Wall clock time and date at job start Tue Mar 31 2020 12:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46909 * 2 1 4 4 C 1.50701 * 109.47304 * 240.00325 * 2 1 3 5 5 H 1.07995 * 120.00368 * 239.99471 * 4 2 1 6 6 C 1.37882 * 119.99792 * 59.99708 * 4 2 1 7 7 N 1.31513 * 120.00120 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99878 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47104 * 60.00069 * 8 6 4 10 10 H 1.48499 * 109.47514 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47380 * 300.00321 * 8 6 4 12 12 C 1.52998 * 109.47364 * 120.00533 * 2 1 3 13 13 N 1.46509 * 109.46874 * 299.99845 * 12 2 1 14 14 C 1.34768 * 119.99851 * 179.97438 * 13 12 2 15 15 O 1.21589 * 120.00510 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99830 * 180.02562 * 14 13 12 17 17 C 1.40144 * 120.00200 * 184.59420 * 16 14 13 18 18 C 1.39366 * 119.76030 * 324.86956 * 17 16 14 19 19 C 1.37539 * 120.01382 * 179.97438 * 18 17 16 20 20 C 1.39348 * 120.20490 * 0.02562 * 19 18 17 21 21 S 1.76122 * 131.57092 * 180.02562 * 20 19 18 22 22 C 1.70638 * 90.83648 * 179.97438 * 21 20 19 23 23 N 1.27945 * 111.52445 * 359.97438 * 22 21 20 24 24 C 1.34686 * 117.83233 * 359.97438 * 23 22 21 25 25 C 1.37752 * 119.76680 * 144.86221 * 17 16 14 26 26 H 1.09000 * 109.47529 * 299.99374 * 1 2 3 27 27 H 1.08999 * 109.47326 * 59.99788 * 1 2 3 28 28 H 1.09001 * 109.46881 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46948 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47300 * 300.00228 * 3 2 1 31 31 H 1.09000 * 109.46981 * 60.00256 * 3 2 1 32 32 H 0.97002 * 119.99973 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47006 * 180.02562 * 12 2 1 34 34 H 1.08989 * 109.47204 * 60.00196 * 12 2 1 35 35 H 0.97005 * 119.99528 * 0.02562 * 13 12 2 36 36 H 0.97000 * 119.99916 * 4.59243 * 16 14 13 37 37 H 1.08005 * 119.99360 * 359.97438 * 18 17 16 38 38 H 1.07994 * 119.89436 * 180.27089 * 19 18 17 39 39 H 1.08004 * 124.24292 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.86958 * 0.02597 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5883 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3225 -1.1192 -4.0080 9 1 1.8281 -2.5196 -4.0083 10 1 1.8279 -0.4189 -5.2205 11 1 3.8074 -1.1186 -4.0078 12 6 2.0400 -0.7213 1.2491 13 7 1.5517 -0.0308 2.4454 14 6 1.8769 -0.4916 3.6694 15 8 2.5759 -1.4802 3.7810 16 7 1.4272 0.1434 4.7699 17 6 1.8428 -0.2770 6.0405 18 6 2.0583 -1.6320 6.2847 19 6 2.4668 -2.0504 7.5296 20 6 2.6661 -1.1229 8.5504 21 16 3.1769 -1.3193 10.2244 22 6 3.0721 0.3646 10.4801 23 7 2.6974 0.9777 9.4215 24 6 2.4549 0.2408 8.3205 25 6 2.0356 0.6521 7.0392 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 0.7088 1.1616 -3.4844 33 1 3.1300 -0.7209 1.2493 34 1 1.6768 -1.7489 1.2490 35 1 0.9937 0.7577 2.3564 36 1 0.8159 0.8915 4.6825 37 1 1.9045 -2.3539 5.4961 38 1 2.6375 -3.1004 7.7155 39 1 3.2941 0.8519 11.4181 40 1 1.8655 1.6997 6.8393 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459364717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:52 Heat of formation + Delta-G solvation = 12.664265 kcal Electronic energy + Delta-G solvation = -23448.460798 eV Core-core repulsion = 19968.158196 eV Total energy + Delta-G solvation = -3480.302602 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.91314 -40.89488 -38.68906 -37.68566 -35.48920 -34.95156 -32.74528 -31.60265 -30.12050 -27.54641 -27.45074 -26.73937 -25.94489 -23.98465 -23.19890 -21.65599 -20.60715 -19.80908 -19.44698 -18.37132 -17.78623 -17.22234 -16.86164 -16.64857 -16.34785 -16.02531 -15.75019 -15.32892 -14.95611 -14.84012 -14.71429 -14.68708 -14.10024 -13.99990 -13.39434 -13.22682 -13.08811 -13.00953 -12.66321 -12.61655 -12.24327 -12.12716 -12.08263 -11.67222 -11.47148 -11.30967 -11.14186 -10.70174 -10.69786 -10.63101 -10.38456 -10.00213 -9.47829 -8.86499 -8.01285 -6.16657 -0.57571 -0.00754 0.30841 0.75087 1.33594 1.45144 1.46203 1.50905 1.55771 2.02357 2.46664 2.65223 3.02635 3.22672 3.28956 3.60711 4.04328 4.16292 4.21240 4.36987 4.42858 4.54357 4.70278 4.72680 4.91628 4.99250 5.05495 5.07389 5.09837 5.17443 5.21774 5.24223 5.37376 5.58460 5.68680 5.68908 5.75948 5.93144 6.16997 6.23170 6.44616 6.56660 6.87620 6.97582 7.45304 7.51038 8.97364 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.040612 B = 0.002228 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.281273 B =12561.604432 C =12918.306697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.122 4.122 4 C -0.528 4.528 5 H 0.046 0.954 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.278 1.278 12 C 0.167 3.833 13 N -0.717 5.717 14 C 0.700 3.300 15 O -0.614 6.614 16 N -0.674 5.674 17 C 0.183 3.817 18 C -0.114 4.114 19 C -0.054 4.054 20 C -0.218 4.218 21 S 0.134 5.866 22 C 0.075 3.925 23 N -0.499 5.499 24 C 0.080 3.920 25 C -0.106 4.106 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.019 0.981 29 H 0.017 0.983 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.260 0.740 33 H 0.039 0.961 34 H 0.042 0.958 35 H 0.408 0.592 36 H 0.425 0.575 37 H 0.139 0.861 38 H 0.153 0.847 39 H 0.243 0.757 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 0.083 25.347 25.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.180 4.180 4 C -0.566 4.566 5 H 0.064 0.936 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.203 1.203 12 C 0.043 3.957 13 N -0.372 5.372 14 C 0.400 3.600 15 O -0.495 6.495 16 N -0.323 5.323 17 C 0.085 3.915 18 C -0.138 4.138 19 C -0.076 4.076 20 C -0.337 4.337 21 S 0.388 5.612 22 C -0.229 4.229 23 N -0.212 5.212 24 C -0.040 4.040 25 C -0.131 4.131 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.245 0.755 36 H 0.263 0.737 37 H 0.157 0.843 38 H 0.171 0.829 39 H 0.259 0.741 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.847 -0.858 25.893 25.921 hybrid contribution -0.419 0.603 -2.177 2.298 sum 0.428 -0.255 23.716 23.721 Atomic orbital electron populations 1.21676 0.97032 0.98777 1.00429 1.18358 0.93313 0.92988 0.90211 1.21685 0.97934 0.97926 1.00420 1.21240 1.31704 1.12212 0.91477 0.93575 1.25441 0.95189 0.95602 1.00948 1.69898 1.36983 1.23248 1.23631 0.85839 0.78603 0.78850 0.79642 1.20214 1.20974 1.20332 1.21206 0.96953 0.94887 0.82690 1.45223 1.55278 1.33089 1.03575 1.16059 0.80118 0.82762 0.81016 1.90875 1.44084 1.28446 1.86052 1.42438 1.50205 1.37400 1.02255 1.17207 0.97820 0.92547 0.83958 1.21384 1.00246 0.95109 0.97029 1.20394 0.97674 0.99556 0.90026 1.24061 1.11155 0.97952 1.00549 1.83788 1.66801 1.08951 1.01687 1.28834 0.97694 0.95074 1.01285 1.66266 1.16767 1.38954 0.99240 1.19035 1.02803 0.88302 0.93837 1.20228 1.03143 0.99908 0.89790 0.94304 0.92000 0.96176 0.96352 0.91952 0.94357 0.93065 0.94264 0.93937 0.75453 0.73658 0.84340 0.82912 0.74102 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 8.08 71.98 0.58 -4.61 16 2 C 0.05 2.32 0.50 -52.93 -0.03 2.30 16 3 C -0.12 -5.26 8.08 71.98 0.58 -4.67 16 4 C -0.53 -27.30 8.01 25.60 0.21 -27.10 16 5 H 0.05 2.43 7.74 -2.91 -0.02 2.41 16 6 C 0.03 1.45 5.15 84.66 0.44 1.89 16 7 N -0.90 -47.26 9.35 21.45 0.20 -47.06 16 8 Si 0.94 42.12 29.54 68.60 2.03 44.14 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 C 0.17 6.79 4.50 86.38 0.39 7.18 16 13 N -0.72 -23.21 4.96 -478.54 -2.37 -25.59 16 14 C 0.70 22.73 8.41 179.06 1.51 24.24 16 15 O -0.61 -24.53 13.76 -4.00 -0.05 -24.58 16 16 N -0.67 -16.36 5.34 -317.48 -1.70 -18.05 16 17 C 0.18 4.65 6.28 37.97 0.24 4.89 16 18 C -0.11 -3.04 8.67 22.38 0.19 -2.85 16 19 C -0.05 -1.20 10.05 22.37 0.22 -0.98 16 20 C -0.22 -4.76 6.55 22.94 0.15 -4.61 16 21 S 0.13 1.93 23.17 -56.49 -1.31 0.62 16 22 C 0.08 1.05 12.10 130.81 1.58 2.63 16 23 N -0.50 -10.78 10.57 -194.77 -2.06 -12.84 16 24 C 0.08 1.92 6.99 39.77 0.28 2.20 16 25 C -0.11 -2.47 10.00 22.82 0.23 -2.25 16 26 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 27 H 0.06 2.98 6.07 -2.39 -0.01 2.96 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 3.02 6.07 -2.39 -0.01 3.00 16 31 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 32 H 0.26 13.24 8.31 -92.71 -0.77 12.47 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 35 H 0.41 11.17 6.18 -92.70 -0.57 10.60 16 36 H 0.42 7.24 8.83 -92.71 -0.82 6.42 16 37 H 0.14 4.18 6.21 -2.91 -0.02 4.16 16 38 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 39 H 0.24 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -64.60 341.26 1.01 -63.59 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -0.29 Total: 21.50 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 6.57 Total: -1.74 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -5.93 Total: -103.54 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.05 Total: -24.58 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.31 Total: 0.62 kcal Total: -64.60 1.01 -63.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459364717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.253 kcal (2) G-P(sol) polarization free energy of solvation -64.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds