Wall clock time and date at job start Tue Mar 31 2020 12:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99954 * 2 1 4 4 H 1.48504 * 109.47128 * 240.00351 * 3 2 1 5 5 H 1.48507 * 109.47192 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47103 * 120.00152 * 3 2 1 7 7 C 1.37877 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00171 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99485 * 359.97438 * 7 2 1 10 10 C 1.53124 * 109.51845 * 180.02562 * 9 7 2 11 11 C 1.53047 * 109.27503 * 182.38025 * 10 9 7 12 12 N 1.46841 * 109.52637 * 59.17824 * 11 10 9 13 13 C 1.46896 * 110.99951 * 174.15871 * 12 11 10 14 14 C 1.50703 * 109.47077 * 169.99800 * 13 12 11 15 15 N 1.30927 * 118.72478 * 269.97991 * 14 13 12 16 16 C 1.35197 * 121.08610 * 180.02562 * 15 14 13 17 17 C 1.40369 * 129.74743 * 179.97438 * 16 15 14 18 18 C 1.32360 * 115.78819 * 180.02562 * 17 16 15 19 19 S 1.75573 * 110.77728 * 0.02562 * 18 17 16 20 20 C 1.39803 * 117.76978 * 359.73192 * 16 15 14 21 21 C 1.40191 * 118.87163 * 0.53256 * 20 16 15 22 22 O 1.35525 * 120.54632 * 179.73536 * 21 20 16 23 23 N 1.32127 * 118.71999 * 90.00498 * 14 13 12 24 24 C 1.46848 * 111.19825 * 298.25687 * 12 11 10 25 25 C 1.53045 * 109.52391 * 61.74152 * 24 12 11 26 26 H 0.97005 * 120.00562 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.52737 * 300.12577 * 9 7 2 28 28 H 1.08998 * 109.50754 * 62.44072 * 10 9 7 29 29 H 1.09000 * 109.53713 * 302.33434 * 10 9 7 30 30 H 1.08999 * 109.45911 * 299.15937 * 11 10 9 31 31 H 1.09000 * 109.45146 * 179.19205 * 11 10 9 32 32 H 1.09007 * 109.47270 * 50.00384 * 13 12 11 33 33 H 1.08996 * 109.47571 * 290.00348 * 13 12 11 34 34 H 1.08004 * 122.10704 * 359.97438 * 17 16 15 35 35 H 1.08000 * 124.61393 * 179.97438 * 18 17 16 36 36 H 0.96701 * 113.99668 * 269.72572 * 22 21 20 37 37 H 1.08998 * 109.46226 * 181.75512 * 24 12 11 38 38 H 1.08998 * 109.46386 * 301.72879 * 24 12 11 39 39 H 1.08997 * 109.50504 * 180.87976 * 25 24 12 40 40 H 1.09003 * 109.52831 * 60.78108 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6638 -0.0005 11 6 1.4751 -4.9851 -0.0605 12 7 0.6533 -5.0195 -1.2770 13 6 0.0071 -6.3287 -1.4388 14 6 -1.0109 -6.2528 -2.5475 15 7 -2.2412 -5.9179 -2.2502 16 6 -3.1929 -5.8357 -3.2070 17 6 -4.5510 -5.4988 -3.0954 18 6 -5.2404 -5.5046 -4.2253 19 16 -4.2141 -5.9491 -5.5788 20 6 -2.8177 -6.1145 -4.5245 21 6 -1.4885 -6.4738 -4.7882 22 8 -1.0892 -6.7564 -6.0521 23 7 -0.6272 -6.5272 -3.7816 24 6 -0.3405 -3.9384 -1.2771 25 6 0.3752 -2.5858 -1.2535 26 1 -0.4851 0.8400 0.0004 27 1 0.6227 -2.5570 0.8882 28 1 2.8429 -3.6321 0.9103 29 1 2.8996 -3.5844 -0.8685 30 1 0.8316 -5.0705 0.8151 31 1 2.1806 -5.8159 -0.0752 32 1 -0.4889 -6.6066 -0.5087 33 1 0.7595 -7.0772 -1.6870 34 1 -5.0050 -5.2513 -2.1473 35 1 -6.2914 -5.2689 -4.3039 36 1 -1.1744 -7.6893 -6.2922 37 1 -0.9538 -4.0091 -2.1754 38 1 -0.9755 -4.0287 -0.3959 39 1 -0.3628 -1.7838 -1.2379 40 1 0.9997 -2.4885 -2.1416 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541951514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:12 Heat of formation + Delta-G solvation = 14.606592 kcal Electronic energy + Delta-G solvation = -24339.304706 eV Core-core repulsion = 20859.086330 eV Total energy + Delta-G solvation = -3480.218376 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.48598 -39.91744 -38.96592 -37.55434 -35.72501 -33.76826 -33.33685 -31.56410 -31.39894 -28.89101 -26.84730 -25.79731 -24.52718 -23.79688 -23.16224 -21.71650 -20.42051 -20.00434 -19.70909 -18.47528 -18.28531 -17.51243 -16.88622 -16.42227 -16.20784 -15.94663 -15.52615 -15.27626 -15.12946 -14.82970 -14.74313 -14.29360 -14.21628 -13.66804 -13.40988 -13.28351 -13.12315 -12.99358 -12.80050 -12.59496 -12.42629 -12.27689 -12.04046 -11.91918 -11.75320 -11.63916 -11.38332 -10.82711 -10.69903 -10.61030 -10.41243 -10.37215 -9.30682 -9.06061 -8.08479 -6.22368 -0.80496 -0.50151 0.21613 0.71172 1.03217 1.40126 1.42365 1.49624 2.10614 2.32335 2.43337 2.64846 3.11169 3.14708 3.18667 3.50331 3.78422 4.03574 4.13001 4.24636 4.31625 4.38651 4.50557 4.57952 4.63055 4.74330 4.77329 4.80788 4.89768 4.95643 5.06505 5.10249 5.20737 5.29494 5.51981 5.60025 5.66948 5.93266 5.96501 6.14785 6.23443 6.34656 6.38788 6.87850 6.89348 7.45498 8.96220 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.016162 B = 0.003447 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.032564 B = 8122.044499 C = 8889.457811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.046 3.954 10 C -0.099 4.099 11 C 0.067 3.933 12 N -0.535 5.535 13 C 0.123 3.877 14 C 0.348 3.652 15 N -0.515 5.515 16 C 0.163 3.837 17 C -0.153 4.153 18 C -0.129 4.129 19 S 0.203 5.797 20 C -0.311 4.311 21 C 0.415 3.585 22 O -0.470 6.470 23 N -0.534 5.534 24 C 0.085 3.915 25 C -0.092 4.092 26 H 0.260 0.740 27 H -0.008 1.008 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.121 0.879 34 H 0.168 0.832 35 H 0.225 0.775 36 H 0.431 0.569 37 H 0.039 0.961 38 H 0.019 0.981 39 H 0.057 0.943 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.618 -18.070 -10.904 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.072 0.928 9 C 0.027 3.973 10 C -0.137 4.137 11 C -0.060 4.060 12 N -0.261 5.261 13 C -0.006 4.006 14 C 0.076 3.924 15 N -0.232 5.232 16 C 0.021 3.979 17 C -0.183 4.183 18 C -0.267 4.267 19 S 0.464 5.536 20 C -0.432 4.432 21 C 0.216 3.784 22 O -0.282 6.282 23 N -0.260 5.260 24 C -0.043 4.043 25 C -0.131 4.131 26 H 0.069 0.931 27 H 0.010 0.990 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.139 0.861 34 H 0.185 0.815 35 H 0.242 0.758 36 H 0.295 0.705 37 H 0.057 0.943 38 H 0.037 0.963 39 H 0.076 0.924 40 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -10.998 -17.532 -12.162 24.005 hybrid contribution -0.503 0.926 1.517 1.847 sum -11.501 -16.605 -10.645 22.833 Atomic orbital electron populations 1.70027 1.07290 1.27091 1.51547 1.25781 0.95663 1.02506 0.94805 0.85672 0.78428 0.79047 0.78876 1.19861 1.20958 1.19300 1.21579 0.93109 0.92180 1.50347 0.92792 1.18647 0.93133 0.93032 0.92487 1.21550 0.97880 0.93642 1.00621 1.22132 0.96024 0.99040 0.88779 1.62119 1.22854 1.01613 1.39548 1.20991 0.93564 0.93114 0.92887 1.22710 0.89749 0.89532 0.90386 1.68342 1.02029 1.15644 1.37202 1.19740 0.95251 0.95432 0.87484 1.19804 0.89811 1.06260 1.02383 1.26172 1.05983 1.00424 0.94137 1.84037 0.93896 1.68845 1.06772 1.24811 1.01139 1.15792 1.01465 1.18758 0.84635 0.89536 0.85477 1.84712 1.87314 1.34709 1.21437 1.67978 1.37372 1.20256 1.00423 1.21864 0.92551 0.92037 0.97853 1.21418 0.99049 0.94224 0.98374 0.93144 0.99015 0.91838 0.93105 0.95074 0.88058 0.91164 0.86102 0.81485 0.75808 0.70483 0.94265 0.96318 0.92446 0.95969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.57 11.37 21.45 0.24 -55.33 16 2 C 0.01 0.62 5.31 84.66 0.45 1.06 16 3 Si 0.95 45.26 29.54 68.60 2.03 47.28 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.53 -30.86 8.56 25.60 0.22 -30.64 16 8 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 9 C 0.05 2.42 2.16 -11.46 -0.02 2.40 16 10 C -0.10 -4.26 5.32 30.65 0.16 -4.10 16 11 C 0.07 2.39 5.42 86.33 0.47 2.86 16 12 N -0.54 -20.41 4.80 -900.92 -4.32 -24.74 16 13 C 0.12 3.84 5.69 85.56 0.49 4.33 16 14 C 0.35 11.64 5.56 138.91 0.77 12.42 16 15 N -0.52 -17.31 9.14 -182.65 -1.67 -18.98 16 16 C 0.16 4.64 7.02 39.52 0.28 4.92 16 17 C -0.15 -3.15 10.16 21.70 0.22 -2.93 16 18 C -0.13 -1.72 11.09 66.73 0.74 -0.98 16 19 S 0.20 3.18 23.29 -56.49 -1.32 1.87 16 20 C -0.31 -7.87 6.50 23.12 0.15 -7.72 16 21 C 0.42 11.39 7.86 85.05 0.67 12.06 16 22 O -0.47 -9.79 13.58 -88.28 -1.20 -10.99 16 23 N -0.53 -17.29 10.35 -300.64 -3.11 -20.40 16 24 C 0.09 3.82 4.78 86.33 0.41 4.23 16 25 C -0.09 -4.87 5.12 30.65 0.16 -4.71 16 26 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 27 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 2.85 8.12 -2.39 -0.02 2.84 16 32 H 0.07 2.04 8.08 -2.38 -0.02 2.02 16 33 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.23 0.95 8.06 -2.91 -0.02 0.93 16 36 H 0.43 3.70 9.06 -74.06 -0.67 3.03 16 37 H 0.04 1.80 5.94 -2.39 -0.01 1.79 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.06 3.39 6.18 -2.39 -0.01 3.38 16 40 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -75.58 340.48 -3.78 -79.36 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.41 Total: 8.75 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 5.16 Total: -6.82 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -8.86 Total: -119.45 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -1.20 Total: -10.99 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.32 Total: 1.87 kcal Total: -75.58 -3.78 -79.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541951514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.970 kcal (2) G-P(sol) polarization free energy of solvation -75.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds