Wall clock time and date at job start Tue Mar 31 2020 12:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 110.38918 * 2 1 4 4 N 1.46507 * 109.46639 * 62.77286 * 3 2 1 5 5 S 1.65599 * 119.99624 * 165.00152 * 4 3 2 6 6 O 1.42101 * 104.27548 * 181.07420 * 5 4 3 7 7 O 1.42107 * 104.27897 * 308.92404 * 5 4 3 8 8 C 1.81399 * 104.45145 * 64.99797 * 5 4 3 9 9 C 1.53003 * 109.46811 * 173.81254 * 8 5 4 10 10 C 1.50702 * 115.54880 * 65.19776 * 9 8 5 11 11 H 1.07997 * 119.99833 * 264.77585 * 10 9 8 12 12 C 1.37873 * 120.00380 * 84.78473 * 10 9 8 13 13 N 1.31523 * 119.99846 * 352.22146 * 12 10 9 14 14 Si 1.86796 * 120.00312 * 172.22478 * 12 10 9 15 15 H 1.48492 * 109.47175 * 59.99812 * 14 12 10 16 16 H 1.48503 * 109.47214 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47138 * 299.99319 * 14 12 10 18 18 C 1.52998 * 117.50023 * 279.52067 * 9 8 5 19 19 C 1.53003 * 117.49594 * 210.86178 * 9 8 5 20 20 C 1.53711 * 110.33921 * 237.77645 * 2 1 3 21 21 C 1.52941 * 112.48852 * 238.30575 * 20 2 1 22 22 C 1.55156 * 108.96157 * 30.09637 * 21 20 2 23 23 S 1.83537 * 110.33138 * 122.22709 * 2 1 3 24 24 H 1.08996 * 109.47595 * 182.22146 * 1 2 3 25 25 H 1.09000 * 109.47198 * 302.22962 * 1 2 3 26 26 H 1.09005 * 109.46734 * 62.22126 * 1 2 3 27 27 H 1.08997 * 109.46902 * 182.76894 * 3 2 1 28 28 H 1.09000 * 109.47158 * 302.77676 * 3 2 1 29 29 H 0.96999 * 120.00429 * 344.99859 * 4 3 2 30 30 H 1.08994 * 109.47340 * 293.80768 * 8 5 4 31 31 H 1.08992 * 109.47119 * 53.81795 * 8 5 4 32 32 H 0.96994 * 120.00068 * 185.02455 * 13 12 10 33 33 H 1.09001 * 117.49472 * 0.02562 * 18 9 8 34 34 H 1.09002 * 117.49809 * 145.01868 * 18 9 8 35 35 H 1.09001 * 117.49681 * 214.97784 * 19 9 8 36 36 H 1.08998 * 117.50044 * 359.97438 * 19 9 8 37 37 H 1.08991 * 108.88766 * 117.51096 * 20 2 1 38 38 H 1.08999 * 108.89166 * 359.09385 * 20 2 1 39 39 H 1.09001 * 109.60311 * 270.17025 * 21 20 2 40 40 H 1.08996 * 109.60647 * 150.02941 * 21 20 2 41 41 H 1.09001 * 111.12987 * 76.47666 * 22 21 20 42 42 H 1.08998 * 111.13015 * 200.60893 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4341 0.0000 4 7 1.6408 2.1119 1.2283 5 16 2.3645 3.5307 1.6817 6 8 1.7297 3.8722 2.9062 7 8 3.7559 3.2458 1.6324 8 6 1.9093 4.7077 0.3786 9 6 2.3940 6.1070 0.7633 10 6 3.8892 6.2780 0.8425 11 1 4.3943 6.1806 1.7920 12 6 4.6123 6.5589 -0.2973 13 7 4.0246 6.5270 -1.4735 14 14 6.4267 6.9849 -0.1712 15 1 7.1593 5.8514 0.4481 16 1 6.9703 7.2423 -1.5289 17 1 6.5929 8.1992 0.6674 18 6 1.5385 6.9047 1.7496 19 6 1.5717 7.2997 0.2711 20 6 2.0643 -0.7685 -1.2193 21 6 2.9637 -1.9406 -0.8239 22 6 2.5047 -2.4858 0.5543 23 16 2.1677 -0.9178 1.4559 24 1 -0.3634 -1.0268 0.0398 25 1 -0.3633 0.5481 0.8693 26 1 -0.3633 0.4790 -0.9093 27 1 3.1517 1.4170 -0.0496 28 1 1.6681 1.9685 -0.8640 29 1 0.9372 1.7298 1.7759 30 1 2.3740 4.4078 -0.5605 31 1 0.8258 4.7182 0.2609 32 1 4.5476 6.6526 -2.2806 33 1 0.6306 6.4324 2.1247 34 1 2.0571 7.5534 2.4555 35 1 2.1121 8.2081 0.0049 36 1 0.6856 7.0874 -0.3272 37 1 2.6335 -0.0829 -1.8468 38 1 1.2201 -1.1499 -1.7937 39 1 3.9976 -1.6018 -0.7572 40 1 2.8877 -2.7289 -1.5728 41 1 1.5999 -3.0859 0.4579 42 1 3.3002 -3.0535 1.0370 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000521192251.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:11 Heat of formation + Delta-G solvation = -81.701010 kcal Electronic energy + Delta-G solvation = -23662.120546 eV Core-core repulsion = 20280.877159 eV Total energy + Delta-G solvation = -3381.243387 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.79885 -38.56215 -37.90627 -36.77662 -35.64039 -34.08039 -32.22629 -29.85422 -28.04973 -27.48950 -26.70336 -23.25202 -22.99063 -21.63487 -21.08232 -20.15032 -18.58714 -18.35567 -17.76489 -16.90511 -16.80564 -16.68305 -16.26573 -15.74759 -15.52889 -15.27989 -15.20650 -14.88855 -14.28319 -13.94899 -13.75268 -13.66719 -13.54526 -13.13565 -13.04382 -12.91124 -12.88358 -12.85274 -12.70088 -12.43425 -12.39711 -12.21307 -12.02889 -11.90534 -11.88086 -11.58249 -11.45549 -10.88193 -10.80592 -10.54448 -10.42056 -9.86754 -8.70118 -8.19189 -6.33286 -0.51504 0.86653 1.39170 1.40959 1.45891 1.48355 2.05412 2.40246 2.95279 3.08134 3.38840 3.42933 3.51596 3.59646 3.82560 3.96813 4.01483 4.15191 4.30949 4.34813 4.44197 4.49725 4.53723 4.59655 4.67313 4.72796 4.81688 4.84064 4.88897 4.96237 4.98068 5.03592 5.11929 5.21358 5.24572 5.30235 5.46668 5.59132 5.71940 6.08952 6.23044 6.71836 7.38647 8.87774 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.017158 B = 0.004306 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.501638 B = 6501.436526 C = 7124.674072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.001 4.001 3 C 0.127 3.873 4 N -1.112 6.112 5 S 2.621 3.379 6 O -0.999 6.999 7 O -0.993 6.993 8 C -0.547 4.547 9 C 0.009 3.991 10 C -0.536 4.536 11 H 0.045 0.955 12 C 0.046 3.954 13 N -0.890 5.890 14 Si 0.932 3.068 15 H -0.279 1.279 16 H -0.271 1.271 17 H -0.269 1.269 18 C -0.199 4.199 19 C -0.135 4.135 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.056 4.056 23 S -0.363 6.363 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.418 0.582 30 H 0.127 0.873 31 H 0.136 0.864 32 H 0.266 0.734 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.118 -17.459 -4.517 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.112 4.112 3 C 0.000 4.000 4 N -0.873 5.873 5 S 2.719 3.281 6 O -0.989 6.989 7 O -0.983 6.983 8 C -0.680 4.680 9 C 0.007 3.993 10 C -0.573 4.573 11 H 0.063 0.937 12 C -0.157 4.157 13 N -0.526 5.526 14 Si 0.758 3.242 15 H -0.205 1.205 16 H -0.196 1.196 17 H -0.194 1.194 18 C -0.237 4.237 19 C -0.174 4.174 20 C -0.165 4.165 21 C -0.162 4.162 22 C -0.204 4.204 23 S -0.136 6.136 24 H 0.095 0.905 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.118 0.882 29 H 0.254 0.746 30 H 0.145 0.855 31 H 0.155 0.845 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.084 0.916 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.246 -16.898 -2.863 19.019 hybrid contribution 0.569 0.173 -1.167 1.309 sum -7.677 -16.726 -4.029 18.839 Atomic orbital electron populations 1.22065 0.89965 1.03652 1.03432 1.23517 0.99724 0.94709 0.93287 1.21581 1.00039 0.91835 0.86570 1.55456 1.55076 1.40722 1.36094 1.04406 0.73519 0.74396 0.75765 1.93455 1.77544 1.84405 1.43533 1.93483 1.34011 1.83403 1.87407 1.29831 1.09803 1.11271 1.17097 1.18420 0.92154 0.87529 1.01204 1.20649 0.91120 1.51197 0.94376 0.93679 1.25463 1.01454 0.93695 0.95090 1.69998 1.36839 1.48229 0.97488 0.86009 0.81410 0.78972 0.77848 1.20513 1.19576 1.19393 1.23247 1.01994 1.05420 0.92991 1.22515 1.00730 0.99372 0.94776 1.22201 1.01414 0.97129 0.95804 1.22387 1.00034 0.97900 0.95869 1.24429 1.05307 0.94281 0.96357 1.88540 1.85893 1.16705 1.22450 0.90461 0.92318 0.89379 0.91408 0.88220 0.74565 0.85482 0.84537 0.92439 0.88332 0.90117 0.91517 0.89102 0.89525 0.87864 0.91561 0.87292 0.87473 0.87303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.25 71.98 0.59 -1.40 16 2 C 0.00 -0.03 0.86 -10.56 -0.01 -0.04 16 3 C 0.13 3.28 4.85 86.38 0.42 3.70 16 4 N -1.11 -33.85 5.38 -187.48 -1.01 -34.86 16 5 S 2.62 108.64 5.19 -56.49 -0.29 108.35 16 6 O -1.00 -45.37 18.08 -127.65 -2.31 -47.68 16 7 O -0.99 -50.17 17.17 -127.65 -2.19 -52.36 16 8 C -0.55 -22.19 5.93 71.98 0.43 -21.77 16 9 C 0.01 0.44 1.32 -52.93 -0.07 0.37 16 10 C -0.54 -29.95 8.18 25.60 0.21 -29.74 16 11 H 0.04 2.64 7.83 -2.91 -0.02 2.62 16 12 C 0.05 2.53 5.38 84.65 0.46 2.99 16 13 N -0.89 -48.32 12.98 21.45 0.28 -48.04 16 14 Si 0.93 44.13 29.55 68.60 2.03 46.16 16 15 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 C -0.20 -8.64 9.96 30.62 0.30 -8.34 16 19 C -0.13 -5.99 9.49 30.62 0.29 -5.70 16 20 C -0.13 -1.78 5.74 30.81 0.18 -1.60 16 21 C -0.12 -1.62 6.34 31.31 0.20 -1.42 16 22 C -0.06 -0.84 7.52 72.72 0.55 -0.30 16 23 S -0.36 -9.05 21.64 -56.49 -1.22 -10.27 16 24 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 1.00 6.78 -2.39 -0.02 0.98 16 26 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.07 2.07 7.69 -2.39 -0.02 2.05 16 28 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.42 11.39 7.15 -96.75 -0.69 10.70 16 30 H 0.13 5.31 8.14 -2.39 -0.02 5.29 16 31 H 0.14 4.39 8.09 -2.39 -0.02 4.37 16 32 H 0.27 13.74 8.32 -92.71 -0.77 12.97 16 33 H 0.10 3.77 8.14 -2.39 -0.02 3.76 16 34 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 35 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 37 H 0.09 1.24 7.62 -2.39 -0.02 1.23 16 38 H 0.10 0.95 7.62 -2.39 -0.02 0.93 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -73.40 363.93 -0.86 -74.27 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.31 Total: 27.68 kcal Atomic # 6 Polarization: -66.79 SS G_CDS: 3.54 Total: -63.25 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -0.73 Total: -82.90 kcal Atomic # 8 Polarization: -95.53 SS G_CDS: -4.50 Total: -100.03 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 99.59 SS G_CDS: -1.52 Total: 98.08 kcal Total: -73.40 -0.86 -74.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521192251.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.436 kcal (2) G-P(sol) polarization free energy of solvation -73.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds