Wall clock time and date at job start Tue Mar 31 2020 12:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46909 * 2 1 4 4 C 1.50701 * 109.47304 * 240.00325 * 2 1 3 5 5 H 1.07995 * 120.00368 * 239.99471 * 4 2 1 6 6 C 1.37882 * 119.99792 * 59.99708 * 4 2 1 7 7 N 1.31513 * 120.00120 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99878 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47104 * 60.00069 * 8 6 4 10 10 H 1.48499 * 109.47514 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47380 * 300.00321 * 8 6 4 12 12 C 1.52998 * 109.47364 * 120.00533 * 2 1 3 13 13 N 1.46509 * 109.46874 * 299.99845 * 12 2 1 14 14 C 1.34768 * 119.99851 * 179.97438 * 13 12 2 15 15 O 1.21589 * 120.00510 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99830 * 180.02562 * 14 13 12 17 17 C 1.40144 * 120.00200 * 184.59420 * 16 14 13 18 18 C 1.39366 * 119.76030 * 324.86956 * 17 16 14 19 19 C 1.37539 * 120.01382 * 179.97438 * 18 17 16 20 20 C 1.39348 * 120.20490 * 0.02562 * 19 18 17 21 21 S 1.76122 * 131.57092 * 180.02562 * 20 19 18 22 22 C 1.70638 * 90.83648 * 179.97438 * 21 20 19 23 23 N 1.27945 * 111.52445 * 359.97438 * 22 21 20 24 24 C 1.34686 * 117.83233 * 359.97438 * 23 22 21 25 25 C 1.37752 * 119.76680 * 144.86221 * 17 16 14 26 26 H 1.09000 * 109.47529 * 299.99374 * 1 2 3 27 27 H 1.08999 * 109.47326 * 59.99788 * 1 2 3 28 28 H 1.09001 * 109.46881 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46948 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47300 * 300.00228 * 3 2 1 31 31 H 1.09000 * 109.46981 * 60.00256 * 3 2 1 32 32 H 0.97002 * 119.99973 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47006 * 180.02562 * 12 2 1 34 34 H 1.08989 * 109.47204 * 60.00196 * 12 2 1 35 35 H 0.97005 * 119.99528 * 0.02562 * 13 12 2 36 36 H 0.97000 * 119.99916 * 4.59243 * 16 14 13 37 37 H 1.08005 * 119.99360 * 359.97438 * 18 17 16 38 38 H 1.07994 * 119.89436 * 180.27089 * 19 18 17 39 39 H 1.08004 * 124.24292 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.86958 * 0.02597 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5883 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3225 -1.1192 -4.0080 9 1 1.8281 -2.5196 -4.0083 10 1 1.8279 -0.4189 -5.2205 11 1 3.8074 -1.1186 -4.0078 12 6 2.0400 -0.7213 1.2491 13 7 1.5517 -0.0308 2.4454 14 6 1.8769 -0.4916 3.6694 15 8 2.5759 -1.4802 3.7810 16 7 1.4272 0.1434 4.7699 17 6 1.8428 -0.2770 6.0405 18 6 2.0583 -1.6320 6.2847 19 6 2.4668 -2.0504 7.5296 20 6 2.6661 -1.1229 8.5504 21 16 3.1769 -1.3193 10.2244 22 6 3.0721 0.3646 10.4801 23 7 2.6974 0.9777 9.4215 24 6 2.4549 0.2408 8.3205 25 6 2.0356 0.6521 7.0392 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 0.7088 1.1616 -3.4844 33 1 3.1300 -0.7209 1.2493 34 1 1.6768 -1.7489 1.2490 35 1 0.9937 0.7577 2.3564 36 1 0.8159 0.8915 4.6825 37 1 1.9045 -2.3539 5.4961 38 1 2.6375 -3.1004 7.7155 39 1 3.2941 0.8519 11.4181 40 1 1.8655 1.6997 6.8393 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459364717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:52 Heat of formation + Delta-G solvation = 30.945437 kcal Electronic energy + Delta-G solvation = -23447.668067 eV Core-core repulsion = 19968.158196 eV Total energy + Delta-G solvation = -3479.509871 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.87810 -39.81140 -37.43100 -36.28665 -34.35597 -33.36261 -31.06146 -30.63148 -29.12664 -25.77803 -25.73645 -25.28317 -24.82743 -23.06173 -22.08920 -20.52268 -18.93151 -18.65324 -18.45795 -17.38786 -16.23672 -15.92761 -15.84359 -15.21187 -14.86389 -14.78354 -14.69838 -14.20995 -14.00226 -13.69136 -13.39581 -12.98925 -12.92476 -12.42290 -12.24193 -12.10113 -11.45769 -11.26654 -11.24038 -10.90469 -10.76123 -10.69214 -10.43307 -10.25051 -9.93699 -9.90049 -9.75659 -9.68674 -9.39173 -8.85345 -8.67783 -8.50416 -8.38635 -7.98041 -6.05873 -4.16150 0.23461 0.91636 1.05581 1.50378 2.18236 2.69485 3.23720 3.28044 3.32560 3.36234 3.62702 3.82948 4.32223 4.40866 4.49384 4.90089 4.97971 5.07637 5.21067 5.21292 5.56872 5.82011 5.91769 6.03020 6.16273 6.20545 6.27321 6.43750 6.69186 6.73872 6.76644 6.81179 6.93238 6.96837 7.09509 7.31085 7.33860 7.50619 7.65743 7.96205 8.05558 8.19595 8.34348 8.72892 8.84622 9.49857 10.95549 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.040612 B = 0.002228 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.281273 B =12561.604432 C =12918.306697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.148 3.852 13 N -0.724 5.724 14 C 0.698 3.302 15 O -0.580 6.580 16 N -0.692 5.692 17 C 0.197 3.803 18 C -0.093 4.093 19 C -0.058 4.058 20 C -0.194 4.194 21 S 0.085 5.915 22 C 0.064 3.936 23 N -0.464 5.464 24 C 0.094 3.906 25 C -0.105 4.105 26 H 0.005 0.995 27 H 0.086 0.914 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.005 0.995 32 H 0.261 0.739 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.397 0.603 36 H 0.408 0.592 37 H 0.158 0.842 38 H 0.134 0.866 39 H 0.202 0.798 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.007 -0.405 22.871 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.026 3.974 13 N -0.377 5.377 14 C 0.398 3.602 15 O -0.458 6.458 16 N -0.340 5.340 17 C 0.098 3.902 18 C -0.116 4.116 19 C -0.081 4.081 20 C -0.313 4.313 21 S 0.338 5.662 22 C -0.241 4.241 23 N -0.177 5.177 24 C -0.025 4.025 25 C -0.130 4.130 26 H 0.024 0.976 27 H 0.104 0.896 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.024 0.976 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.232 0.768 36 H 0.244 0.756 37 H 0.175 0.825 38 H 0.152 0.848 39 H 0.219 0.781 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.801 -1.373 23.375 23.429 hybrid contribution -0.443 0.779 -1.630 1.860 sum 0.358 -0.595 21.745 21.756 Atomic orbital electron populations 1.21835 0.97721 0.99236 1.00074 1.18368 0.92830 0.92797 0.90437 1.21838 0.98663 0.98315 1.00073 1.20923 1.31645 1.12184 0.89798 0.92413 1.24878 0.94825 0.94912 0.98877 1.69788 1.36563 1.22679 1.23402 0.86618 0.79259 0.79781 0.82115 1.20253 1.21332 1.20262 1.21699 0.98138 0.95539 0.82046 1.45569 1.54954 1.32872 1.04325 1.16033 0.80512 0.83089 0.80549 1.90889 1.42570 1.26853 1.85498 1.42761 1.50493 1.37505 1.03246 1.17143 0.96751 0.92361 0.83948 1.21469 0.98453 0.95118 0.96568 1.20226 0.98791 0.98517 0.90597 1.23741 1.10907 0.98071 0.98554 1.83921 1.68190 1.09471 1.04661 1.28042 1.00576 0.94692 1.00813 1.66198 1.14522 1.38316 0.98673 1.18759 1.02849 0.87630 0.93299 1.20131 1.03478 0.99451 0.89945 0.97566 0.89565 0.95361 0.95372 0.89553 0.97567 0.92906 0.92590 0.92561 0.76820 0.75621 0.82493 0.84776 0.78125 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.08 37.15 0.30 -2.53 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 4 C -0.51 -12.93 8.01 -34.44 -0.28 -13.20 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.13 9.35 55.43 0.52 -22.61 16 8 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.15 3.00 4.50 -4.04 -0.02 2.98 16 13 N -0.72 -12.01 4.96 -65.22 -0.32 -12.34 16 14 C 0.70 11.44 8.41 -86.92 -0.73 10.71 16 15 O -0.58 -11.39 13.76 5.29 0.07 -11.32 16 16 N -0.69 -8.68 5.34 -14.32 -0.08 -8.76 16 17 C 0.20 2.54 6.28 -83.81 -0.53 2.01 16 18 C -0.09 -1.22 8.67 -39.42 -0.34 -1.56 16 19 C -0.06 -0.67 10.05 -39.42 -0.40 -1.07 16 20 C -0.19 -2.26 6.55 -38.55 -0.25 -2.52 16 21 S 0.09 0.73 23.17 -107.50 -2.49 -1.76 16 22 C 0.06 0.55 12.10 51.14 0.62 1.17 16 23 N -0.46 -5.52 10.57 -12.95 -0.14 -5.66 16 24 C 0.09 1.19 6.99 -84.96 -0.59 0.60 16 25 C -0.11 -1.27 10.00 -38.73 -0.39 -1.66 16 26 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 27 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 31 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 32 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.19 8.14 -51.94 -0.42 0.77 16 35 H 0.40 5.82 6.18 -40.82 -0.25 5.57 16 36 H 0.41 3.81 8.83 -40.82 -0.36 3.45 16 37 H 0.16 2.27 6.21 -52.48 -0.33 1.95 16 38 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.20 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 341.26 15.07 5.14 5.14 Total: -1.00 -29.59 341.26 -9.57 -39.16 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -4.78 Total: 7.59 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -2.47 Total: -4.82 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.02 Total: -49.37 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.07 Total: -11.32 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.49 Total: -1.76 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.59 -9.57 -39.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459364717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.105 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds