Wall clock time and date at job start Tue Mar 31 2020 12:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47094 * 2 1 4 4 C 1.50700 * 109.47099 * 239.99842 * 2 1 3 5 5 N 1.28016 * 124.77966 * 59.69640 * 4 2 1 6 6 C 1.34750 * 118.12103 * 179.81087 * 5 4 2 7 7 C 1.41192 * 128.80400 * 180.15293 * 6 5 4 8 8 C 1.36012 * 120.64902 * 180.28555 * 7 6 5 9 9 C 1.39366 * 120.71086 * 0.04725 * 8 7 6 10 10 N 1.40064 * 120.08066 * 180.02562 * 9 8 7 11 11 C 1.34776 * 120.00209 * 213.29001 * 10 9 8 12 12 O 1.21597 * 119.99502 * 5.31184 * 11 10 9 13 13 N 1.34774 * 120.00162 * 185.30921 * 11 10 9 14 14 C 1.46501 * 119.99722 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46989 * 180.02562 * 14 13 11 16 16 H 1.08007 * 119.99960 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00262 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99936 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00152 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47130 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46725 * 119.99828 * 19 17 15 22 22 H 1.48496 * 109.47207 * 239.99925 * 19 17 15 23 23 C 1.38215 * 119.83950 * 359.97150 * 9 8 7 24 24 C 1.39347 * 119.97372 * 0.02562 * 23 9 8 25 25 S 1.75824 * 124.78287 * 240.00194 * 4 2 1 26 26 H 1.08997 * 109.47045 * 299.99681 * 1 2 3 27 27 H 1.09004 * 109.46728 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47178 * 60.00387 * 1 2 3 29 29 H 1.09003 * 109.47307 * 120.00427 * 2 1 3 30 30 H 1.08997 * 109.46914 * 60.00239 * 3 2 1 31 31 H 1.08998 * 109.46776 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.46792 * 299.99850 * 3 2 1 33 33 H 1.07996 * 119.67194 * 0.30475 * 7 6 5 34 34 H 1.07993 * 119.64288 * 180.02562 * 8 7 6 35 35 H 0.97006 * 119.99887 * 33.27998 * 10 9 8 36 36 H 0.96998 * 119.99693 * 0.02562 * 13 11 10 37 37 H 1.08993 * 109.47580 * 300.00626 * 14 13 11 38 38 H 1.09005 * 109.47029 * 60.00511 * 14 13 11 39 39 H 0.96987 * 120.00184 * 179.97438 * 18 17 15 40 40 H 1.08006 * 120.01211 * 179.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7755 -0.3570 -2.4337 6 6 2.2992 -1.0893 -3.4363 7 6 2.1666 -0.9044 -4.8298 8 6 2.7686 -1.7563 -5.7026 9 6 3.5278 -2.8297 -5.2405 10 7 4.1425 -3.6986 -6.1511 11 6 4.2814 -5.0044 -5.8479 12 8 3.7885 -5.4476 -4.8285 13 7 4.9665 -5.8190 -6.6747 14 6 5.1180 -7.2383 -6.3448 15 6 5.9197 -7.9217 -7.4225 16 1 6.2799 -7.3554 -8.2688 17 6 6.1923 -9.2700 -7.3288 18 7 5.7532 -9.9596 -6.2986 19 14 7.1854 -10.1172 -8.6650 20 1 7.5591 -9.1273 -9.7069 21 1 8.4161 -10.7001 -8.0726 22 1 6.3711 -11.1975 -9.2773 23 6 3.6737 -3.0342 -3.8813 24 6 3.0618 -2.1682 -2.9774 25 16 3.0474 -2.1460 -1.2156 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.5818 -0.0783 -5.2062 34 1 2.6568 -1.5994 -6.7652 35 1 4.4680 -3.3604 -7.0000 36 1 5.3599 -5.4652 -7.4877 37 1 5.6350 -7.3364 -5.3904 38 1 4.1340 -7.7019 -6.2743 39 1 5.9447 -10.9081 -6.2328 40 1 4.2612 -3.8655 -3.5201 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488382903.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:54 Heat of formation + Delta-G solvation = -9.409357 kcal Electronic energy + Delta-G solvation = -22905.391791 eV Core-core repulsion = 19424.132006 eV Total energy + Delta-G solvation = -3481.259786 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.90277 -40.88175 -38.64247 -36.48505 -36.07239 -34.84988 -34.20426 -32.14255 -30.10780 -28.74899 -28.03576 -26.01388 -25.00888 -24.37480 -23.19523 -21.92155 -20.75220 -19.95927 -19.60948 -18.62421 -18.05534 -16.96268 -16.88293 -16.60525 -16.28576 -16.01446 -15.87524 -15.43683 -15.10119 -15.04367 -14.67897 -14.26000 -14.12862 -14.07531 -14.01733 -13.59071 -13.18584 -12.91045 -12.84829 -12.75543 -12.59062 -12.24341 -12.16063 -12.03163 -11.91813 -11.47834 -11.42730 -11.18003 -11.06923 -10.84416 -10.63736 -9.96089 -9.37948 -8.88693 -8.30689 -6.47204 -0.66151 0.08116 0.17858 0.65639 1.16385 1.42853 1.44468 1.56399 1.63363 2.04645 2.37319 2.64873 2.79071 3.04889 3.31176 3.55171 3.82211 3.99931 4.05211 4.14004 4.16544 4.26406 4.51126 4.62641 4.83694 4.84532 4.95870 4.96308 4.98493 5.04506 5.12026 5.15755 5.22069 5.25606 5.35445 5.40826 5.42008 5.58406 5.73837 5.79991 6.10490 6.53417 6.63930 7.10562 7.22953 7.51877 8.81762 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.031706 B = 0.002289 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.907657 B =12229.792207 C =12827.457479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.020 4.020 3 C -0.135 4.135 4 C 0.133 3.867 5 N -0.466 5.466 6 C 0.041 3.959 7 C -0.039 4.039 8 C -0.114 4.114 9 C 0.185 3.815 10 N -0.667 5.667 11 C 0.690 3.310 12 O -0.627 6.627 13 N -0.711 5.711 14 C 0.284 3.716 15 C -0.554 4.554 16 H 0.087 0.913 17 C 0.003 3.997 18 N -0.931 5.931 19 Si 0.986 3.014 20 H -0.251 1.251 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.109 4.109 24 C -0.165 4.165 25 S 0.020 5.980 26 H 0.093 0.907 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.170 0.830 34 H 0.182 0.818 35 H 0.430 0.570 36 H 0.409 0.591 37 H -0.012 1.012 38 H -0.011 1.011 39 H 0.269 0.731 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.310 25.468 6.174 27.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.043 4.043 3 C -0.194 4.194 4 C -0.154 4.154 5 N -0.177 5.177 6 C -0.078 4.078 7 C -0.060 4.060 8 C -0.137 4.137 9 C 0.085 3.915 10 N -0.317 5.317 11 C 0.390 3.610 12 O -0.507 6.507 13 N -0.365 5.365 14 C 0.161 3.839 15 C -0.592 4.592 16 H 0.105 0.895 17 C -0.197 4.197 18 N -0.569 5.569 19 Si 0.810 3.190 20 H -0.175 1.175 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.135 4.135 24 C -0.284 4.284 25 S 0.276 5.724 26 H 0.112 0.888 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.188 0.812 34 H 0.199 0.801 35 H 0.270 0.730 36 H 0.246 0.754 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.078 0.922 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.571 24.631 7.801 26.923 hybrid contribution 0.850 -1.034 -1.764 2.214 sum -6.722 23.597 6.037 25.267 Atomic orbital electron populations 1.21812 0.91700 1.02330 1.03727 1.20212 0.97628 0.96572 0.89846 1.21800 1.01058 0.92831 1.03705 1.28228 0.96202 0.94271 0.96655 1.66061 1.23041 1.29782 0.98820 1.19563 0.99820 0.92886 0.95543 1.20563 0.98162 0.99738 0.87579 1.20793 0.96432 0.93940 1.02529 1.17528 0.94688 0.91428 0.87855 1.42428 1.62160 1.05356 1.21729 1.16280 0.79708 0.81396 0.83583 1.90899 1.54851 1.76061 1.28916 1.45310 1.55424 1.10135 1.25591 1.18490 0.94763 0.75214 0.95444 1.21625 1.34974 0.94844 1.07732 0.89507 1.26074 0.96922 0.98072 0.98619 1.70143 1.46337 1.08981 1.31459 0.85084 0.77531 0.78288 0.78139 1.17476 1.20596 1.20524 1.20180 1.02167 0.99075 0.92118 1.23497 1.05989 1.01669 0.97237 1.85092 1.54746 1.32053 1.00462 0.88814 0.93178 0.92376 0.87362 0.88899 0.92799 0.92366 0.81247 0.80111 0.73038 0.75445 0.99392 0.99313 0.92230 0.87151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.16 71.98 0.66 -1.09 16 2 C -0.02 -0.29 3.37 -11.54 -0.04 -0.33 16 3 C -0.14 -1.60 9.17 71.98 0.66 -0.94 16 4 C 0.13 3.05 6.07 88.66 0.54 3.59 16 5 N -0.47 -12.00 10.53 -178.41 -1.88 -13.88 16 6 C 0.04 1.14 6.95 39.81 0.28 1.42 16 7 C -0.04 -0.84 10.04 22.48 0.23 -0.61 16 8 C -0.11 -2.33 9.86 22.02 0.22 -2.11 16 9 C 0.18 5.34 6.28 38.09 0.24 5.58 16 10 N -0.67 -18.99 5.36 -317.19 -1.70 -20.69 16 11 C 0.69 28.10 8.30 179.06 1.49 29.59 16 12 O -0.63 -31.98 14.03 -4.02 -0.06 -32.04 16 13 N -0.71 -29.44 5.55 -482.29 -2.68 -32.12 16 14 C 0.28 15.42 5.43 85.63 0.46 15.89 16 15 C -0.55 -29.56 9.28 25.60 0.24 -29.32 16 16 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 17 C 0.00 0.15 5.46 84.65 0.46 0.62 16 18 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 19 Si 0.99 41.80 29.54 68.60 2.03 43.83 16 20 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 21 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 23 C -0.11 -3.82 8.68 22.53 0.20 -3.63 16 24 C -0.16 -5.26 6.53 22.93 0.15 -5.11 16 25 S 0.02 0.56 23.37 -56.49 -1.32 -0.76 16 26 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.17 2.48 8.06 -2.91 -0.02 2.45 16 34 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.43 8.06 8.84 -92.70 -0.82 7.24 16 36 H 0.41 13.45 8.34 -92.71 -0.77 12.68 16 37 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 39 H 0.27 15.03 8.31 -92.72 -0.77 14.26 16 40 H 0.11 4.63 6.40 -2.91 -0.02 4.61 16 Total: -1.00 -77.15 356.43 -0.05 -77.21 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -0.50 Total: 20.49 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 5.77 Total: 13.52 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -5.97 Total: -122.25 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.06 Total: -32.04 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 0.56 SS G_CDS: -1.32 Total: -0.76 kcal Total: -77.15 -0.05 -77.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488382903.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.797 kcal (2) G-P(sol) polarization free energy of solvation -77.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds