Wall clock time and date at job start Tue Mar 31 2020 11:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00393 * 2 1 4 4 H 1.48491 * 109.47033 * 239.99883 * 3 2 1 5 5 H 1.48497 * 109.46737 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46985 * 119.99567 * 3 2 1 7 7 C 1.37880 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.51728 * 179.97438 * 9 7 2 11 11 C 1.53044 * 109.27589 * 182.37636 * 10 9 7 12 12 N 1.46847 * 109.51335 * 59.18419 * 11 10 9 13 13 C 1.46899 * 110.99862 * 174.15436 * 12 11 10 14 14 C 1.50705 * 109.46990 * 170.00184 * 13 12 11 15 15 N 1.30927 * 126.40219 * 89.99890 * 14 13 12 16 16 C 1.35396 * 105.57741 * 179.97438 * 15 14 13 17 17 C 1.47729 * 126.45053 * 180.02562 * 16 15 14 18 18 C 1.34855 * 125.27675 * 179.71892 * 17 16 15 19 19 C 1.37820 * 114.72666 * 179.78932 * 18 17 16 20 20 C 1.33711 * 115.06935 * 0.50239 * 19 18 17 21 21 S 1.75860 * 109.74957 * 359.73057 * 20 19 18 22 22 N 1.31043 * 107.09993 * 0.02562 * 16 15 14 23 23 O 1.21281 * 110.04245 * 359.73138 * 22 16 15 24 24 C 1.46847 * 111.20163 * 298.24410 * 12 11 10 25 25 C 1.53041 * 109.51486 * 61.75514 * 24 12 11 26 26 H 0.97004 * 119.99580 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.52260 * 300.12099 * 9 7 2 28 28 H 1.09000 * 109.50507 * 62.44301 * 10 9 7 29 29 H 1.08999 * 109.54263 * 302.33234 * 10 9 7 30 30 H 1.09002 * 109.46396 * 179.19729 * 11 10 9 31 31 H 1.08994 * 109.46485 * 299.17654 * 11 10 9 32 32 H 1.09002 * 109.47485 * 289.99621 * 13 12 11 33 33 H 1.08997 * 109.47251 * 50.00559 * 13 12 11 34 34 H 1.08009 * 122.63150 * 359.97438 * 18 17 16 35 35 H 1.07998 * 122.46010 * 180.22681 * 19 18 17 36 36 H 1.08006 * 125.12658 * 179.69417 * 20 19 18 37 37 H 1.09005 * 109.46836 * 301.74653 * 24 12 11 38 38 H 1.08995 * 109.45748 * 181.76188 * 24 12 11 39 39 H 1.08996 * 109.50341 * 180.87808 * 25 24 12 40 40 H 1.09004 * 109.53393 * 60.77542 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2448 -3.6639 0.0005 11 6 1.4749 -4.9852 -0.0594 12 7 0.6532 -5.0194 -1.2760 13 6 0.0068 -6.3285 -1.4380 14 6 -1.0109 -6.2524 -2.5469 15 7 -0.7965 -6.4917 -3.8161 16 6 -1.9889 -6.3011 -4.4285 17 6 -2.2682 -6.4502 -5.8715 18 6 -3.4683 -6.2593 -6.4563 19 6 -3.4821 -6.4533 -7.8207 20 6 -2.3092 -6.8107 -8.3540 21 16 -1.0887 -6.9116 -7.0920 22 7 -2.8486 -5.9595 -3.5004 23 8 -2.3026 -5.9327 -2.4177 24 6 -0.3407 -3.9383 -1.2761 25 6 0.3751 -2.5858 -1.2525 26 1 -0.4850 0.8401 0.0004 27 1 0.6219 -2.5566 0.8889 28 1 2.8426 -3.6321 0.9114 29 1 2.8994 -3.5846 -0.8674 30 1 2.1801 -5.8162 -0.0739 31 1 0.8312 -5.0704 0.8161 32 1 0.7593 -7.0770 -1.6864 33 1 -0.4892 -6.6064 -0.5081 34 1 -4.3487 -5.9737 -5.8995 35 1 -4.3757 -6.3303 -8.4146 36 1 -2.1375 -7.0082 -9.4019 37 1 -0.9757 -4.0285 -0.3948 38 1 -0.9539 -4.0090 -2.1744 39 1 -0.3629 -1.7838 -1.2369 40 1 0.9997 -2.4885 -2.1405 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541019177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:43 Heat of formation + Delta-G solvation = 86.747068 kcal Electronic energy + Delta-G solvation = -23861.202360 eV Core-core repulsion = 20384.112229 eV Total energy + Delta-G solvation = -3477.090130 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.72332 -39.97555 -38.96031 -37.01986 -36.10320 -34.27948 -32.81538 -31.53990 -30.59511 -28.96811 -26.70126 -26.20812 -24.84284 -23.84598 -23.51587 -22.62203 -20.38231 -19.98862 -19.49278 -19.40141 -18.42388 -17.77101 -16.93542 -16.78011 -16.39977 -16.20471 -15.55064 -14.94879 -14.87173 -14.72758 -14.49893 -14.27394 -14.10133 -13.78316 -13.61120 -13.38709 -13.14068 -13.09258 -12.98848 -12.81815 -12.60740 -12.36279 -12.31213 -12.05122 -11.89807 -11.80477 -11.50853 -11.36672 -10.80915 -10.70526 -10.38634 -9.70148 -9.57407 -9.32963 -8.08111 -6.20995 -0.65138 0.09093 0.36634 0.92910 1.11551 1.41200 1.42580 1.49805 1.62952 1.82102 2.31722 2.43804 2.92783 2.93625 3.19346 3.70209 4.03818 4.08931 4.14383 4.19532 4.31851 4.37163 4.43743 4.47139 4.56734 4.60804 4.76528 4.77182 4.80602 4.98536 4.98839 5.07676 5.18537 5.21564 5.31225 5.34282 5.53383 5.61900 5.91248 5.94970 6.11427 6.20691 6.40638 6.91273 6.92295 7.47007 8.96129 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.016637 B = 0.002969 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.549222 B = 9429.567230 C =10172.322601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.010 3.990 3 Si 0.951 3.049 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.044 3.956 10 C -0.101 4.101 11 C 0.068 3.932 12 N -0.539 5.539 13 C 0.144 3.856 14 C 0.207 3.793 15 N -0.481 5.481 16 C 0.230 3.770 17 C -0.174 4.174 18 C -0.086 4.086 19 C -0.147 4.147 20 C -0.185 4.185 21 S 0.172 5.828 22 N -0.390 5.390 23 O 0.072 5.928 24 C 0.071 3.929 25 C -0.093 4.093 26 H 0.259 0.741 27 H -0.004 1.004 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.108 0.892 31 H 0.042 0.958 32 H 0.149 0.851 33 H 0.102 0.898 34 H 0.146 0.854 35 H 0.179 0.821 36 H 0.208 0.792 37 H 0.033 0.967 38 H 0.039 0.961 39 H 0.057 0.943 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.506 -18.367 -12.243 22.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.188 4.188 3 Si 0.777 3.223 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.570 4.570 8 H 0.071 0.929 9 C 0.026 3.974 10 C -0.139 4.139 11 C -0.059 4.059 12 N -0.266 5.266 13 C 0.016 3.984 14 C -0.014 4.014 15 N -0.215 5.215 16 C -0.040 4.040 17 C -0.293 4.293 18 C -0.122 4.122 19 C -0.176 4.176 20 C -0.322 4.322 21 S 0.436 5.564 22 N -0.100 5.100 23 O 0.014 5.986 24 C -0.057 4.057 25 C -0.132 4.132 26 H 0.068 0.932 27 H 0.014 0.986 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.126 0.874 31 H 0.060 0.940 32 H 0.166 0.834 33 H 0.119 0.881 34 H 0.163 0.837 35 H 0.196 0.804 36 H 0.225 0.775 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.364 -18.484 -13.095 22.901 hybrid contribution -1.847 1.757 0.930 2.713 sum -5.211 -16.727 -12.165 21.330 Atomic orbital electron populations 1.70010 1.07178 1.27014 1.51655 1.25750 0.95641 1.02395 0.94996 0.85722 0.78449 0.79334 0.78833 1.19927 1.21222 1.19363 1.21591 0.93105 0.92245 1.50057 0.92853 1.18665 0.93201 0.92964 0.92589 1.21560 0.97912 0.93693 1.00742 1.22170 0.96119 0.99141 0.88447 1.62188 1.22855 1.01046 1.40529 1.21028 0.91908 0.94177 0.91287 1.29021 0.85298 0.92307 0.94773 1.72072 1.23027 1.22244 1.04114 1.23175 0.85508 0.99805 0.95497 1.21509 1.00156 1.16866 0.90770 1.20643 0.96513 0.99078 0.96005 1.20311 1.00524 1.03618 0.93139 1.26520 0.95564 1.05611 1.04526 1.84498 1.11336 1.65017 0.95509 1.74964 1.21548 1.21854 0.91593 1.85287 1.22879 1.63490 1.26950 1.22023 0.92904 0.92542 0.98210 1.21404 0.99143 0.94084 0.98560 0.93226 0.98601 0.91752 0.93132 0.87352 0.93987 0.83359 0.88066 0.83666 0.80404 0.77494 0.94893 0.94304 0.92455 0.95763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.98 11.37 21.45 0.24 -53.74 16 2 C 0.01 0.59 5.31 84.66 0.45 1.03 16 3 Si 0.95 44.23 29.54 68.60 2.03 46.26 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.53 -29.43 8.57 25.60 0.22 -29.21 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.04 2.19 2.16 -11.46 -0.02 2.17 16 10 C -0.10 -3.91 5.32 30.65 0.16 -3.75 16 11 C 0.07 1.98 5.43 86.33 0.47 2.45 16 12 N -0.54 -17.11 4.80 -900.91 -4.32 -21.43 16 13 C 0.14 3.37 5.90 85.56 0.51 3.88 16 14 C 0.21 6.09 6.15 88.35 0.54 6.64 16 15 N -0.48 -15.45 11.58 -302.28 -3.50 -18.95 16 16 C 0.23 7.42 8.02 136.95 1.10 8.52 16 17 C -0.17 -4.69 6.44 24.00 0.15 -4.54 16 18 C -0.09 -1.90 10.05 21.39 0.22 -1.69 16 19 C -0.15 -2.23 10.16 21.14 0.21 -2.01 16 20 C -0.19 -2.55 11.23 66.79 0.75 -1.80 16 21 S 0.17 3.60 23.32 -56.49 -1.32 2.29 16 22 N -0.39 -13.04 12.16 -58.79 -0.72 -13.75 16 23 O 0.07 2.31 10.55 74.45 0.79 3.09 16 24 C 0.07 2.79 5.00 86.33 0.43 3.23 16 25 C -0.09 -4.58 5.12 30.65 0.16 -4.42 16 26 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 27 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.11 2.34 8.12 -2.39 -0.02 2.32 16 31 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.15 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.10 1.82 8.08 -2.39 -0.02 1.80 16 34 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 35 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 36 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 37 H 0.03 1.28 8.14 -2.38 -0.02 1.27 16 38 H 0.04 1.57 6.04 -2.39 -0.01 1.56 16 39 H 0.06 3.21 6.17 -2.39 -0.01 3.20 16 40 H 0.02 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -69.12 345.12 -0.40 -69.53 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: 1.05 Total: 6.20 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 5.34 Total: -19.50 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -8.30 Total: -107.87 kcal Atomic # 8 Polarization: 2.31 SS G_CDS: 0.79 Total: 3.09 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.32 Total: 2.29 kcal Total: -69.12 -0.40 -69.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541019177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.275 kcal (2) G-P(sol) polarization free energy of solvation -69.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds