Wall clock time and date at job start Tue Mar 31 2020 12:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39764 * 125.83542 * 2 1 4 4 C 1.36115 * 107.82537 * 180.14562 * 3 2 1 5 5 N 1.39464 * 126.21201 * 179.84755 * 4 3 2 6 6 C 1.34783 * 120.00402 * 359.69045 * 5 4 3 7 7 O 1.21291 * 119.99943 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00085 * 180.02562 * 6 5 4 9 9 H 1.08995 * 109.47172 * 59.99745 * 8 6 5 10 10 C 1.52998 * 109.46985 * 299.99609 * 8 6 5 11 11 C 1.50697 * 109.46955 * 179.97438 * 8 6 5 12 12 C 1.38421 * 122.53935 * 239.99453 * 11 8 6 13 13 C 1.33388 * 114.92066 * 179.72463 * 12 11 8 14 14 S 1.75885 * 109.59458 * 0.27968 * 13 12 11 15 15 C 1.33395 * 122.53872 * 60.25513 * 11 8 6 16 16 N 1.35256 * 107.56791 * 359.58305 * 4 3 2 17 17 C 1.46501 * 126.04584 * 180.22484 * 16 4 3 18 18 C 1.50700 * 109.46859 * 90.00331 * 17 16 4 19 19 H 1.07997 * 120.00158 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99702 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00235 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99866 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47010 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47037 * 119.99801 * 22 20 18 25 25 H 1.48500 * 109.46953 * 239.99629 * 22 20 18 26 26 N 1.30851 * 125.84354 * 179.67778 * 2 1 3 27 27 H 1.09005 * 109.47084 * 270.29542 * 1 2 3 28 28 H 1.08992 * 109.47666 * 30.29841 * 1 2 3 29 29 H 1.09000 * 109.46660 * 150.30381 * 1 2 3 30 30 H 1.07999 * 126.08427 * 359.97438 * 3 2 1 31 31 H 0.96997 * 120.00208 * 179.69167 * 5 4 3 32 32 H 1.09006 * 109.47505 * 300.00502 * 10 8 6 33 33 H 1.09003 * 109.47012 * 60.00334 * 10 8 6 34 34 H 1.08993 * 109.47394 * 180.02562 * 10 8 6 35 35 H 1.08002 * 122.54201 * 0.02562 * 12 11 8 36 36 H 1.08004 * 125.20514 * 180.24987 * 13 12 11 37 37 H 1.07998 * 125.20353 * 359.97100 * 15 11 8 38 38 H 1.09001 * 109.47038 * 209.99865 * 17 16 4 39 39 H 1.08996 * 109.47157 * 330.00240 * 17 16 4 40 40 H 0.97000 * 120.00567 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1331 0.0000 4 6 3.6197 0.7122 -0.0033 5 7 4.7512 1.5276 -0.0074 6 6 4.6156 2.8686 -0.0147 7 8 3.5095 3.3662 -0.0182 8 6 5.8382 3.7496 -0.0197 9 1 6.4332 3.5402 -0.9086 10 6 6.6738 3.4694 1.2310 11 6 5.4151 5.1959 -0.0282 12 6 5.7663 6.0684 -1.0438 13 6 5.3053 7.3119 -0.9009 14 16 4.3787 7.4299 0.5894 15 6 4.6781 5.7336 0.9450 16 7 3.6093 -0.6403 0.0041 17 6 4.7872 -1.5114 0.0084 18 6 5.1915 -1.8024 1.4307 19 1 4.6273 -1.3810 2.2495 20 6 6.2817 -2.6066 1.6866 21 7 6.9685 -3.1202 0.6896 22 14 6.7825 -2.9679 3.4496 23 1 5.8539 -2.2765 4.3796 24 1 6.7255 -4.4322 3.6902 25 1 8.1666 -2.4819 3.6805 26 7 2.2732 -1.0607 0.0060 27 1 -0.3633 0.0053 1.0277 28 1 -0.3634 0.8872 -0.5184 29 1 -0.3632 -0.8927 -0.5091 30 1 1.9901 2.1597 -0.0004 31 1 5.6358 1.1297 -0.0050 32 1 6.0787 3.6787 2.1199 33 1 6.9798 2.4233 1.2366 34 1 7.5578 4.1069 1.2276 35 1 6.3639 5.7642 -1.8904 36 1 5.4755 8.1226 -1.5940 37 1 4.3165 5.2067 1.8156 38 1 4.5499 -2.4458 -0.5002 39 1 5.6083 -1.0148 -0.5084 40 1 7.7358 -3.6858 0.8696 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523161868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:41 Heat of formation + Delta-G solvation = 70.365037 kcal Electronic energy + Delta-G solvation = -24083.752050 eV Core-core repulsion = 20605.951541 eV Total energy + Delta-G solvation = -3477.800509 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94848 -39.73059 -37.78718 -34.73491 -33.79076 -33.18849 -32.03199 -29.22457 -28.89447 -28.04959 -26.03856 -25.47060 -23.58396 -22.78419 -21.15145 -19.78350 -19.26856 -18.53256 -17.85425 -17.02425 -16.68435 -16.20322 -15.51903 -15.19055 -14.78942 -14.33137 -14.24253 -13.91034 -13.61471 -13.16090 -12.89505 -12.83442 -12.78377 -12.50017 -12.46490 -12.30423 -12.06369 -11.80238 -11.73385 -11.58864 -11.49872 -11.06624 -10.92333 -10.79706 -10.37284 -10.32816 -9.84543 -9.80136 -9.42748 -8.83123 -8.74344 -8.47379 -7.90867 -7.42424 -6.35113 -4.43506 0.96400 1.59172 1.90906 2.28181 2.50038 2.95911 3.13351 3.14659 3.22727 3.28718 3.62096 3.82657 4.23081 4.54795 4.62779 4.91334 4.98361 5.07613 5.11414 5.24737 5.37298 5.52538 5.62919 5.64235 5.66885 5.93830 6.02441 6.04087 6.16419 6.19801 6.25961 6.31814 6.39504 6.44704 6.68204 6.83330 7.03977 7.52653 7.58229 7.64211 7.78479 7.92840 8.33134 8.62013 8.71179 9.24253 10.72021 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012487 B = 0.003821 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.766947 B = 7326.616192 C = 8852.262228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.296 4.296 4 C 0.303 3.697 5 N -0.639 5.639 6 C 0.522 3.478 7 O -0.506 6.506 8 C -0.044 4.044 9 H 0.109 0.891 10 C -0.145 4.145 11 C -0.092 4.092 12 C -0.122 4.122 13 C -0.219 4.219 14 S 0.090 5.910 15 C -0.170 4.170 16 N -0.345 5.345 17 C 0.256 3.744 18 C -0.539 4.539 19 H 0.065 0.935 20 C 0.067 3.933 21 N -0.890 5.890 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 N -0.286 5.286 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.161 0.839 31 H 0.416 0.584 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.140 0.860 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.418 18.285 -2.293 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.328 4.328 4 C 0.080 3.920 5 N -0.286 5.286 6 C 0.308 3.692 7 O -0.379 6.379 8 C -0.068 4.068 9 H 0.127 0.873 10 C -0.203 4.203 11 C -0.104 4.104 12 C -0.153 4.153 13 C -0.354 4.354 14 S 0.353 5.647 15 C -0.306 4.306 16 N -0.130 5.130 17 C 0.139 3.861 18 C -0.578 4.578 19 H 0.083 0.917 20 C -0.137 4.137 21 N -0.527 5.527 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.206 1.206 26 N -0.112 5.112 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.178 0.822 31 H 0.252 0.748 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.157 0.843 36 H 0.180 0.820 37 H 0.180 0.820 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.651 18.393 -1.613 18.537 hybrid contribution 1.763 -0.934 0.166 2.002 sum 0.112 17.459 -1.447 17.519 Atomic orbital electron populations 1.20014 0.87646 1.02295 1.02114 1.22027 0.96484 0.91082 1.01868 1.21263 0.89100 1.00396 1.22052 1.17943 0.88079 0.83326 1.02649 1.42791 1.08201 1.05562 1.72043 1.20473 0.91353 0.81214 0.76178 1.90645 1.26609 1.73610 1.47007 1.19924 0.94575 0.90076 1.02206 0.87277 1.21860 0.99748 1.03032 0.95635 1.18289 1.01831 0.94926 0.95384 1.20023 1.02713 0.92606 0.99909 1.25473 1.06261 1.01426 1.02277 1.84211 1.52988 1.08931 1.18565 1.25394 1.04145 0.96812 1.04233 1.49338 1.06503 1.02202 1.54982 1.19618 0.77844 0.89776 0.98911 1.21379 1.13181 1.31854 0.91347 0.91667 1.24931 0.95716 0.94861 0.98155 1.69922 1.19138 1.32609 1.31078 0.86317 0.78343 0.78472 0.83689 1.19560 1.20530 1.20615 1.77348 0.86164 1.21820 1.25847 0.91352 0.91188 0.91575 0.82202 0.74753 0.91708 0.90950 0.90895 0.84259 0.82009 0.81994 0.92585 0.93843 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.01 0.38 -0.56 16 2 C 0.05 1.02 7.21 -82.44 -0.59 0.43 16 3 C -0.30 -6.13 9.58 -39.77 -0.38 -6.51 16 4 C 0.30 6.38 7.66 -153.17 -1.17 5.20 16 5 N -0.64 -11.00 5.31 -11.46 -0.06 -11.06 16 6 C 0.52 8.09 7.02 -10.98 -0.08 8.01 16 7 O -0.51 -9.14 12.37 5.55 0.07 -9.07 16 8 C -0.04 -0.50 2.97 -92.93 -0.28 -0.78 16 9 H 0.11 1.02 8.03 -51.93 -0.42 0.60 16 10 C -0.15 -1.49 8.92 37.16 0.33 -1.16 16 11 C -0.09 -1.07 4.28 -106.25 -0.45 -1.53 16 12 C -0.12 -1.25 9.92 -41.21 -0.41 -1.66 16 13 C -0.22 -2.08 11.23 29.04 0.33 -1.75 16 14 S 0.09 0.91 23.34 -107.50 -2.51 -1.60 16 15 C -0.17 -2.03 9.27 29.04 0.27 -1.76 16 16 N -0.34 -8.09 3.60 -61.57 -0.22 -8.31 16 17 C 0.26 6.36 6.01 -5.19 -0.03 6.33 16 18 C -0.54 -14.34 9.39 -34.44 -0.32 -14.67 16 19 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 20 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -24.04 13.29 55.43 0.74 -23.31 16 22 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 N -0.29 -6.73 12.56 33.65 0.42 -6.30 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.16 3.23 5.83 -52.49 -0.31 2.93 16 31 H 0.42 6.58 7.38 -40.82 -0.30 6.28 16 32 H 0.06 0.70 7.74 -51.93 -0.40 0.30 16 33 H 0.07 0.76 7.56 -51.93 -0.39 0.37 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.16 1.95 7.93 -52.49 -0.42 1.53 16 38 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.04 1.04 7.50 -51.93 -0.39 0.65 16 40 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -31.38 355.61 -8.87 -40.25 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.13 Total: 7.35 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -2.51 Total: -8.73 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.88 Total: -48.98 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.07 Total: -9.07 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.51 Total: -1.60 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.38 -8.87 -40.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523161868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.611 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds