Wall clock time and date at job start Tue Mar 31 2020 12:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00424 * 2 1 4 4 H 1.48499 * 109.47462 * 270.00265 * 3 2 1 5 5 H 1.48502 * 109.46932 * 29.99739 * 3 2 1 6 6 H 1.48500 * 109.47341 * 149.99770 * 3 2 1 7 7 C 1.37882 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00616 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99380 * 0.02562 * 7 2 1 10 10 C 1.53123 * 109.51959 * 179.97438 * 9 7 2 11 11 C 1.53035 * 109.27937 * 182.37668 * 10 9 7 12 12 N 1.46847 * 109.52232 * 59.18192 * 11 10 9 13 13 C 1.46901 * 110.99969 * 174.16210 * 12 11 10 14 14 C 1.50703 * 109.47099 * 73.25746 * 13 12 11 15 15 C 1.37879 * 120.25998 * 114.00724 * 14 13 12 16 16 C 1.39657 * 118.81101 * 180.02562 * 15 14 13 17 17 O 1.22102 * 120.19465 * 179.97438 * 16 15 14 18 18 N 1.36338 * 119.60536 * 359.97438 * 16 15 14 19 19 C 1.37155 * 127.31536 * 180.02562 * 18 16 15 20 20 C 1.30892 * 116.61829 * 180.02562 * 19 18 16 21 21 S 1.75726 * 109.69554 * 0.02562 * 20 19 18 22 22 C 1.35371 * 118.85704 * 0.02562 * 18 16 15 23 23 N 1.32415 * 120.25838 * 293.73189 * 14 13 12 24 24 C 1.46852 * 111.19916 * 298.25786 * 12 11 10 25 25 C 1.53038 * 109.52237 * 61.74027 * 24 12 11 26 26 H 0.97003 * 119.99523 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.52298 * 300.12270 * 9 7 2 28 28 H 1.08999 * 109.50107 * 62.43589 * 10 9 7 29 29 H 1.09000 * 109.53855 * 302.34225 * 10 9 7 30 30 H 1.08996 * 109.46242 * 299.16690 * 11 10 9 31 31 H 1.08996 * 109.45340 * 179.19049 * 11 10 9 32 32 H 1.09005 * 109.47016 * 193.25371 * 13 12 11 33 33 H 1.08999 * 109.46818 * 313.25672 * 13 12 11 34 34 H 1.08005 * 120.59191 * 359.97438 * 15 14 13 35 35 H 1.07998 * 121.69170 * 0.02562 * 19 18 16 36 36 H 1.07999 * 125.15406 * 179.97438 * 20 19 18 37 37 H 1.08991 * 109.46424 * 181.75750 * 24 12 11 38 38 H 1.09000 * 109.46344 * 301.72937 * 24 12 11 39 39 H 1.08997 * 109.50678 * 180.88153 * 25 24 12 40 40 H 1.09000 * 109.50579 * 60.76488 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2449 -3.6640 0.0005 11 6 1.4750 -4.9852 -0.0594 12 7 0.6532 -5.0196 -1.2759 13 6 0.0068 -6.3288 -1.4377 14 6 -1.1103 -6.4647 -0.4353 15 6 -2.4200 -6.5380 -0.8601 16 6 -3.4313 -6.6632 0.0948 17 8 -4.5998 -6.7298 -0.2532 18 7 -3.1061 -6.7105 1.4180 19 6 -3.9641 -6.8308 2.4813 20 6 -3.4221 -6.8546 3.6725 21 16 -1.6759 -6.7175 3.5314 22 6 -1.8022 -6.6339 1.7735 23 7 -0.8413 -6.5202 0.8601 24 6 -0.3406 -3.9384 -1.2761 25 6 0.3752 -2.5859 -1.2525 26 1 -0.4849 0.8401 -0.0004 27 1 0.6220 -2.5566 0.8888 28 1 2.8427 -3.6321 0.9114 29 1 2.8995 -3.5845 -0.8673 30 1 0.8314 -5.0705 0.8162 31 1 2.1803 -5.8160 -0.0740 32 1 -0.3981 -6.4119 -2.4463 33 1 0.7399 -7.1186 -1.2741 34 1 -2.6595 -6.4986 -1.9125 35 1 -5.0328 -6.9022 2.3427 36 1 -3.9658 -6.9440 4.6013 37 1 -0.9539 -4.0090 -2.1743 38 1 -0.9756 -4.0286 -0.3949 39 1 -0.3627 -1.7838 -1.2369 40 1 0.9998 -2.4891 -2.1405 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543808702.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:08 Heat of formation + Delta-G solvation = 25.882079 kcal Electronic energy + Delta-G solvation = -24798.507788 eV Core-core repulsion = 21318.778354 eV Total energy + Delta-G solvation = -3479.729434 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.50537 -40.28940 -39.02045 -38.18350 -35.70284 -33.61135 -32.45117 -31.92003 -31.43406 -28.82176 -27.15467 -26.44609 -24.35762 -23.71365 -23.15973 -22.51357 -20.39448 -20.02296 -19.45271 -18.43654 -18.28345 -17.88087 -16.98583 -16.62350 -16.17107 -15.97003 -15.78675 -15.49977 -15.04793 -14.77357 -14.75052 -14.61927 -14.33195 -14.21563 -13.74936 -13.40596 -13.03122 -12.85981 -12.79316 -12.62876 -12.59048 -12.21491 -11.98657 -11.85998 -11.60054 -11.38644 -11.31251 -11.24153 -10.78783 -10.66013 -10.52093 -10.36678 -9.28729 -8.81684 -8.07387 -6.20999 -1.04021 -0.55071 0.18758 0.37715 0.72922 1.11594 1.41371 1.42163 1.52314 2.27696 2.44434 2.79842 3.12231 3.17921 3.21096 3.62198 4.04395 4.15274 4.23363 4.24754 4.30073 4.34977 4.44493 4.50020 4.68868 4.71277 4.82545 4.83913 4.88857 5.02574 5.10788 5.16441 5.19375 5.26001 5.37751 5.57038 5.62953 5.99043 6.00936 6.20897 6.28259 6.38414 6.41473 6.43264 6.91375 7.47213 8.97150 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.003867 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.912142 B = 7239.066862 C = 7654.303769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.047 3.953 10 C -0.100 4.100 11 C 0.062 3.938 12 N -0.516 5.516 13 C 0.101 3.899 14 C 0.194 3.806 15 C -0.326 4.326 16 C 0.515 3.485 17 O -0.573 6.573 18 N -0.460 5.460 19 C 0.022 3.978 20 C -0.193 4.193 21 S 0.257 5.743 22 C 0.272 3.728 23 N -0.522 5.522 24 C 0.074 3.926 25 C -0.095 4.095 26 H 0.258 0.742 27 H -0.020 1.020 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.170 0.830 35 H 0.204 0.796 36 H 0.251 0.749 37 H 0.072 0.928 38 H -0.001 1.001 39 H 0.056 0.944 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.857 -18.349 7.700 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.568 4.568 8 H 0.071 0.929 9 C 0.029 3.971 10 C -0.138 4.138 11 C -0.066 4.066 12 N -0.239 5.239 13 C -0.028 4.028 14 C 0.061 3.939 15 C -0.356 4.356 16 C 0.321 3.679 17 O -0.455 6.455 18 N -0.169 5.169 19 C -0.103 4.103 20 C -0.329 4.329 21 S 0.509 5.491 22 C -0.093 4.093 23 N -0.250 5.250 24 C -0.054 4.054 25 C -0.134 4.134 26 H 0.068 0.932 27 H -0.002 1.002 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.187 0.813 35 H 0.221 0.779 36 H 0.267 0.733 37 H 0.091 0.909 38 H 0.017 0.983 39 H 0.075 0.925 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.559 -18.113 8.153 20.180 hybrid contribution -2.414 1.171 -0.629 2.756 sum -5.973 -16.942 7.525 19.476 Atomic orbital electron populations 1.70040 1.07299 1.26933 1.51804 1.25756 0.95603 1.02422 0.94882 0.85631 0.78802 0.79446 0.78237 1.20151 1.21111 1.19099 1.21609 0.93066 0.92164 1.50009 0.92864 1.18616 0.93070 0.92877 0.92545 1.21566 0.97905 0.94073 1.00253 1.22202 0.95989 0.97819 0.90545 1.62348 1.21568 1.01562 1.38392 1.21721 0.92177 0.92787 0.96070 1.22763 0.95924 0.84566 0.90667 1.22676 0.91539 1.19818 1.01527 1.17531 0.90883 0.79240 0.80270 1.90923 1.20989 1.54718 1.78915 1.45291 1.07875 1.53535 1.10207 1.21249 0.99693 1.04332 0.85066 1.25841 0.97105 1.07627 1.02342 1.85411 1.03215 1.74897 0.85602 1.27058 0.81980 0.95932 1.04286 1.68163 1.29584 1.25491 1.01800 1.21984 0.92866 0.92169 0.98396 1.21422 0.99160 0.94261 0.98533 0.93249 1.00150 0.92926 0.92804 0.94213 0.89309 0.86125 0.86203 0.81264 0.77941 0.73278 0.90927 0.98260 0.92540 0.94475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.67 11.37 21.45 0.24 -54.42 16 2 C 0.01 0.64 5.31 84.66 0.45 1.09 16 3 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.53 -29.90 8.57 25.60 0.22 -29.68 16 8 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 9 C 0.05 2.45 2.16 -11.46 -0.02 2.43 16 10 C -0.10 -4.21 5.32 30.65 0.16 -4.04 16 11 C 0.06 2.16 5.07 86.33 0.44 2.60 16 12 N -0.52 -17.38 4.86 -900.93 -4.38 -21.76 16 13 C 0.10 2.58 5.88 85.56 0.50 3.08 16 14 C 0.19 5.62 4.41 42.39 0.19 5.80 16 15 C -0.33 -9.86 9.67 22.53 0.22 -9.64 16 16 C 0.51 16.92 7.51 84.34 0.63 17.56 16 17 O -0.57 -21.73 17.46 -5.65 -0.10 -21.83 16 18 N -0.46 -12.33 2.82 -481.03 -1.36 -13.69 16 19 C 0.02 0.39 10.46 83.93 0.88 1.27 16 20 C -0.19 -2.03 11.12 67.89 0.75 -1.27 16 21 S 0.26 4.16 23.37 -56.49 -1.32 2.84 16 22 C 0.27 7.12 8.32 179.40 1.49 8.61 16 23 N -0.52 -15.44 8.19 -182.42 -1.49 -16.93 16 24 C 0.07 2.97 4.88 86.33 0.42 3.39 16 25 C -0.10 -4.70 5.12 30.65 0.16 -4.55 16 26 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 27 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 28 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.04 1.48 6.17 -2.39 -0.01 1.47 16 31 H 0.09 2.59 7.98 -2.39 -0.02 2.57 16 32 H 0.12 2.54 7.92 -2.38 -0.02 2.52 16 33 H 0.12 2.52 7.92 -2.39 -0.02 2.50 16 34 H 0.17 4.60 7.99 -2.91 -0.02 4.58 16 35 H 0.20 3.03 8.00 -2.91 -0.02 3.00 16 36 H 0.25 0.07 8.06 -2.91 -0.02 0.04 16 37 H 0.07 2.67 8.12 -2.39 -0.02 2.66 16 38 H 0.00 -0.04 7.11 -2.39 -0.02 -0.05 16 39 H 0.06 3.17 6.17 -2.39 -0.01 3.16 16 40 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -75.14 336.80 1.17 -73.97 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 1.06 Total: 8.79 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 6.49 Total: -3.36 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -6.98 Total: -106.81 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.10 Total: -21.83 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.32 Total: 2.84 kcal Total: -75.14 1.17 -73.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543808702.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.851 kcal (2) G-P(sol) polarization free energy of solvation -75.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds