Wall clock time and date at job start Tue Mar 31 2020 12:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33425 * 120.00318 * 2 1 4 4 C 1.46319 * 120.00419 * 179.97438 * 3 2 1 5 5 C 1.35230 * 119.99818 * 112.85861 * 4 3 2 6 6 C 1.46190 * 120.00348 * 352.11610 * 5 4 3 7 7 O 1.21738 * 119.99566 * 0.56866 * 6 5 4 8 8 N 1.34776 * 119.99931 * 180.56555 * 6 5 4 9 9 C 1.38956 * 119.99815 * 184.95242 * 8 6 5 10 10 C 1.38720 * 120.27654 * 333.20852 * 9 8 6 11 11 C 1.38165 * 120.03883 * 179.70063 * 10 9 8 12 12 C 1.39017 * 120.60957 * 0.60556 * 11 10 9 13 13 Cl 1.73603 * 119.71538 * 179.69779 * 12 11 10 14 14 C 1.36532 * 120.56421 * 359.67224 * 12 11 10 15 15 C 1.40730 * 119.93998 * 0.02562 * 14 12 11 16 16 C 1.41030 * 120.29857 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99724 * 150.19175 * 16 15 14 18 18 C 1.39964 * 120.00276 * 330.18767 * 16 15 14 19 19 N 1.30848 * 119.99868 * 1.89724 * 18 16 15 20 20 Si 1.86795 * 120.00157 * 181.89131 * 18 16 15 21 21 H 1.48501 * 109.46976 * 60.00573 * 20 18 16 22 22 H 1.48501 * 109.47177 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47392 * 300.00054 * 20 18 16 24 24 C 1.50706 * 119.99911 * 359.97438 * 3 2 1 25 25 C 1.53000 * 109.47030 * 94.08450 * 24 3 2 26 26 H 1.08994 * 109.46973 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47099 * 300.00826 * 1 2 3 28 28 H 1.09004 * 109.46582 * 60.00321 * 1 2 3 29 29 H 1.08001 * 119.99722 * 179.97438 * 2 1 3 30 30 H 1.07995 * 119.99833 * 292.86323 * 4 3 2 31 31 H 1.08003 * 119.99911 * 172.11418 * 5 4 3 32 32 H 0.96997 * 120.00199 * 4.94529 * 8 6 5 33 33 H 1.07999 * 119.97667 * 359.97438 * 10 9 8 34 34 H 1.08001 * 119.69515 * 180.29776 * 11 10 9 35 35 H 1.08000 * 120.03116 * 180.02562 * 14 12 11 36 36 H 0.97000 * 120.00034 * 179.97438 * 19 18 16 37 37 H 1.08996 * 109.47048 * 334.08371 * 24 3 2 38 38 H 1.08999 * 109.47238 * 214.08531 * 24 3 2 39 39 H 1.08996 * 109.47269 * 60.00057 * 25 24 3 40 40 H 1.08994 * 109.47107 * 180.02562 * 25 24 3 41 41 H 1.08999 * 109.47176 * 300.00119 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1742 1.1555 0.0000 4 6 3.6374 1.1555 0.0006 5 6 4.3139 1.6102 -1.0784 6 6 3.5938 1.9394 -2.3074 7 8 2.3839 1.8140 -2.3560 8 7 4.2695 2.3817 -3.3864 9 6 3.5774 2.7922 -4.5193 10 6 2.3219 2.2724 -4.7985 11 6 1.6355 2.6885 -5.9230 12 6 2.1962 3.6187 -6.7907 13 17 1.3165 4.1194 -8.2011 14 6 3.4326 4.1422 -6.5430 15 6 4.1498 3.7395 -5.4010 16 6 5.4278 4.2749 -5.1380 17 1 5.7718 4.3757 -4.1193 18 6 6.2503 4.6756 -6.1973 19 7 5.8192 4.5880 -7.4296 20 14 7.9633 5.3355 -5.8517 21 1 8.7613 4.2978 -5.1506 22 1 8.6257 5.6882 -7.1331 23 1 7.8644 6.5456 -4.9967 24 6 1.4207 2.4606 -0.0006 25 6 1.2542 2.9540 1.4381 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 2.0470 -0.9353 0.0004 30 1 4.1770 0.7923 0.8627 31 1 5.3863 1.7302 -1.0323 32 1 5.2388 2.4137 -3.3721 33 1 1.8790 1.5452 -4.1341 34 1 0.6563 2.2838 -6.1325 35 1 3.8599 4.8646 -7.2227 36 1 6.3890 4.8661 -8.1637 37 1 0.4388 2.3131 -0.4501 38 1 1.9764 3.2007 -0.5765 39 1 2.2361 3.1016 1.8876 40 1 0.7088 3.8977 1.4377 41 1 0.6985 2.2139 2.0140 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493117228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:02 Heat of formation + Delta-G solvation = -10.542341 kcal Electronic energy + Delta-G solvation = -24043.571695 eV Core-core repulsion = 20527.926322 eV Total energy + Delta-G solvation = -3515.645373 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.28087 -39.36487 -37.84994 -37.09563 -35.52626 -35.17848 -33.42884 -32.06293 -31.56756 -30.21010 -27.89785 -27.12965 -24.53719 -24.03159 -23.20125 -21.99541 -20.76100 -19.37922 -18.98234 -18.01812 -17.77775 -17.04000 -16.32970 -16.23016 -15.88079 -15.40973 -15.10077 -14.98260 -14.58817 -14.38432 -14.32482 -14.02501 -13.89115 -13.76196 -13.34967 -13.13458 -13.11005 -12.88641 -12.80579 -12.56821 -12.46960 -12.19428 -12.12808 -11.91358 -11.73728 -11.54831 -11.43316 -11.12021 -10.82862 -10.44577 -10.32078 -9.38106 -9.22155 -8.72672 -8.43416 -6.39271 0.19616 0.79902 1.01838 1.42190 1.43863 1.53141 1.54695 1.57974 2.22129 2.45521 2.58603 2.75740 3.60187 3.88493 4.01627 4.14497 4.36573 4.48151 4.52527 4.57867 4.58913 4.64376 4.77923 4.85054 4.93973 4.99995 5.04286 5.11681 5.15491 5.20218 5.25863 5.31668 5.33856 5.42439 5.50281 5.57847 5.77158 5.86640 5.92012 6.04136 6.11559 6.16511 6.52685 6.76162 6.88299 6.98746 7.48168 8.35630 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.011685 B = 0.004190 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.754643 B = 6680.981743 C = 8528.313342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.167 4.167 3 C -0.092 4.092 4 C -0.018 4.018 5 C -0.217 4.217 6 C 0.517 3.483 7 O -0.548 6.548 8 N -0.636 5.636 9 C 0.030 3.970 10 C -0.102 4.102 11 C -0.218 4.218 12 C -0.028 4.028 13 Cl -0.108 7.108 14 C -0.165 4.165 15 C 0.072 3.928 16 C -0.477 4.477 17 H 0.089 0.911 18 C 0.032 3.968 19 N -0.829 5.829 20 Si 0.988 3.012 21 H -0.253 1.253 22 H -0.276 1.276 23 H -0.262 1.262 24 C -0.066 4.066 25 C -0.141 4.141 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.113 0.887 30 H 0.171 0.829 31 H 0.159 0.841 32 H 0.413 0.587 33 H 0.135 0.865 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.287 0.713 37 H 0.057 0.943 38 H 0.039 0.961 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.267 -5.185 14.025 14.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.185 4.185 3 C -0.092 4.092 4 C -0.037 4.037 5 C -0.238 4.238 6 C 0.309 3.691 7 O -0.429 6.429 8 N -0.277 5.277 9 C -0.066 4.066 10 C -0.123 4.123 11 C -0.239 4.239 12 C -0.055 4.055 13 Cl -0.079 7.079 14 C -0.186 4.186 15 C 0.068 3.932 16 C -0.507 4.507 17 H 0.107 0.893 18 C -0.183 4.183 19 N -0.455 5.455 20 Si 0.809 3.191 21 H -0.176 1.176 22 H -0.201 1.201 23 H -0.186 1.186 24 C -0.104 4.104 25 C -0.198 4.198 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.131 0.869 30 H 0.188 0.812 31 H 0.177 0.823 32 H 0.250 0.750 33 H 0.153 0.847 34 H 0.133 0.867 35 H 0.151 0.849 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.082 -5.178 13.656 14.645 hybrid contribution 0.929 0.502 -0.911 1.395 sum -0.153 -4.676 12.745 13.576 Atomic orbital electron populations 1.20742 0.92730 1.02260 1.01359 1.23184 0.96445 0.96584 1.02252 1.20409 0.93051 0.95431 1.00318 1.22794 0.93306 0.90540 0.97107 1.23134 1.01634 1.06701 0.92296 1.19134 0.87605 0.77780 0.84598 1.90709 1.15045 1.53529 1.83615 1.42856 1.10559 1.62041 1.12284 1.17996 0.95712 1.00254 0.92614 1.21090 0.94564 1.00247 0.96361 1.20457 1.01552 1.04391 0.97471 1.20662 0.94143 1.01013 0.89672 1.98240 1.76612 1.91080 1.41994 1.21227 0.92216 1.03722 1.01418 1.17642 0.93753 0.90129 0.91688 1.19558 0.98764 1.37400 0.94937 0.89288 1.26799 1.04538 0.92919 0.94005 1.69805 1.38714 1.36231 1.00761 0.85132 0.75969 0.79444 0.78518 1.17639 1.20113 1.18635 1.20356 0.99046 0.93895 0.97081 1.21721 1.02105 1.00922 0.95025 0.91349 0.90941 0.93408 0.86856 0.81177 0.82300 0.74986 0.84749 0.86687 0.84906 0.90223 0.92481 0.94224 0.92152 0.92576 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.47 8.86 71.24 0.63 -1.84 16 2 C -0.17 -3.93 9.99 24.60 0.25 -3.68 16 3 C -0.09 -2.30 2.91 -18.85 -0.05 -2.36 16 4 C -0.02 -0.39 9.65 23.68 0.23 -0.16 16 5 C -0.22 -5.36 10.01 23.64 0.24 -5.13 16 6 C 0.52 18.21 7.18 86.31 0.62 18.83 16 7 O -0.55 -21.96 9.49 -4.47 -0.04 -22.00 16 8 N -0.64 -24.57 5.06 -306.25 -1.55 -26.12 16 9 C 0.03 1.41 6.47 38.94 0.25 1.66 16 10 C -0.10 -4.81 8.77 22.37 0.20 -4.62 16 11 C -0.22 -10.20 9.81 22.44 0.22 -9.98 16 12 C -0.03 -1.36 6.28 22.06 0.14 -1.22 16 13 Cl -0.11 -4.55 28.93 -2.72 -0.08 -4.63 16 14 C -0.16 -8.60 8.41 22.48 0.19 -8.41 16 15 C 0.07 3.68 5.61 -21.18 -0.12 3.56 16 16 C -0.48 -22.95 8.32 23.37 0.19 -22.76 16 17 H 0.09 3.93 7.28 -2.91 -0.02 3.91 16 18 C 0.03 1.46 5.42 85.26 0.46 1.92 16 19 N -0.83 -41.08 10.37 21.83 0.23 -40.85 16 20 Si 0.99 35.00 29.56 68.60 2.03 37.03 16 21 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 22 H -0.28 -9.65 7.11 99.48 0.71 -8.94 16 23 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 24 C -0.07 -1.81 4.47 29.85 0.13 -1.67 16 25 C -0.14 -2.85 9.89 71.98 0.71 -2.14 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.36 7.72 -2.39 -0.02 1.34 16 28 H 0.05 1.23 7.42 -2.38 -0.02 1.22 16 29 H 0.11 2.39 8.05 -2.91 -0.02 2.37 16 30 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 31 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 32 H 0.41 14.19 7.65 -92.71 -0.71 13.48 16 33 H 0.14 6.26 5.57 -2.91 -0.02 6.25 16 34 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 35 H 0.13 7.30 5.81 -2.91 -0.02 7.29 16 36 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 37 H 0.06 1.69 6.36 -2.39 -0.02 1.67 16 38 H 0.04 1.30 6.90 -2.39 -0.02 1.29 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 1.14 7.76 -2.39 -0.02 1.12 16 Total: -1.00 -59.28 354.20 5.22 -54.06 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: 0.35 Total: 40.50 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 4.29 Total: -37.99 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -1.32 Total: -66.97 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.04 Total: -22.00 kcal Atomic # 14 Polarization: 35.00 SS G_CDS: 2.03 Total: 37.03 kcal Atomic # 17 Polarization: -4.55 SS G_CDS: -0.08 Total: -4.63 kcal Total: -59.28 5.22 -54.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493117228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.520 kcal (2) G-P(sol) polarization free energy of solvation -59.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds