Wall clock time and date at job start Tue Mar 31 2020 12:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33435 * 119.99902 * 2 1 4 4 C 1.46310 * 119.99996 * 180.27738 * 3 2 1 5 5 C 1.35241 * 120.00294 * 180.02562 * 4 3 2 6 6 C 1.46175 * 120.00022 * 179.97438 * 5 4 3 7 7 O 1.21741 * 120.00291 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00204 * 179.97438 * 6 5 4 9 9 C 1.38953 * 120.00374 * 174.14623 * 8 6 5 10 10 C 1.38707 * 120.28229 * 335.21774 * 9 8 6 11 11 C 1.38165 * 120.04333 * 179.71944 * 10 9 8 12 12 C 1.39009 * 120.61232 * 0.55427 * 11 10 9 13 13 Cl 1.73596 * 119.72063 * 179.74299 * 12 11 10 14 14 C 1.36544 * 120.56154 * 359.72285 * 12 11 10 15 15 C 1.40727 * 119.93812 * 359.97438 * 14 12 11 16 16 C 1.41023 * 120.30082 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00289 * 154.35940 * 16 15 14 18 18 C 1.39969 * 120.00006 * 334.36036 * 16 15 14 19 19 N 1.30854 * 119.99765 * 354.31393 * 18 16 15 20 20 Si 1.86796 * 120.00181 * 174.30838 * 18 16 15 21 21 H 1.48501 * 109.47101 * 60.00413 * 20 18 16 22 22 H 1.48498 * 109.47371 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47350 * 300.00399 * 20 18 16 24 24 C 1.50701 * 120.00042 * 0.26906 * 3 2 1 25 25 C 1.53003 * 109.46891 * 95.00256 * 24 3 2 26 26 H 1.09004 * 109.47190 * 299.73231 * 1 2 3 27 27 H 1.09010 * 109.46875 * 59.72419 * 1 2 3 28 28 H 1.08994 * 109.47079 * 179.72694 * 1 2 3 29 29 H 1.07996 * 119.99794 * 180.27341 * 2 1 3 30 30 H 1.08006 * 119.99733 * 359.97438 * 4 3 2 31 31 H 1.07996 * 119.99420 * 359.97438 * 5 4 3 32 32 H 0.97009 * 119.99439 * 354.15356 * 8 6 5 33 33 H 1.07999 * 119.97485 * 359.97438 * 10 9 8 34 34 H 1.08008 * 119.69821 * 180.25547 * 11 10 9 35 35 H 1.08005 * 120.02874 * 180.02562 * 14 12 11 36 36 H 0.97001 * 119.99814 * 179.97438 * 19 18 16 37 37 H 1.08995 * 109.47237 * 214.99823 * 24 3 2 38 38 H 1.08998 * 109.47157 * 335.00708 * 24 3 2 39 39 H 1.09005 * 109.47074 * 59.99620 * 25 24 3 40 40 H 1.08997 * 109.47018 * 179.97438 * 25 24 3 41 41 H 1.09000 * 109.47249 * 299.99933 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1742 1.1556 0.0000 4 6 3.6373 1.1556 -0.0061 5 6 4.3135 2.3268 -0.0056 6 6 5.7753 2.3268 -0.0112 7 8 6.3840 1.2725 -0.0158 8 7 6.4492 3.4939 -0.0112 9 6 7.8338 3.4968 0.1063 10 6 8.4860 2.4366 0.7182 11 6 9.8633 2.4418 0.8272 12 6 10.6081 3.5088 0.3381 13 17 12.3370 3.4945 0.4933 14 6 9.9912 4.5680 -0.2637 15 6 8.5900 4.5840 -0.3928 16 6 7.9450 5.6742 -1.0125 17 1 6.9819 5.5365 -1.4813 18 6 8.5530 6.9349 -1.0200 19 7 9.6648 7.1290 -0.3579 20 14 7.7774 8.3403 -1.9754 21 1 6.4137 8.6030 -1.4497 22 1 8.6101 9.5605 -1.8243 23 1 7.6921 7.9746 -3.4121 24 6 1.4207 2.4607 0.0061 25 6 1.2805 2.9618 1.4449 26 1 -0.3634 0.5097 0.8924 27 1 -0.3633 0.5182 -0.8876 28 1 -0.3633 -1.0276 -0.0049 29 1 2.0470 -0.9353 -0.0045 30 1 4.1773 0.2203 -0.0102 31 1 3.7735 3.2621 -0.0011 32 1 5.9676 4.3320 -0.0931 33 1 7.9171 1.6045 1.1060 34 1 10.3658 1.6114 1.3010 35 1 10.5783 5.3923 -0.6409 36 1 10.0864 8.0026 -0.3634 37 1 1.9656 3.1976 -0.5837 38 1 0.4306 2.3106 -0.4244 39 1 2.2706 3.1118 1.8756 40 1 0.7359 3.9060 1.4494 41 1 0.7356 2.2249 2.0349 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493117229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:05 Heat of formation + Delta-G solvation = -9.740597 kcal Electronic energy + Delta-G solvation = -23273.366134 eV Core-core repulsion = 19757.755527 eV Total energy + Delta-G solvation = -3515.610607 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.69117 -37.85048 -37.17378 -35.42614 -33.88349 -33.57796 -32.39073 -31.43246 -29.78183 -28.65365 -27.13918 -25.45672 -23.59931 -23.01355 -21.49761 -20.39051 -19.17866 -17.99592 -17.59160 -17.08823 -16.46713 -15.47306 -15.26697 -14.69318 -14.56213 -14.37442 -13.94419 -13.69252 -13.36610 -13.28856 -12.94132 -12.70695 -12.59197 -12.38853 -12.22175 -12.07292 -11.88429 -11.61879 -11.48337 -11.24532 -11.07531 -10.92129 -10.79656 -10.57768 -10.42149 -10.35033 -10.24476 -9.68688 -9.43877 -9.28847 -8.84193 -8.29084 -7.57293 -7.01446 -6.71224 -4.56048 0.82046 2.37441 2.66491 2.85690 2.97632 2.98734 3.08620 3.36984 3.78682 3.85509 3.92731 4.48495 4.59564 4.69961 4.95699 4.99977 5.19102 5.25090 5.33777 5.38940 5.45308 5.46945 5.50072 5.69229 5.76867 5.86794 6.06237 6.14534 6.28537 6.35551 6.41085 6.50754 6.73314 6.76186 6.83773 7.03567 7.05069 7.32776 7.54289 7.73020 7.88756 7.91432 8.26450 8.37241 8.64582 8.68273 8.92367 10.03484 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012251 B = 0.003374 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.943686 B = 8297.948216 C =10292.885854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.136 4.136 3 C -0.111 4.111 4 C -0.041 4.041 5 C -0.197 4.197 6 C 0.525 3.475 7 O -0.545 6.545 8 N -0.629 5.629 9 C 0.023 3.977 10 C -0.086 4.086 11 C -0.216 4.216 12 C -0.016 4.016 13 Cl -0.126 7.126 14 C -0.144 4.144 15 C 0.101 3.899 16 C -0.456 4.456 17 H 0.079 0.921 18 C 0.072 3.928 19 N -0.791 5.791 20 Si 0.916 3.084 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.264 1.264 24 C -0.093 4.093 25 C -0.148 4.148 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.115 0.885 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.406 0.594 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.149 0.851 36 H 0.284 0.716 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.605 -4.466 0.801 15.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.154 4.154 3 C -0.111 4.111 4 C -0.061 4.061 5 C -0.217 4.217 6 C 0.315 3.685 7 O -0.426 6.426 8 N -0.270 5.270 9 C -0.072 4.072 10 C -0.106 4.106 11 C -0.236 4.236 12 C -0.042 4.042 13 Cl -0.098 7.098 14 C -0.164 4.164 15 C 0.097 3.903 16 C -0.486 4.486 17 H 0.097 0.903 18 C -0.146 4.146 19 N -0.417 5.417 20 Si 0.741 3.259 21 H -0.189 1.189 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.130 4.130 25 C -0.205 4.205 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.133 0.867 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.242 0.758 33 H 0.143 0.857 34 H 0.120 0.880 35 H 0.166 0.834 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.886 -4.969 0.888 14.776 hybrid contribution -0.239 1.130 -0.406 1.225 sum -14.125 -3.839 0.481 14.645 Atomic orbital electron populations 1.20879 0.92874 1.02306 1.02087 1.23484 0.96115 0.97233 0.98555 1.20545 0.92593 0.95411 1.02557 1.22343 0.92204 0.98630 0.92940 1.23078 0.93481 0.99261 1.05926 1.18315 0.87871 0.84066 0.78198 1.90739 1.69891 1.31333 1.50633 1.42826 1.06440 1.08521 1.69201 1.17819 0.81363 1.00444 1.07588 1.20711 0.93292 0.98039 0.98599 1.20189 0.93235 0.99118 1.11094 1.20535 0.81066 0.97816 1.04801 1.98251 1.15647 1.98752 1.97133 1.21209 0.94340 0.97843 1.03034 1.17272 0.90759 0.91331 0.90938 1.19310 1.04963 0.92582 1.31742 0.90338 1.25933 0.94443 1.00404 0.93811 1.69724 1.15432 1.24813 1.31702 0.86222 0.79786 0.79298 0.80633 1.18916 1.20145 1.18818 1.20624 0.99837 0.94561 0.98021 1.21726 1.02379 1.00655 0.95779 0.91360 0.91288 0.92028 0.86739 0.85228 0.85536 0.75831 0.85686 0.88038 0.83387 0.90457 0.90841 0.90926 0.92140 0.92425 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 8.85 36.01 0.32 -0.52 16 2 C -0.14 -1.21 9.99 -35.99 -0.36 -1.57 16 3 C -0.11 -1.15 5.23 -103.06 -0.54 -1.69 16 4 C -0.04 -0.53 9.38 -37.41 -0.35 -0.88 16 5 C -0.20 -2.80 9.28 -37.46 -0.35 -3.14 16 6 C 0.53 9.92 7.53 -13.08 -0.10 9.82 16 7 O -0.54 -12.00 13.40 5.15 0.07 -11.93 16 8 N -0.63 -12.55 5.09 -10.80 -0.05 -12.60 16 9 C 0.02 0.53 6.46 -83.21 -0.54 -0.01 16 10 C -0.09 -2.04 8.70 -39.44 -0.34 -2.38 16 11 C -0.22 -5.03 9.81 -39.32 -0.39 -5.41 16 12 C -0.02 -0.37 6.28 -39.91 -0.25 -0.62 16 13 Cl -0.13 -2.65 28.93 -51.86 -1.50 -4.15 16 14 C -0.14 -3.65 8.41 -39.25 -0.33 -3.98 16 15 C 0.10 2.54 5.62 -106.65 -0.60 1.94 16 16 C -0.46 -10.93 8.42 -37.88 -0.32 -11.25 16 17 H 0.08 1.74 7.08 -52.49 -0.37 1.37 16 18 C 0.07 1.66 5.36 -17.32 -0.09 1.57 16 19 N -0.79 -19.16 10.39 55.55 0.58 -18.58 16 20 Si 0.92 17.30 29.56 -169.99 -5.03 12.27 16 21 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 22 H -0.28 -5.18 7.11 56.52 0.40 -4.77 16 23 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 24 C -0.09 -0.82 5.05 -27.88 -0.14 -0.96 16 25 C -0.15 -1.25 9.89 37.16 0.37 -0.88 16 26 H 0.07 0.43 7.86 -51.93 -0.41 0.02 16 27 H 0.07 0.43 7.42 -51.92 -0.39 0.05 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.11 0.97 8.05 -52.49 -0.42 0.55 16 30 H 0.13 1.79 7.52 -52.48 -0.39 1.40 16 31 H 0.13 1.49 6.31 -52.49 -0.33 1.16 16 32 H 0.41 7.18 7.50 -40.82 -0.31 6.87 16 33 H 0.13 2.93 5.79 -52.49 -0.30 2.63 16 34 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 35 H 0.15 3.89 5.77 -52.48 -0.30 3.59 16 36 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 37 H 0.07 0.66 6.70 -51.93 -0.35 0.32 16 38 H 0.07 0.54 6.32 -51.93 -0.33 0.22 16 39 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 LS Contribution 357.87 15.07 5.39 5.39 Total: -1.00 -27.68 357.87 -9.68 -37.37 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -5.13 Total: 12.19 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -4.01 Total: -19.97 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: 0.52 Total: -31.18 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Atomic # 17 Polarization: -2.65 SS G_CDS: -1.50 Total: -4.15 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.68 -9.68 -37.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493117229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.625 kcal (2) G-P(sol) polarization free energy of solvation -27.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds