Wall clock time and date at job start Tue Mar 31 2020 12:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47414 * 2 1 4 4 C 1.50704 * 109.46588 * 240.00564 * 2 1 3 5 5 H 1.08002 * 119.99983 * 241.34041 * 4 2 1 6 6 C 1.37874 * 120.00540 * 61.34875 * 4 2 1 7 7 N 1.31509 * 120.00641 * 193.97557 * 6 4 2 8 8 Si 1.86804 * 119.99614 * 13.97033 * 6 4 2 9 9 H 1.48503 * 109.46936 * 84.55634 * 8 6 4 10 10 H 1.48499 * 109.47020 * 204.55143 * 8 6 4 11 11 H 1.48502 * 109.47495 * 324.55238 * 8 6 4 12 12 C 1.52992 * 109.47623 * 120.00782 * 2 1 3 13 13 N 1.46504 * 109.47060 * 299.99584 * 12 2 1 14 14 C 1.34771 * 120.00445 * 179.97438 * 13 12 2 15 15 O 1.21728 * 120.00034 * 0.02562 * 14 13 12 16 16 C 1.46438 * 120.00081 * 179.97438 * 14 13 12 17 17 C 1.36657 * 125.17145 * 180.02562 * 16 14 13 18 18 C 1.36825 * 114.71535 * 179.97438 * 17 16 14 19 19 C 1.36454 * 114.78157 * 359.97438 * 18 17 16 20 20 C 1.47805 * 125.14962 * 179.97438 * 19 18 17 21 21 C 1.41060 * 126.06664 * 179.71589 * 20 19 18 22 22 C 1.35006 * 107.84048 * 179.82738 * 21 20 19 23 23 N 1.35087 * 108.03936 * 0.43594 * 22 21 20 24 24 H 0.96996 * 125.90917 * 179.70208 * 23 22 21 25 25 N 1.31836 * 126.07139 * 0.03179 * 20 19 18 26 26 S 1.75835 * 125.17537 * 359.69795 * 16 14 13 27 27 H 1.09003 * 109.46492 * 309.36084 * 1 2 3 28 28 H 1.08995 * 109.47309 * 69.35831 * 1 2 3 29 29 H 1.09001 * 109.47196 * 189.36481 * 1 2 3 30 30 H 1.08996 * 109.47125 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47372 * 300.00748 * 3 2 1 32 32 H 1.08999 * 109.46603 * 60.00358 * 3 2 1 33 33 H 0.96997 * 120.00492 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.47616 * 180.02562 * 12 2 1 35 35 H 1.08996 * 109.47612 * 59.99205 * 12 2 1 36 36 H 0.97006 * 119.99679 * 0.02562 * 13 12 2 37 37 H 1.07999 * 122.64583 * 359.97438 * 17 16 14 38 38 H 1.07997 * 122.61209 * 180.02562 * 18 17 16 39 39 H 1.08005 * 126.08075 * 0.02562 * 21 20 19 40 40 H 1.08002 * 125.98020 * 180.18851 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6351 -1.6009 -1.1318 6 6 1.7222 -0.2232 -2.4826 7 7 1.9155 -0.9723 -3.5461 8 14 1.0274 1.5008 -2.6683 9 1 2.1416 2.4818 -2.7083 10 1 0.2468 1.5868 -3.9286 11 1 0.1416 1.8044 -1.5157 12 6 2.0401 -0.7214 1.2490 13 7 1.5519 -0.0308 2.4454 14 6 1.8771 -0.4916 3.6694 15 8 2.5769 -1.4814 3.7810 16 6 1.3895 0.1989 4.8651 17 6 1.6539 -0.1747 6.1527 18 6 1.0893 0.6257 7.1081 19 6 0.3547 1.6671 6.6205 20 6 -0.3528 2.6692 7.4452 21 6 -1.1121 3.7555 6.9624 22 6 -1.5950 4.4288 8.0283 23 7 -1.1581 3.8101 9.1469 24 1 -1.3491 4.0812 10.0584 25 7 -0.3813 2.7097 8.7627 26 16 0.3817 1.6398 4.8625 27 1 -0.3632 0.6518 0.7946 28 1 -0.3634 0.3623 -0.9616 29 1 -0.3634 -1.0140 0.1672 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 1.6971 -0.6297 -4.4269 34 1 3.1300 -0.7210 1.2493 35 1 1.6767 -1.7490 1.2491 36 1 0.9939 0.7577 2.3564 37 1 2.2606 -1.0341 6.3971 38 1 1.2159 0.4477 8.1657 39 1 -1.2802 4.0026 5.9245 40 1 -2.2179 5.3103 7.9929 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458038995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:43 Heat of formation + Delta-G solvation = 60.900057 kcal Electronic energy + Delta-G solvation = -23321.729026 eV Core-core repulsion = 19843.518086 eV Total energy + Delta-G solvation = -3478.210941 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.05226 -40.94244 -38.79353 -38.03137 -35.07353 -33.61834 -33.29974 -31.01616 -30.28275 -28.04968 -27.80051 -27.03952 -25.86731 -23.02298 -22.32473 -21.81015 -21.07669 -19.88524 -19.27652 -18.76062 -18.03640 -17.18318 -17.04528 -16.51680 -16.45924 -15.90487 -15.74550 -15.02682 -14.96827 -14.74646 -14.64402 -14.51009 -14.33706 -14.03192 -13.84585 -13.75192 -13.54260 -13.22405 -12.95907 -12.38358 -12.23730 -12.11026 -11.95152 -11.76886 -11.74363 -11.27293 -11.19707 -11.03190 -10.60724 -10.39212 -10.16304 -9.87502 -9.61847 -9.28395 -8.28274 -6.30304 -0.87577 0.25153 0.70761 0.82804 1.26551 1.38883 1.39916 1.53125 1.97027 1.98860 2.12912 2.19749 2.36812 3.07587 3.42470 3.76122 3.83995 4.06738 4.22262 4.31522 4.32304 4.40065 4.53881 4.73265 4.74721 4.80171 4.81552 4.84928 4.92682 5.02375 5.05296 5.10543 5.13628 5.27398 5.34931 5.46905 5.50171 5.71366 5.79041 6.30208 6.37860 6.46335 6.56965 6.73808 7.09310 7.34533 8.88772 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021316 B = 0.002944 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.222597 B = 9510.127119 C =10615.159654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.027 3.973 3 C -0.150 4.150 4 C -0.517 4.517 5 H 0.029 0.971 6 C 0.017 3.983 7 N -0.946 5.946 8 Si 0.943 3.057 9 H -0.281 1.281 10 H -0.315 1.315 11 H -0.202 1.202 12 C 0.155 3.845 13 N -0.707 5.707 14 C 0.583 3.417 15 O -0.575 6.575 16 C -0.277 4.277 17 C -0.054 4.054 18 C -0.123 4.123 19 C -0.107 4.107 20 C 0.117 3.883 21 C -0.284 4.284 22 C 0.087 3.913 23 N -0.461 5.461 24 H 0.457 0.543 25 N -0.307 5.307 26 S 0.246 5.754 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.265 0.735 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.406 0.594 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.759 16.592 26.377 32.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.026 3.974 3 C -0.207 4.207 4 C -0.555 4.555 5 H 0.047 0.953 6 C -0.181 4.181 7 N -0.585 5.585 8 Si 0.772 3.228 9 H -0.208 1.208 10 H -0.244 1.244 11 H -0.126 1.126 12 C 0.032 3.968 13 N -0.358 5.358 14 C 0.370 3.630 15 O -0.457 6.457 16 C -0.398 4.398 17 C -0.088 4.088 18 C -0.155 4.155 19 C -0.228 4.228 20 C -0.047 4.047 21 C -0.314 4.314 22 C -0.060 4.060 23 N -0.172 5.172 24 H 0.304 0.696 25 N -0.134 5.134 26 S 0.514 5.486 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.244 0.756 37 H 0.172 0.828 38 H 0.180 0.820 39 H 0.181 0.819 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -10.549 16.269 26.155 32.558 hybrid contribution 0.334 -0.118 -0.114 0.372 sum -10.215 16.151 26.041 32.301 Atomic orbital electron populations 1.22251 0.96027 1.00791 1.01030 1.18668 0.93868 0.93155 0.91723 1.22324 1.01230 0.96786 1.00316 1.20987 1.32993 1.11127 0.90417 0.95259 1.25860 0.95372 1.01653 0.95177 1.70108 1.50648 1.38318 0.99420 0.86358 0.79503 0.79902 0.77049 1.20798 1.24437 1.12601 1.21168 0.97800 0.95202 0.82626 1.45956 1.52873 1.31863 1.05103 1.17283 0.79675 0.83310 0.82739 1.90805 1.40092 1.27717 1.87039 1.24439 1.12655 1.05443 0.97291 1.20607 0.98289 1.00215 0.89661 1.20518 0.98867 0.94364 1.01782 1.22739 1.04201 0.99329 0.96552 1.19771 0.98722 0.95409 0.90821 1.21898 1.08345 0.99204 1.01907 1.23233 0.98497 0.99428 0.84891 1.46425 1.39467 1.21259 1.10091 0.69567 1.77571 1.16323 1.07029 1.12502 1.83678 1.44900 1.20813 0.99217 0.91779 0.93252 0.93854 0.93211 0.94355 0.91053 0.92656 0.93228 0.93425 0.75645 0.82797 0.82012 0.81887 0.75520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 7.53 71.98 0.54 -4.90 16 2 C 0.03 1.15 0.50 -52.93 -0.03 1.12 16 3 C -0.15 -5.59 7.52 71.98 0.54 -5.05 16 4 C -0.52 -28.45 8.62 25.60 0.22 -28.23 16 5 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 6 C 0.02 0.95 5.32 84.65 0.45 1.40 16 7 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 8 Si 0.94 42.20 22.79 68.60 1.56 43.76 16 9 H -0.28 -12.31 7.10 99.48 0.71 -11.60 16 10 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16 11 H -0.20 -7.57 4.65 99.48 0.46 -7.11 16 12 C 0.16 6.30 4.49 86.38 0.39 6.69 16 13 N -0.71 -23.13 5.00 -467.32 -2.34 -25.47 16 14 C 0.58 19.89 7.78 86.38 0.67 20.56 16 15 O -0.57 -24.17 16.81 -4.44 -0.07 -24.24 16 16 C -0.28 -7.41 6.43 24.04 0.15 -7.25 16 17 C -0.05 -1.31 9.88 21.57 0.21 -1.10 16 18 C -0.12 -2.60 10.07 21.52 0.22 -2.38 16 19 C -0.11 -2.22 6.48 24.39 0.16 -2.06 16 20 C 0.12 2.24 7.08 42.37 0.30 2.54 16 21 C -0.28 -3.78 10.57 22.22 0.23 -3.55 16 22 C 0.09 0.61 11.96 83.45 1.00 1.61 16 23 N -0.46 -4.52 7.35 -57.69 -0.42 -4.95 16 24 H 0.46 1.21 8.96 -213.34 -1.91 -0.70 16 25 N -0.31 -5.78 12.69 -48.38 -0.61 -6.40 16 26 S 0.25 4.86 22.11 -56.49 -1.25 3.61 16 27 H 0.06 1.88 7.13 -2.39 -0.02 1.86 16 28 H 0.05 1.95 4.30 -2.39 -0.01 1.94 16 29 H 0.04 1.67 8.12 -2.39 -0.02 1.65 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.48 2.25 -2.39 -0.01 1.47 16 32 H 0.07 2.06 6.86 -2.39 -0.02 2.04 16 33 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.41 10.98 5.34 -92.70 -0.50 10.48 16 37 H 0.15 3.67 8.03 -2.91 -0.02 3.65 16 38 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 39 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 40 H 0.23 -0.66 8.06 -2.91 -0.02 -0.69 16 Total: -1.00 -76.87 339.69 0.68 -76.18 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -1.55 Total: 16.33 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 5.06 Total: -20.59 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -3.07 Total: -95.05 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.07 Total: -24.24 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.56 Total: 43.76 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -1.25 Total: 3.61 kcal Total: -76.87 0.68 -76.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458038995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.084 kcal (2) G-P(sol) polarization free energy of solvation -76.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds