Wall clock time and date at job start Tue Mar 31 2020 12:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 117.00140 * 2 1 4 4 C 1.38755 * 120.05296 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.93999 * 180.26024 * 4 3 2 6 6 C 1.38291 * 120.05217 * 359.41787 * 5 4 3 7 7 C 1.50699 * 119.94050 * 180.32804 * 6 5 4 8 8 C 1.38237 * 120.11396 * 0.60010 * 6 5 4 9 9 C 1.38168 * 120.05874 * 359.68307 * 8 6 5 10 10 C 1.50693 * 120.03231 * 179.97438 * 9 8 6 11 11 S 1.80997 * 109.47421 * 270.02208 * 10 9 8 12 12 C 1.76199 * 100.00258 * 179.97438 * 11 10 9 13 13 N 1.32388 * 126.25718 * 0.02781 * 12 11 10 14 14 N 1.28511 * 110.20228 * 179.97438 * 13 12 11 15 15 C 1.33102 * 109.74971 * 359.97438 * 14 13 12 16 16 C 1.39766 * 126.56870 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00487 * 180.02562 * 16 15 14 18 18 C 1.40085 * 120.00113 * 0.02562 * 16 15 14 19 19 N 1.30819 * 119.99741 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00394 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46925 * 60.00233 * 20 18 16 22 22 H 1.48496 * 109.47160 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47337 * 300.00481 * 20 18 16 24 24 N 1.36663 * 126.25772 * 179.71054 * 12 11 10 25 25 C 1.46508 * 127.15457 * 0.03941 * 24 12 11 26 26 H 1.08997 * 109.47417 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47541 * 300.00453 * 1 2 3 28 28 H 1.09007 * 109.46731 * 60.00115 * 1 2 3 29 29 H 1.08002 * 120.02789 * 359.97438 * 4 3 2 30 30 H 1.08004 * 119.96940 * 179.72331 * 5 4 3 31 31 H 1.09005 * 109.47099 * 270.27570 * 7 6 5 32 32 H 1.09004 * 109.47385 * 30.27597 * 7 6 5 33 33 H 1.09000 * 109.47226 * 150.27493 * 7 6 5 34 34 H 1.08006 * 119.97221 * 179.70056 * 8 6 5 35 35 H 1.09006 * 109.46988 * 30.02104 * 10 9 8 36 36 H 1.09001 * 109.47057 * 150.01731 * 10 9 8 37 37 H 0.97001 * 120.00039 * 179.97438 * 19 18 16 38 38 H 1.08996 * 109.47029 * 90.02415 * 25 24 12 39 39 H 1.09000 * 109.47177 * 210.02008 * 25 24 12 40 40 H 1.08997 * 109.46738 * 330.02151 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0060 6 6 3.3020 3.6757 0.0013 7 6 3.9862 5.0184 0.0028 8 6 4.0560 2.5171 0.0015 9 6 3.4312 1.2847 0.0010 10 6 4.2537 0.0221 0.0006 11 16 4.5837 -0.4826 -1.7060 12 6 5.5329 -1.9386 -1.4164 13 7 5.8580 -2.4392 -0.2348 14 7 6.5550 -3.5087 -0.3824 15 6 6.7206 -3.7622 -1.6785 16 6 7.4214 -4.8364 -2.2340 17 1 7.4896 -4.9398 -3.3069 18 6 8.0354 -5.7790 -1.3991 19 7 7.9523 -5.6540 -0.0996 20 14 8.9713 -7.2150 -2.1414 21 1 10.0836 -6.7004 -2.9802 22 1 9.5223 -8.0622 -1.0534 23 1 8.0518 -8.0244 -2.9809 24 7 6.0629 -2.7609 -2.3706 25 6 5.9589 -2.6116 -3.8244 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 0.2128 2.3203 -0.0014 30 1 1.3340 4.5114 -0.0109 31 1 4.1522 5.3428 -1.0245 32 1 3.3576 5.7460 0.5164 33 1 4.9436 4.9378 0.5176 34 1 5.1345 2.5751 0.0023 35 1 5.1976 0.2032 0.5149 36 1 3.7061 -0.7684 0.5139 37 1 8.3771 -6.3069 0.4786 38 1 6.7949 -2.0148 -4.1891 39 1 5.9829 -3.5953 -4.2933 40 1 5.0215 -2.1137 -4.0723 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527012651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:48 Heat of formation + Delta-G solvation = 48.754919 kcal Electronic energy + Delta-G solvation = -23370.541101 eV Core-core repulsion = 19891.803507 eV Total energy + Delta-G solvation = -3478.737594 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.43773 -40.30104 -37.72252 -33.65993 -33.42637 -33.11699 -31.66135 -29.28458 -27.95447 -27.33905 -26.39112 -25.89032 -25.37481 -22.10712 -20.99872 -20.71763 -20.19312 -18.04437 -17.29654 -16.50485 -16.16346 -15.81856 -15.37475 -14.97243 -14.66367 -14.49452 -14.42362 -13.97020 -13.92052 -13.54501 -13.35385 -13.03269 -12.77736 -12.28160 -12.25161 -12.14605 -12.10322 -11.92268 -11.45666 -11.36869 -11.25260 -10.93294 -10.88713 -10.83523 -10.41598 -10.25496 -9.64651 -9.55942 -8.86733 -8.62782 -8.34778 -8.31701 -8.01065 -6.73393 -6.60357 -4.52086 1.09258 1.34736 2.32452 2.94486 2.96425 3.08419 3.10713 3.26306 3.42206 3.74041 3.90855 4.30102 4.48142 4.60395 4.71096 4.79612 4.94379 5.06142 5.16412 5.22913 5.33946 5.37618 5.42832 5.50553 5.59281 5.60197 5.61364 5.81554 5.90341 5.93352 6.08393 6.20296 6.25902 6.37229 6.53173 6.74570 6.84074 6.93654 7.29294 7.36202 7.54873 7.95629 8.22037 8.74790 8.91707 10.32319 10.70802 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.002876 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.165617 B = 9732.687806 C =10091.987243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.140 3.860 4 C -0.208 4.208 5 C -0.080 4.080 6 C -0.127 4.127 7 C -0.108 4.108 8 C -0.063 4.063 9 C -0.097 4.097 10 C -0.041 4.041 11 S -0.049 6.049 12 C 0.049 3.951 13 N -0.287 5.287 14 N -0.334 5.334 15 C 0.346 3.654 16 C -0.448 4.448 17 H 0.083 0.917 18 C 0.078 3.922 19 N -0.738 5.738 20 Si 0.920 3.080 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.265 1.265 24 N -0.516 5.516 25 C 0.102 3.898 26 H 0.100 0.900 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.133 0.867 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.279 0.721 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.530 15.462 -2.408 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.216 6.216 3 C 0.093 3.907 4 C -0.227 4.227 5 C -0.099 4.099 6 C -0.128 4.128 7 C -0.164 4.164 8 C -0.083 4.083 9 C -0.099 4.099 10 C -0.189 4.189 11 S 0.180 5.820 12 C -0.323 4.323 13 N -0.133 5.133 14 N -0.181 5.181 15 C 0.101 3.899 16 C -0.489 4.489 17 H 0.101 0.899 18 C -0.147 4.147 19 N -0.362 5.362 20 Si 0.744 3.256 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.190 1.190 24 N -0.218 5.218 25 C -0.043 4.043 26 H 0.118 0.882 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.146 0.854 30 H 0.140 0.860 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.150 0.850 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.622 15.507 -1.680 19.451 hybrid contribution 0.447 -1.133 -0.715 1.412 sum -11.175 14.375 -2.395 18.364 Atomic orbital electron populations 1.23060 0.78674 1.04066 1.00953 1.86203 1.21006 1.26322 1.88053 1.18836 0.91599 0.84487 0.95822 1.21158 0.99859 0.92176 1.09479 1.20782 0.93904 0.96857 0.98344 1.19766 0.93576 0.95402 1.04007 1.20702 1.00307 0.93280 1.02140 1.20843 1.00124 0.90235 0.97140 1.18766 0.90264 0.94549 1.06335 1.21987 1.02685 0.97221 0.97008 1.84535 1.64595 1.22822 1.10046 1.25416 1.14275 1.02893 0.89746 1.74535 1.12301 1.07264 1.19156 1.75449 1.20988 1.09570 1.12125 1.21611 0.92339 0.88656 0.87289 1.18051 1.30961 1.05539 0.94324 0.89901 1.25790 0.95643 0.98715 0.94551 1.70009 1.30961 1.31627 1.03568 0.86186 0.79898 0.80149 0.79332 1.18992 1.20100 1.19009 1.46051 1.46897 1.23201 1.05653 1.21481 1.01193 1.02516 0.79108 0.88176 0.92857 0.92757 0.85440 0.85973 0.91443 0.91887 0.91559 0.84955 0.88448 0.87934 0.90978 0.92608 0.90422 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.30 -4.34 9.54 -19.44 -0.19 -4.52 16 3 C 0.14 1.94 6.66 -39.22 -0.26 1.68 16 4 C -0.21 -2.32 9.04 -39.43 -0.36 -2.67 16 5 C -0.08 -0.82 9.70 -39.60 -0.38 -1.20 16 6 C -0.13 -1.39 5.88 -104.60 -0.62 -2.00 16 7 C -0.11 -0.87 10.01 36.00 0.36 -0.51 16 8 C -0.06 -0.81 9.35 -39.61 -0.37 -1.19 16 9 C -0.10 -1.44 5.15 -104.48 -0.54 -1.98 16 10 C -0.04 -0.73 5.13 36.00 0.18 -0.54 16 11 S -0.05 -0.97 21.77 -107.50 -2.34 -3.31 16 12 C 0.05 1.22 8.09 -87.29 -0.71 0.52 16 13 N -0.29 -8.17 11.62 30.89 0.36 -7.81 16 14 N -0.33 -10.34 10.48 31.26 0.33 -10.01 16 15 C 0.35 9.94 7.53 -154.80 -1.17 8.78 16 16 C -0.45 -12.15 9.04 -38.32 -0.35 -12.50 16 17 H 0.08 2.03 7.31 -52.49 -0.38 1.64 16 18 C 0.08 2.04 5.50 -17.29 -0.10 1.95 16 19 N -0.74 -20.67 11.94 55.56 0.66 -20.01 16 20 Si 0.92 18.84 29.56 -169.99 -5.03 13.82 16 21 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 22 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 24 N -0.52 -12.95 3.26 -123.18 -0.40 -13.35 16 25 C 0.10 1.95 10.87 59.85 0.65 2.60 16 26 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 28 H 0.05 0.43 7.66 -51.92 -0.40 0.04 16 29 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16 30 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 34 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 35 H 0.10 1.77 8.09 -51.91 -0.42 1.35 16 36 H 0.10 2.01 7.53 -51.92 -0.39 1.62 16 37 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.38 7.54 -51.93 -0.39 0.99 16 40 H 0.07 1.13 7.84 -51.93 -0.41 0.72 16 LS Contribution 356.18 15.07 5.37 5.37 Total: -1.00 -34.83 356.18 -9.09 -43.92 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.21 Total: 1.73 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -2.65 Total: -5.82 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: 0.95 Total: -51.18 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.19 Total: -4.52 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.82 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -2.34 Total: -3.31 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.83 -9.09 -43.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527012651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.673 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds