 4.8625 27 1 -0.3632 0.6518 0.7946 28 1 -0.3634 0.3623 -0.9616 29 1 -0.3634 -1.0140 0.1672 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 1.6971 -0.6297 -4.4269 34 1 3.1300 -0.7210 1.2493 35 1 1.6767 -1.7490 1.2491 36 1 0.9939 0.7577 2.3564 37 1 2.2606 -1.0341 6.3971 38 1 1.2159 0.4477 8.1657 39 1 -1.2802 4.0026 5.9245 40 1 -2.2179 5.3103 7.9929 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458038995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:44 Heat of formation + Delta-G solvation = 84.976250 kcal Electronic energy + Delta-G solvation = -23320.685004 eV Core-core repulsion = 19843.518086 eV Total energy + Delta-G solvation = -3477.166919 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.47179 -39.55563 -37.60350 -36.57818 -33.40105 -32.72525 -31.53246 -30.45506 -29.29775 -26.53991 -26.35675 -25.24276 -24.53527 -22.26451 -21.26642 -20.99029 -19.48820 -18.73118 -18.54696 -17.75625 -16.14405 -16.02380 -15.61670 -15.19718 -15.00819 -14.92543 -14.69381 -14.11444 -13.98182 -13.51176 -13.46165 -12.98455 -12.80305 -12.73933 -12.61419 -12.40546 -12.21331 -12.05461 -11.34721 -11.34065 -11.01326 -10.46057 -10.45071 -10.34503 -10.18493 -10.08187 -9.80793 -9.30051 -9.14350 -8.79295 -8.70203 -8.67219 -8.48015 -8.38399 -6.15252 -4.12786 0.07008 1.15052 1.47620 1.64310 2.04286 2.44246 2.81282 3.23741 3.30714 3.38343 3.38975 3.49128 4.07890 4.35027 4.37991 4.79869 4.96156 5.14630 5.15286 5.21584 5.37697 5.44039 5.71740 5.82378 5.93207 6.02889 6.03650 6.13228 6.17453 6.33951 6.45547 6.50036 6.60568 6.67338 6.69855 6.77959 6.92383 7.13870 7.18973 7.40804 7.70303 7.79239 8.39718 8.46864 8.90008 9.48402 10.97736 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021316 B = 0.002944 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.222597 B = 9510.127119 C =10615.159654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.028 3.972 3 C -0.149 4.149 4 C -0.513 4.513 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.884 3.116 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.141 3.859 13 N -0.716 5.716 14 C 0.579 3.421 15 O -0.532 6.532 16 C -0.237 4.237 17 C -0.066 4.066 18 C -0.111 4.111 19 C -0.116 4.116 20 C 0.145 3.855 21 C -0.260 4.260 22 C 0.064 3.936 23 N -0.473 5.473 24 H 0.442 0.558 25 N -0.274 5.274 26 S 0.197 5.803 27 H 0.021 0.979 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.028 0.972 33 H 0.265 0.735 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.394 0.606 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.221 12.517 23.722 28.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 C -0.206 4.206 4 C -0.551 4.551 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.717 3.283 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.020 3.980 13 N -0.366 5.366 14 C 0.364 3.636 15 O -0.411 6.411 16 C -0.359 4.359 17 C -0.099 4.099 18 C -0.145 4.145 19 C -0.237 4.237 20 C -0.021 4.021 21 C -0.290 4.290 22 C -0.082 4.082 23 N -0.182 5.182 24 H 0.286 0.714 25 N -0.100 5.100 26 S 0.464 5.536 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.229 0.771 37 H 0.173 0.827 38 H 0.169 0.831 39 H 0.170 0.830 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.994 12.170 23.449 27.602 hybrid contribution -0.433 1.150 0.526 1.336 sum -8.428 13.319 23.974 28.691 Atomic orbital electron populations 1.22316 0.97800 0.99961 1.00035 1.18734 0.92577 0.92296 0.93723 1.22378 1.01344 0.98287 0.98605 1.20694 1.34136 1.12351 0.87896 0.90448 1.24966 0.94656 0.97293 0.95776 1.69944 1.48100 1.35911 0.98733 0.87312 0.79387 0.85596 0.76037 1.21302 1.23373 1.17460 1.21608 0.98875 0.95937 0.81626 1.46240 1.52656 1.31673 1.06046 1.16922 0.80679 0.83908 0.82081 1.90832 1.38154 1.25713 1.86380 1.24803 1.09572 1.02997 0.98501 1.20505 0.99160 1.00449 0.89755 1.20471 0.98331 0.94213 1.01444 1.22427 1.05561 0.99712 0.95995 1.19656 0.97471 0.94499 0.90470 1.21598 1.07719 0.99239 1.00446 1.22538 1.00048 0.99336 0.86299 1.46332 1.40738 1.22401 1.08758 0.71369 1.77655 1.14862 1.05103 1.12358 1.84024 1.46593 1.23263 0.99709 0.96006 0.92370 0.93249 0.92624 0.93905 0.95259 0.92532 0.91527 0.91419 0.77117 0.82650 0.83133 0.82965 0.80113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 7.53 37.16 0.28 -2.63 16 2 C 0.03 0.60 0.50 -155.66 -0.08 0.53 16 3 C -0.15 -3.01 7.52 37.16 0.28 -2.73 16 4 C -0.51 -13.65 8.62 -34.44 -0.30 -13.94 16 5 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 6 C 0.08 2.09 5.32 -17.82 -0.09 2.00 16 7 N -0.89 -26.45 13.96 55.43 0.77 -25.67 16 8 Si 0.88 20.85 22.79 -169.99 -3.87 16.98 16 9 H -0.29 -6.71 7.10 56.52 0.40 -6.31 16 10 H -0.31 -7.37 7.11 56.52 0.40 -6.97 16 11 H -0.25 -5.31 4.65 56.52 0.26 -5.04 16 12 C 0.14 2.83 4.49 -4.04 -0.02 2.82 16 13 N -0.72 -12.16 5.00 -61.70 -0.31 -12.47 16 14 C 0.58 9.96 7.78 -12.96 -0.10 9.86 16 15 O -0.53 -10.87 16.81 5.16 0.09 -10.78 16 16 C -0.24 -3.30 6.43 -36.85 -0.24 -3.54 16 17 C -0.07 -0.82 9.88 -40.66 -0.40 -1.23 16 18 C -0.11 -1.25 10.07 -40.74 -0.41 -1.66 16 19 C -0.12 -1.32 6.48 -36.31 -0.24 -1.56 16 20 C 0.14 1.56 7.08 -82.88 -0.59 0.98 16 21 C -0.26 -2.20 10.57 -39.66 -0.42 -2.62 16 22 C 0.06 0.37 11.96 -17.27 -0.21 0.17 16 23 N -0.47 -3.14 7.35 30.41 0.22 -2.92 16 24 H 0.44 1.36 8.96 -182.62 -1.64 -0.28 16 25 N -0.27 -2.90 12.69 33.36 0.42 -2.48 16 26 S 0.20 2.22 22.11 -107.50 -2.38 -0.16 16 27 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 28 H 0.06 1.25 4.30 -51.93 -0.22 1.02 16 29 H 0.05 0.99 8.12 -51.93 -0.42 0.56 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.91 2.25 -51.93 -0.12 0.79 16 32 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.39 5.95 5.34 -40.82 -0.22 5.73 16 37 H 0.16 1.83 8.03 -52.49 -0.42 1.41 16 38 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 39 H 0.15 1.09 8.06 -52.48 -0.42 0.66 16 40 H 0.18 0.29 8.06 -52.49 -0.42 -0.13 16 LS Contribution 339.69 15.07 5.12 5.12 Total: -1.00 -33.28 339.69 -8.45 -41.74 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.99 Total: 4.20 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.53 Total: -13.56 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 1.11 Total: -43.54 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -3.87 Total: 16.98 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.38 Total: -0.16 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.28 -8.45 -41.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458038995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.715 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds