Wall clock time and date at job start Tue Mar 31 2020 12:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33425 * 120.00318 * 2 1 4 4 C 1.46319 * 120.00419 * 179.97438 * 3 2 1 5 5 C 1.35230 * 119.99818 * 112.85861 * 4 3 2 6 6 C 1.46190 * 120.00348 * 352.11610 * 5 4 3 7 7 O 1.21738 * 119.99566 * 0.56866 * 6 5 4 8 8 N 1.34776 * 119.99931 * 180.56555 * 6 5 4 9 9 C 1.38956 * 119.99815 * 184.95242 * 8 6 5 10 10 C 1.38720 * 120.27654 * 333.20852 * 9 8 6 11 11 C 1.38165 * 120.03883 * 179.70063 * 10 9 8 12 12 C 1.39017 * 120.60957 * 0.60556 * 11 10 9 13 13 Cl 1.73603 * 119.71538 * 179.69779 * 12 11 10 14 14 C 1.36532 * 120.56421 * 359.67224 * 12 11 10 15 15 C 1.40730 * 119.93998 * 0.02562 * 14 12 11 16 16 C 1.41030 * 120.29857 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99724 * 150.19175 * 16 15 14 18 18 C 1.39964 * 120.00276 * 330.18767 * 16 15 14 19 19 N 1.30848 * 119.99868 * 1.89724 * 18 16 15 20 20 Si 1.86795 * 120.00157 * 181.89131 * 18 16 15 21 21 H 1.48501 * 109.46976 * 60.00573 * 20 18 16 22 22 H 1.48501 * 109.47177 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47392 * 300.00054 * 20 18 16 24 24 C 1.50706 * 119.99911 * 359.97438 * 3 2 1 25 25 C 1.53000 * 109.47030 * 94.08450 * 24 3 2 26 26 H 1.08994 * 109.46973 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47099 * 300.00826 * 1 2 3 28 28 H 1.09004 * 109.46582 * 60.00321 * 1 2 3 29 29 H 1.08001 * 119.99722 * 179.97438 * 2 1 3 30 30 H 1.07995 * 119.99833 * 292.86323 * 4 3 2 31 31 H 1.08003 * 119.99911 * 172.11418 * 5 4 3 32 32 H 0.96997 * 120.00199 * 4.94529 * 8 6 5 33 33 H 1.07999 * 119.97667 * 359.97438 * 10 9 8 34 34 H 1.08001 * 119.69515 * 180.29776 * 11 10 9 35 35 H 1.08000 * 120.03116 * 180.02562 * 14 12 11 36 36 H 0.97000 * 120.00034 * 179.97438 * 19 18 16 37 37 H 1.08996 * 109.47048 * 334.08371 * 24 3 2 38 38 H 1.08999 * 109.47238 * 214.08531 * 24 3 2 39 39 H 1.08996 * 109.47269 * 60.00057 * 25 24 3 40 40 H 1.08994 * 109.47107 * 180.02562 * 25 24 3 41 41 H 1.08999 * 109.47176 * 300.00119 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1742 1.1555 0.0000 4 6 3.6374 1.1555 0.0006 5 6 4.3139 1.6102 -1.0784 6 6 3.5938 1.9394 -2.3074 7 8 2.3839 1.8140 -2.3560 8 7 4.2695 2.3817 -3.3864 9 6 3.5774 2.7922 -4.5193 10 6 2.3219 2.2724 -4.7985 11 6 1.6355 2.6885 -5.9230 12 6 2.1962 3.6187 -6.7907 13 17 1.3165 4.1194 -8.2011 14 6 3.4326 4.1422 -6.5430 15 6 4.1498 3.7395 -5.4010 16 6 5.4278 4.2749 -5.1380 17 1 5.7718 4.3757 -4.1193 18 6 6.2503 4.6756 -6.1973 19 7 5.8192 4.5880 -7.4296 20 14 7.9633 5.3355 -5.8517 21 1 8.7613 4.2978 -5.1506 22 1 8.6257 5.6882 -7.1331 23 1 7.8644 6.5456 -4.9967 24 6 1.4207 2.4606 -0.0006 25 6 1.2542 2.9540 1.4381 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 2.0470 -0.9353 0.0004 30 1 4.1770 0.7923 0.8627 31 1 5.3863 1.7302 -1.0323 32 1 5.2388 2.4137 -3.3721 33 1 1.8790 1.5452 -4.1341 34 1 0.6563 2.2838 -6.1325 35 1 3.8599 4.8646 -7.2227 36 1 6.3890 4.8661 -8.1637 37 1 0.4388 2.3131 -0.4501 38 1 1.9764 3.2007 -0.5765 39 1 2.2361 3.1016 1.8876 40 1 0.7088 3.8977 1.4377 41 1 0.6985 2.2139 2.0140 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493117228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:03 Heat of formation + Delta-G solvation = 0.768535 kcal Electronic energy + Delta-G solvation = -24043.081219 eV Core-core repulsion = 20527.926322 eV Total energy + Delta-G solvation = -3515.154897 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.80052 -37.80554 -36.60186 -35.38396 -33.80161 -33.55335 -32.35294 -31.10427 -29.75455 -28.54883 -26.73817 -25.42758 -23.31108 -22.88529 -21.48704 -20.40735 -19.42820 -17.88856 -17.44736 -16.60297 -16.40048 -15.41790 -15.01761 -14.63732 -14.40334 -14.25795 -13.93494 -13.41684 -13.32944 -13.05937 -12.86410 -12.78705 -12.45052 -12.27930 -12.14341 -11.91961 -11.63667 -11.51457 -11.48374 -11.23687 -10.89194 -10.72589 -10.58405 -10.48043 -10.37616 -10.20858 -9.71864 -9.44142 -9.37214 -9.24039 -8.79722 -8.14545 -7.51689 -6.98091 -6.69116 -4.56756 1.31380 2.39524 2.56869 2.81783 2.98330 2.99274 3.08593 3.37529 3.80225 3.82030 3.99456 4.50841 4.87077 5.06316 5.25712 5.34372 5.39344 5.43812 5.50773 5.56591 5.70334 5.79278 5.85162 6.07883 6.10970 6.14519 6.26581 6.34542 6.43156 6.45657 6.46487 6.77171 6.85664 6.87931 7.04699 7.05135 7.09154 7.36719 7.55577 7.75006 7.91667 7.94198 8.29676 8.39722 8.67038 8.71233 8.94996 10.07751 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.011685 B = 0.004190 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.754643 B = 6680.981743 C = 8528.313342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.166 4.166 3 C -0.070 4.070 4 C -0.042 4.042 5 C -0.200 4.200 6 C 0.521 3.479 7 O -0.523 6.523 8 N -0.632 5.632 9 C 0.027 3.973 10 C -0.091 4.091 11 C -0.214 4.214 12 C -0.018 4.018 13 Cl -0.127 7.127 14 C -0.141 4.141 15 C 0.099 3.901 16 C -0.460 4.460 17 H 0.078 0.922 18 C 0.072 3.928 19 N -0.797 5.797 20 Si 0.917 3.083 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.265 1.265 24 C -0.070 4.070 25 C -0.147 4.147 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.405 0.595 33 H 0.134 0.866 34 H 0.100 0.900 35 H 0.150 0.850 36 H 0.283 0.717 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.542 -4.425 11.718 12.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.184 4.184 3 C -0.070 4.070 4 C -0.061 4.061 5 C -0.221 4.221 6 C 0.311 3.689 7 O -0.403 6.403 8 N -0.273 5.273 9 C -0.067 4.067 10 C -0.112 4.112 11 C -0.234 4.234 12 C -0.044 4.044 13 Cl -0.099 7.099 14 C -0.162 4.162 15 C 0.095 3.905 16 C -0.490 4.490 17 H 0.096 0.904 18 C -0.145 4.145 19 N -0.423 5.423 20 Si 0.741 3.259 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.107 4.107 25 C -0.205 4.205 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.240 0.760 33 H 0.151 0.849 34 H 0.119 0.881 35 H 0.167 0.833 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.353 -4.403 11.327 12.378 hybrid contribution 1.480 0.320 -0.235 1.532 sum -0.873 -4.084 11.092 11.852 Atomic orbital electron populations 1.20733 0.93259 1.01380 1.01759 1.22943 0.95758 0.96353 1.03343 1.20216 0.91959 0.95550 0.99300 1.22359 0.93940 0.93227 0.96613 1.23148 1.00270 1.04652 0.94021 1.18348 0.87613 0.79109 0.83823 1.90727 1.13719 1.52740 1.83082 1.42813 1.10188 1.61542 1.12743 1.17878 0.95708 1.01204 0.91951 1.20960 0.94190 0.99859 0.96158 1.20249 1.00952 1.04611 0.97613 1.20582 0.94193 1.00884 0.88773 1.98252 1.77231 1.91238 1.43175 1.21267 0.91273 1.02928 1.00725 1.17300 0.92887 0.89189 0.91136 1.19281 0.98770 1.36883 0.94055 0.90402 1.25912 1.00793 0.93268 0.94561 1.69705 1.37187 1.35590 0.99771 0.86218 0.80942 0.79985 0.78730 1.18973 1.20208 1.18923 1.20450 1.00292 0.94158 0.95815 1.21772 1.01293 1.00531 0.96884 0.92850 0.92223 0.91363 0.87992 0.85341 0.85467 0.75953 0.84851 0.88148 0.83293 0.90582 0.90916 0.91143 0.93067 0.92819 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 8.86 36.01 0.32 -0.99 16 2 C -0.17 -2.11 9.99 -35.99 -0.36 -2.47 16 3 C -0.07 -0.94 2.91 -103.05 -0.30 -1.24 16 4 C -0.04 -0.51 9.65 -37.41 -0.36 -0.87 16 5 C -0.20 -2.70 10.01 -37.46 -0.38 -3.08 16 6 C 0.52 9.31 7.18 -13.07 -0.09 9.22 16 7 O -0.52 -10.39 9.49 5.15 0.05 -10.34 16 8 N -0.63 -12.22 5.06 -10.79 -0.05 -12.28 16 9 C 0.03 0.63 6.47 -83.21 -0.54 0.09 16 10 C -0.09 -2.11 8.77 -39.43 -0.35 -2.45 16 11 C -0.21 -4.90 9.81 -39.32 -0.39 -5.29 16 12 C -0.02 -0.42 6.28 -39.91 -0.25 -0.67 16 13 Cl -0.13 -2.66 28.93 -51.86 -1.50 -4.16 16 14 C -0.14 -3.56 8.41 -39.26 -0.33 -3.89 16 15 C 0.10 2.46 5.61 -106.65 -0.60 1.86 16 16 C -0.46 -10.95 8.32 -37.88 -0.31 -11.27 16 17 H 0.08 1.73 7.28 -52.49 -0.38 1.35 16 18 C 0.07 1.66 5.42 -17.32 -0.09 1.57 16 19 N -0.80 -19.36 10.37 55.55 0.58 -18.79 16 20 Si 0.92 17.35 29.56 -169.99 -5.02 12.33 16 21 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 22 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 23 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 24 C -0.07 -0.97 4.47 -27.88 -0.12 -1.09 16 25 C -0.15 -1.62 9.89 37.16 0.37 -1.25 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.61 7.72 -51.93 -0.40 0.21 16 28 H 0.07 0.88 7.42 -51.93 -0.39 0.49 16 29 H 0.10 1.21 8.05 -52.49 -0.42 0.79 16 30 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 31 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.40 7.05 7.65 -40.82 -0.31 6.73 16 33 H 0.13 3.04 5.57 -52.49 -0.29 2.74 16 34 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 35 H 0.15 3.93 5.81 -52.49 -0.31 3.62 16 36 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 37 H 0.07 1.06 6.36 -51.93 -0.33 0.72 16 38 H 0.07 1.15 6.90 -51.93 -0.36 0.79 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.51 7.76 -51.93 -0.40 0.11 16 LS Contribution 354.20 15.07 5.34 5.34 Total: -1.00 -26.68 354.20 -9.67 -36.35 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -5.26 Total: 13.38 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -3.78 Total: -21.83 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.52 Total: -31.06 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.05 Total: -10.34 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.02 Total: 12.33 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -1.50 Total: -4.16 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -26.68 -9.67 -36.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493117228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.114 kcal (2) G-P(sol) polarization free energy of solvation -26.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds