Wall clock time and date at job start Tue Mar 31 2020 12:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86796 * 119.99867 * 2 1 4 4 H 1.48500 * 109.47007 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46982 * 299.99462 * 3 2 1 6 6 H 1.48496 * 109.47318 * 59.99842 * 3 2 1 7 7 C 1.38949 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00051 * 202.96578 * 7 2 1 9 9 N 1.37096 * 119.99849 * 22.97357 * 7 2 1 10 10 C 1.34774 * 120.00467 * 53.91480 * 9 7 2 11 11 O 1.21291 * 120.00691 * 180.02562 * 10 9 7 12 12 C 1.50703 * 119.99847 * 359.97438 * 10 9 7 13 13 C 1.50697 * 109.47183 * 179.97438 * 12 10 9 14 14 C 1.30915 * 121.83546 * 85.02985 * 13 12 10 15 15 S 1.75785 * 109.81624 * 180.24173 * 14 13 12 16 16 C 1.76253 * 90.69935 * 359.65605 * 15 14 13 17 17 N 1.32357 * 141.95289 * 179.97438 * 16 15 14 18 18 C 1.33869 * 109.13572 * 180.40114 * 17 16 15 19 19 C 1.34330 * 108.39186 * 0.02562 * 18 17 16 20 20 N 1.35142 * 109.22345 * 0.34137 * 16 15 14 21 21 C 1.46501 * 119.99934 * 233.91586 * 9 7 2 22 22 C 1.54273 * 110.03050 * 59.39032 * 21 9 7 23 23 C 1.54965 * 104.15660 * 217.13647 * 22 21 9 24 24 C 1.54883 * 102.78026 * 37.89120 * 23 22 21 25 25 C 1.53870 * 110.03509 * 302.17366 * 21 9 7 26 26 H 0.96996 * 120.00167 * 354.69942 * 1 2 3 27 27 H 1.09003 * 109.47126 * 59.99920 * 12 10 9 28 28 H 1.08997 * 109.47108 * 300.00089 * 12 10 9 29 29 H 1.07999 * 125.09583 * 359.97438 * 14 13 12 30 30 H 1.08007 * 125.80425 * 180.02562 * 18 17 16 31 31 H 1.08002 * 126.44079 * 180.02562 * 19 18 17 32 32 H 1.08998 * 110.01867 * 180.78112 * 21 9 7 33 33 H 1.08994 * 110.48829 * 335.78538 * 22 21 9 34 34 H 1.09001 * 110.48469 * 98.43264 * 22 21 9 35 35 H 1.08996 * 110.72183 * 279.56965 * 23 22 21 36 36 H 1.08997 * 110.91895 * 156.29927 * 23 22 21 37 37 H 1.08999 * 110.48904 * 203.40945 * 24 23 22 38 38 H 1.08998 * 110.60447 * 80.81215 * 24 23 22 39 39 H 1.08994 * 110.03401 * 238.57217 * 25 21 9 40 40 H 1.09007 * 110.02786 * 359.95054 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3963 -1.2126 6 1 1.8893 2.3964 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0247 -1.2402 0.3655 9 7 1.4050 -2.3437 -0.4624 10 6 0.8552 -2.3634 -1.6927 11 8 0.3204 -3.3721 -2.1021 12 6 0.9038 -1.1315 -2.5595 13 6 0.2248 -1.4155 -3.8745 14 6 -1.0706 -1.2979 -4.0224 15 16 -1.5221 -1.7101 -5.6705 16 6 0.1642 -2.0221 -6.0774 17 7 0.9424 -2.3964 -7.0805 18 6 2.2126 -2.4352 -6.6596 19 6 2.2411 -2.0792 -5.3647 20 7 0.9317 -1.8117 -4.9852 21 6 1.3572 -3.5411 0.3804 22 6 0.6147 -3.2315 1.6968 23 6 1.3857 -4.0446 2.7671 24 6 2.8585 -3.9047 2.3086 25 6 2.7830 -3.9694 0.7691 26 1 -0.4850 0.8364 0.0776 27 1 1.9426 -0.8547 -2.7396 28 1 0.3917 -0.3120 -2.0552 29 1 -1.7594 -0.9973 -3.2468 30 1 3.0689 -2.7066 -7.2593 31 1 3.1174 -2.0119 -4.7370 32 1 0.8556 -4.3507 -0.1497 33 1 0.6623 -2.1657 1.9201 34 1 -0.4217 -3.5639 1.6374 35 1 1.0751 -5.0893 2.7556 36 1 1.2471 -3.6130 3.7584 37 1 3.4585 -4.7281 2.6959 38 1 3.2713 -2.9487 2.6304 39 1 2.9731 -4.9871 0.4283 40 1 3.5107 -3.2869 0.3299 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531964577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:35 Heat of formation + Delta-G solvation = 48.518979 kcal Electronic energy + Delta-G solvation = -25153.757172 eV Core-core repulsion = 21675.009347 eV Total energy + Delta-G solvation = -3478.747825 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.65489 -40.89766 -38.71135 -37.49466 -36.05284 -33.39816 -32.16282 -31.27889 -29.48282 -29.43880 -28.23593 -26.57275 -24.42963 -22.85975 -22.04342 -21.43170 -21.12668 -20.79621 -19.11877 -18.56852 -17.54059 -17.28491 -16.86779 -16.54740 -16.17852 -15.95525 -15.88175 -15.66340 -15.31225 -15.06184 -14.39979 -14.35256 -14.17171 -13.72634 -13.59596 -13.24637 -12.99246 -12.82794 -12.58212 -12.48791 -12.27666 -12.21032 -12.05574 -11.89114 -11.83271 -11.48001 -11.40660 -11.34807 -11.33230 -10.80161 -10.38651 -9.88292 -9.22672 -8.63319 -8.35815 -6.20644 -0.11242 -0.04559 0.57988 1.16937 1.39396 1.49878 1.57710 1.59279 1.86667 2.05422 2.29167 2.90226 2.95336 3.43407 3.63643 3.85206 3.89262 4.05077 4.15804 4.25582 4.35419 4.41220 4.49946 4.61439 4.70768 4.72215 4.78229 4.82014 4.88180 4.91370 5.06386 5.11998 5.15505 5.23635 5.41169 5.48147 5.52330 5.55138 5.63776 5.82312 6.10617 6.64086 6.67007 6.95456 7.58202 8.05289 8.68189 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.013887 B = 0.004866 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.831998 B = 5753.373282 C = 6440.996354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.028 3.972 3 Si 0.954 3.046 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.349 4.349 8 H 0.088 0.912 9 N -0.443 5.443 10 C 0.501 3.499 11 O -0.637 6.637 12 C -0.065 4.065 13 C 0.094 3.906 14 C -0.216 4.216 15 S 0.211 5.789 16 C 0.104 3.896 17 N -0.489 5.489 18 C 0.012 3.988 19 C -0.063 4.063 20 N -0.401 5.401 21 C 0.121 3.879 22 C -0.115 4.115 23 C -0.113 4.113 24 C -0.108 4.108 25 C -0.121 4.121 26 H 0.277 0.723 27 H 0.095 0.905 28 H 0.132 0.868 29 H 0.201 0.799 30 H 0.222 0.778 31 H 0.199 0.801 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 -0.055 -1.046 3.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.178 4.178 3 Si 0.778 3.222 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.206 1.206 7 C -0.477 4.477 8 H 0.105 0.895 9 N -0.161 5.161 10 C 0.290 3.710 11 O -0.526 6.526 12 C -0.107 4.107 13 C -0.015 4.015 14 C -0.353 4.353 15 S 0.460 5.540 16 C -0.261 4.261 17 N -0.214 5.214 18 C -0.137 4.137 19 C -0.196 4.196 20 N -0.079 5.079 21 C 0.018 3.982 22 C -0.154 4.154 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.159 4.159 26 H 0.087 0.913 27 H 0.113 0.887 28 H 0.149 0.851 29 H 0.218 0.782 30 H 0.238 0.762 31 H 0.216 0.784 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.688 -0.655 -2.686 3.239 hybrid contribution 1.536 1.105 1.716 2.554 sum 3.224 0.450 -0.970 3.397 Atomic orbital electron populations 1.70056 1.07397 1.29166 1.44514 1.26151 0.95482 1.02183 0.93976 0.85457 0.79872 0.78688 0.78175 1.18152 1.19926 1.20575 1.19349 0.97703 0.84360 1.46244 0.89481 1.43537 1.50891 1.11150 1.10533 1.20323 0.80174 0.87907 0.82561 1.90520 1.51023 1.36044 1.75002 1.20523 1.02132 0.99745 0.88280 1.18888 0.92160 1.01771 0.88714 1.24951 0.96994 1.10856 1.02456 1.84019 0.93561 1.74299 1.02109 1.26733 1.00084 1.11263 0.87984 1.70541 1.02348 1.21736 1.26771 1.22980 0.94813 1.03109 0.92835 1.23362 0.85255 1.12126 0.98846 1.43947 1.08825 1.46364 1.08804 1.21802 0.96428 0.88359 0.91638 1.22474 0.97269 1.01038 0.94590 1.22425 0.95097 0.99721 0.97826 1.22223 0.96642 1.02019 0.93652 1.22335 0.95704 1.00359 0.97548 0.91327 0.88657 0.85107 0.78216 0.76152 0.78440 0.92998 0.91680 0.94364 0.90915 0.90625 0.89816 0.91897 0.91761 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -40.74 11.69 21.66 0.25 -40.48 16 2 C 0.03 1.21 3.46 84.93 0.29 1.50 16 3 Si 0.95 34.87 29.61 68.60 2.03 36.91 16 4 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 5 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.28 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.35 -15.59 6.92 84.04 0.58 -15.01 16 8 H 0.09 3.82 7.18 -2.91 -0.02 3.80 16 9 N -0.44 -20.43 2.35 -609.38 -1.43 -21.86 16 10 C 0.50 24.20 7.19 87.66 0.63 24.83 16 11 O -0.64 -34.41 15.38 -3.06 -0.05 -34.45 16 12 C -0.06 -2.73 4.43 29.10 0.13 -2.60 16 13 C 0.09 3.78 5.24 41.72 0.22 4.00 16 14 C -0.22 -7.83 10.81 67.87 0.73 -7.09 16 15 S 0.21 6.77 23.37 -56.49 -1.32 5.45 16 16 C 0.10 3.96 8.93 179.68 1.60 5.57 16 17 N -0.49 -18.07 11.32 -196.81 -2.23 -20.30 16 18 C 0.01 0.36 11.82 83.49 0.99 1.35 16 19 C -0.06 -2.10 11.97 82.67 0.99 -1.11 16 20 N -0.40 -15.50 3.19 -342.28 -1.09 -16.59 16 21 C 0.12 5.11 3.29 45.72 0.15 5.26 16 22 C -0.12 -4.50 6.42 31.70 0.20 -4.30 16 23 C -0.11 -3.29 6.91 31.91 0.22 -3.07 16 24 C -0.11 -3.04 6.83 31.67 0.22 -2.83 16 25 C -0.12 -4.16 6.25 31.32 0.20 -3.97 16 26 H 0.28 12.14 8.32 -92.71 -0.77 11.37 16 27 H 0.10 3.82 8.10 -2.39 -0.02 3.80 16 28 H 0.13 5.74 5.08 -2.39 -0.01 5.73 16 29 H 0.20 6.71 8.06 -2.91 -0.02 6.68 16 30 H 0.22 4.61 8.06 -2.91 -0.02 4.59 16 31 H 0.20 5.44 8.06 -2.91 -0.02 5.42 16 32 H 0.05 2.42 6.94 -2.39 -0.02 2.40 16 33 H 0.06 2.89 7.09 -2.39 -0.02 2.87 16 34 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 2.20 6.83 -2.38 -0.02 2.18 16 Total: -1.00 -60.59 341.27 4.38 -56.21 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 1.06 Total: 32.60 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 7.15 Total: 2.52 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -4.50 Total: -99.23 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.05 Total: -34.45 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.91 kcal Atomic # 16 Polarization: 6.77 SS G_CDS: -1.32 Total: 5.45 kcal Total: -60.59 4.38 -56.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531964577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.731 kcal (2) G-P(sol) polarization free energy of solvation -60.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds