Wall clock time and date at job start Tue Mar 31 2020 12:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.46870 * 2 1 4 4 C 1.50694 * 109.46823 * 239.99703 * 2 1 3 5 5 H 1.08001 * 119.99649 * 239.99474 * 4 2 1 6 6 C 1.37871 * 120.00259 * 60.00220 * 4 2 1 7 7 N 1.31514 * 119.99994 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00395 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46986 * 60.00041 * 8 6 4 10 10 H 1.48498 * 109.47594 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47239 * 300.00311 * 8 6 4 12 12 C 1.52997 * 109.46909 * 119.99607 * 2 1 3 13 13 N 1.46499 * 109.47551 * 299.99865 * 12 2 1 14 14 C 1.34777 * 120.00195 * 179.97438 * 13 12 2 15 15 O 1.21573 * 119.99941 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99726 * 180.27548 * 14 13 12 17 17 C 1.38510 * 119.99655 * 179.72286 * 16 14 13 18 18 N 1.28795 * 124.81510 * 359.70644 * 17 16 14 19 19 C 1.34767 * 117.91005 * 179.76589 * 18 17 16 20 20 C 1.41119 * 128.74660 * 180.21384 * 19 18 17 21 21 C 1.37181 * 120.43639 * 180.36778 * 20 19 18 22 22 C 1.38731 * 120.60039 * 359.93632 * 21 20 19 23 23 C 1.37695 * 119.98616 * 0.02562 * 22 21 20 24 24 C 1.39284 * 120.19873 * 0.02562 * 23 22 21 25 25 S 1.75807 * 124.81147 * 179.97438 * 17 16 14 26 26 H 1.09007 * 109.47294 * 299.99959 * 1 2 3 27 27 H 1.08994 * 109.47483 * 60.00261 * 1 2 3 28 28 H 1.09002 * 109.46630 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47560 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.47339 * 299.99893 * 3 2 1 31 31 H 1.08998 * 109.47717 * 59.99985 * 3 2 1 32 32 H 0.96996 * 120.00389 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47059 * 180.02562 * 12 2 1 34 34 H 1.09002 * 109.47542 * 60.00476 * 12 2 1 35 35 H 0.97000 * 120.00069 * 0.02562 * 13 12 2 36 36 H 0.97000 * 120.00483 * 359.73178 * 16 14 13 37 37 H 1.08001 * 119.78710 * 0.32921 * 20 19 18 38 38 H 1.07993 * 119.70309 * 179.97438 * 21 20 19 39 39 H 1.08005 * 120.01110 * 180.02562 * 22 21 20 40 40 H 1.08004 * 119.89846 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1197 -4.0078 9 1 1.8279 -2.5200 -4.0080 10 1 1.8269 -0.4202 -5.2204 11 1 3.8073 -1.1193 -4.0077 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8769 -0.4912 3.6696 15 8 2.5758 -1.4797 3.7811 16 7 1.4231 0.1410 4.7699 17 6 1.7525 -0.3359 6.0280 18 7 2.4793 -1.3750 6.2534 19 6 2.7169 -1.7124 7.5363 20 6 3.4760 -2.7901 8.0401 21 6 3.6005 -2.9800 9.3930 22 6 2.9843 -2.1164 10.2869 23 6 2.2392 -1.0575 9.8184 24 6 2.1010 -0.8500 8.4481 25 16 1.2323 0.3876 7.5435 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 0.7082 1.1607 -3.4844 33 1 3.1300 -0.7208 1.2495 34 1 1.6768 -1.7489 1.2494 35 1 0.9938 0.7579 2.3565 36 1 0.8656 0.9298 4.6810 37 1 3.9617 -3.4703 7.3561 38 1 4.1839 -3.8089 9.7655 39 1 3.0889 -2.2746 11.3502 40 1 1.7604 -0.3859 10.5157 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459225646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:55 Heat of formation + Delta-G solvation = 17.715095 kcal Electronic energy + Delta-G solvation = -23402.460534 eV Core-core repulsion = 19922.376953 eV Total energy + Delta-G solvation = -3480.083581 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.81293 -40.83919 -38.60708 -37.63151 -35.67291 -34.98490 -32.70182 -31.98490 -30.19157 -27.58514 -27.55452 -27.04541 -25.36808 -23.85440 -23.41066 -21.38934 -20.66226 -20.46607 -19.13193 -18.31586 -17.80240 -17.07029 -17.04957 -16.59117 -16.26706 -16.14267 -15.74831 -15.42227 -15.20646 -14.75434 -14.74376 -14.69475 -14.01790 -13.47734 -13.39535 -13.13252 -13.09770 -12.80168 -12.67413 -12.62651 -12.24998 -12.14029 -11.90627 -11.69382 -11.49204 -11.39768 -11.22288 -11.11736 -10.72167 -10.43381 -10.39748 -10.05793 -9.18174 -9.08916 -8.02395 -6.17703 -0.56345 -0.29026 0.17957 0.49673 1.30737 1.43481 1.44364 1.46767 1.53009 2.11444 2.45249 2.75725 2.78922 3.21466 3.46052 3.72266 4.11152 4.33692 4.35058 4.38373 4.50610 4.53499 4.70646 4.88671 4.95417 4.96829 5.06067 5.07611 5.20277 5.21322 5.29822 5.32020 5.45031 5.52809 5.55478 5.67956 5.68060 5.84963 6.16104 6.21318 6.43484 6.56526 6.85788 6.96335 7.38830 7.49809 8.96374 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.032893 B = 0.002444 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.044186 B =11453.044598 C =12113.003103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.053 3.947 3 C -0.122 4.122 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.168 3.832 13 N -0.711 5.711 14 C 0.693 3.307 15 O -0.580 6.580 16 N -0.629 5.629 17 C 0.338 3.662 18 N -0.520 5.520 19 C 0.074 3.926 20 C -0.099 4.099 21 C -0.092 4.092 22 C -0.101 4.101 23 C -0.069 4.069 24 C -0.203 4.203 25 S 0.118 5.882 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.261 0.739 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.410 0.590 36 H 0.439 0.561 37 H 0.123 0.877 38 H 0.165 0.835 39 H 0.175 0.825 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.162 1.553 26.697 26.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.044 3.956 13 N -0.368 5.368 14 C 0.391 3.609 15 O -0.455 6.455 16 N -0.284 5.284 17 C -0.039 4.039 18 N -0.241 5.241 19 C -0.045 4.045 20 C -0.120 4.120 21 C -0.112 4.112 22 C -0.122 4.122 23 C -0.092 4.092 24 C -0.322 4.322 25 S 0.369 5.631 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.248 0.752 36 H 0.280 0.720 37 H 0.141 0.859 38 H 0.183 0.817 39 H 0.193 0.807 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.059 1.400 26.238 26.297 hybrid contribution 0.389 -0.540 -1.539 1.676 sum -0.670 0.860 24.699 24.723 Atomic orbital electron populations 1.21686 0.96932 0.98750 1.00577 1.18358 0.93391 0.93100 0.89903 1.21684 0.97970 0.97714 1.00577 1.21222 1.31818 1.12227 0.91533 0.93776 1.25419 0.95151 0.95602 1.00867 1.69886 1.36851 1.23203 1.23689 0.85840 0.78609 0.78818 0.79673 1.20355 1.20764 1.20342 1.21239 0.96973 0.94814 0.82622 1.45185 1.55312 1.33226 1.03075 1.16171 0.80822 0.83015 0.80940 1.91012 1.41607 1.27475 1.85377 1.41967 1.53686 1.32344 1.00400 1.23826 0.96190 0.93200 0.90637 1.66408 1.19588 1.16558 1.21574 1.19337 1.01303 0.98885 0.84998 1.20939 0.98405 0.95589 0.97078 1.21366 0.98754 1.00278 0.90846 1.21594 0.95595 0.93148 1.01829 1.20744 0.98931 0.99122 0.90358 1.23906 1.07004 1.01008 1.00264 1.84417 1.54306 1.29735 0.94676 0.94163 0.91784 0.96343 0.96337 0.91789 0.94160 0.92984 0.94282 0.94284 0.75217 0.72016 0.85859 0.81708 0.80729 0.82401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 2 C 0.05 2.43 0.50 -52.93 -0.03 2.40 16 3 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 4 C -0.53 -27.91 8.01 25.60 0.21 -27.70 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 6 C 0.03 1.55 5.15 84.65 0.44 1.99 16 7 N -0.90 -47.39 9.35 21.44 0.20 -47.19 16 8 Si 0.94 42.63 29.54 68.60 2.03 44.66 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.17 7.15 4.50 86.38 0.39 7.53 16 13 N -0.71 -24.33 4.96 -478.56 -2.37 -26.71 16 14 C 0.69 25.11 8.52 179.05 1.53 26.63 16 15 O -0.58 -26.95 14.96 -3.95 -0.06 -27.01 16 16 N -0.63 -17.06 5.39 -324.68 -1.75 -18.81 16 17 C 0.34 9.93 8.19 179.61 1.47 11.40 16 18 N -0.52 -18.62 8.63 -188.89 -1.63 -20.25 16 19 C 0.07 2.18 6.94 39.78 0.28 2.45 16 20 C -0.10 -2.39 10.10 22.73 0.23 -2.16 16 21 C -0.09 -1.37 9.99 22.14 0.22 -1.15 16 22 C -0.10 -1.16 10.05 22.26 0.22 -0.93 16 23 C -0.07 -1.02 10.06 22.39 0.23 -0.80 16 24 C -0.20 -4.58 6.52 22.90 0.15 -4.43 16 25 S 0.12 2.38 23.39 -56.49 -1.32 1.06 16 26 H 0.04 1.42 6.86 -2.38 -0.02 1.41 16 27 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 3.09 6.07 -2.38 -0.01 3.08 16 31 H 0.04 1.42 6.86 -2.39 -0.02 1.41 16 32 H 0.26 13.30 8.31 -92.71 -0.77 12.53 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.41 11.46 6.18 -92.71 -0.57 10.88 16 36 H 0.44 7.66 8.83 -92.71 -0.82 6.84 16 37 H 0.12 3.10 8.06 -2.91 -0.02 3.08 16 38 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.18 0.59 8.06 -2.91 -0.02 0.56 16 40 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -72.05 343.95 1.28 -70.77 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -0.30 Total: 17.63 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 6.49 Total: 5.84 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -5.55 Total: -112.95 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.06 Total: -27.01 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -1.32 Total: 1.06 kcal Total: -72.05 1.28 -70.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459225646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.484 kcal (2) G-P(sol) polarization free energy of solvation -72.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds