Wall clock time and date at job start Tue Mar 31 2020 12:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47146 * 2 1 4 4 H 1.09002 * 109.47108 * 185.16168 * 3 2 1 5 5 C 1.50693 * 109.47207 * 305.15774 * 3 2 1 6 6 H 1.08004 * 120.00659 * 119.99981 * 5 3 2 7 7 C 1.37882 * 120.00262 * 300.00434 * 5 3 2 8 8 N 1.31516 * 119.99884 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00180 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47170 * 60.00003 * 9 7 5 11 11 H 1.48500 * 109.47148 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47497 * 299.99808 * 9 7 5 13 13 N 1.46905 * 109.47219 * 65.15901 * 3 2 1 14 14 C 1.46903 * 110.99626 * 85.90073 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.82086 * 14 13 3 16 16 C 1.34721 * 125.66682 * 89.71373 * 15 14 13 17 17 C 1.40938 * 107.03214 * 179.88699 * 16 15 14 18 18 C 1.35951 * 106.74191 * 0.37304 * 17 16 15 19 19 C 1.47790 * 125.93413 * 179.74058 * 18 17 16 20 20 C 1.39595 * 120.13089 * 359.73212 * 19 18 17 21 21 C 1.37936 * 119.86271 * 179.81375 * 20 19 18 22 22 C 1.38473 * 120.13301 * 0.44634 * 21 20 19 23 23 Cl 1.73605 * 119.86486 * 179.75998 * 22 21 20 24 24 C 1.38473 * 120.27104 * 359.79150 * 22 21 20 25 25 C 1.37935 * 120.13270 * 359.97438 * 24 22 21 26 26 O 1.34315 * 125.65821 * 270.02220 * 15 14 13 27 27 H 1.08994 * 109.46947 * 54.84775 * 1 2 3 28 28 H 1.08998 * 109.46816 * 294.85003 * 1 2 3 29 29 H 1.08999 * 109.47024 * 174.85073 * 1 2 3 30 30 H 1.09003 * 109.46858 * 120.00172 * 2 1 3 31 31 H 1.08996 * 109.47279 * 239.99490 * 2 1 3 32 32 H 0.96998 * 120.00661 * 180.02562 * 8 7 5 33 33 H 1.00897 * 110.99976 * 321.94444 * 13 3 2 34 34 H 1.08994 * 109.46864 * 294.81251 * 14 13 3 35 35 H 1.08994 * 109.47486 * 54.81938 * 14 13 3 36 36 H 1.07998 * 126.48539 * 0.02562 * 16 15 14 37 37 H 1.08005 * 126.63442 * 180.14663 * 17 16 15 38 38 H 1.07993 * 120.06901 * 0.02562 * 20 19 18 39 39 H 1.07995 * 119.93541 * 180.21234 * 21 20 19 40 40 H 1.07993 * 119.93444 * 179.97438 * 24 22 21 41 41 H 1.08003 * 120.07024 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0925 5 6 1.4362 2.1888 -1.1616 6 1 0.8270 3.0628 -0.9840 7 6 1.6612 1.7559 -2.4512 8 7 2.4033 0.6919 -2.6675 9 14 0.9121 2.6806 -3.8909 10 1 1.4066 4.0809 -3.8912 11 1 1.3021 2.0182 -5.1615 12 1 -0.5675 2.6782 -3.7649 13 7 1.6547 2.0981 1.2569 14 6 2.6433 1.8367 2.3116 15 6 2.2831 2.6254 3.5442 16 6 1.4859 2.2004 4.5436 17 6 1.4197 3.2424 5.4903 18 6 2.1815 4.2595 5.0072 19 6 2.4028 5.5649 5.6638 20 6 1.7986 5.8434 6.8910 21 6 2.0120 7.0621 7.5007 22 6 2.8162 8.0119 6.8935 23 17 3.0750 9.5458 7.6642 24 6 3.4143 7.7434 5.6738 25 6 3.2123 6.5265 5.0566 26 8 2.6991 3.8710 3.8260 27 1 -0.3633 0.5917 -0.8402 28 1 -0.3633 0.4319 0.9325 29 1 -0.3633 -1.0235 -0.0922 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 2.5620 0.3875 -3.5747 33 1 0.7320 1.8105 1.5467 34 1 2.6480 0.7730 2.5494 35 1 3.6323 2.1359 1.9648 36 1 0.9928 1.2418 4.6082 37 1 0.8672 3.2358 6.4183 38 1 1.1682 5.1049 7.3637 39 1 1.5479 7.2775 8.4518 40 1 4.0401 8.4882 5.2049 41 1 3.6796 6.3180 4.1054 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547285401.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:41 Heat of formation + Delta-G solvation = 25.596426 kcal Electronic energy + Delta-G solvation = -23033.420966 eV Core-core repulsion = 19519.342688 eV Total energy + Delta-G solvation = -3514.078279 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.43876 -39.39199 -36.80472 -36.65730 -33.30687 -33.07449 -31.87289 -31.37155 -30.73278 -28.45449 -26.36836 -24.50092 -23.41519 -23.27349 -22.40701 -21.16516 -20.12001 -19.38546 -18.01362 -16.75928 -16.24610 -16.02425 -15.56644 -15.31532 -14.77322 -14.58650 -14.00937 -13.89214 -13.77959 -13.43274 -13.20503 -13.17108 -12.74726 -12.66269 -12.48846 -12.00381 -11.93891 -11.83000 -11.72675 -11.35629 -11.10480 -10.92361 -10.76677 -10.56979 -10.06859 -9.94511 -9.90064 -9.63488 -9.40085 -9.39488 -9.07631 -8.37838 -7.82836 -7.36058 -6.01210 -4.02928 0.43492 0.97950 1.81449 2.00506 2.68199 2.89241 3.33088 3.37369 3.41097 3.48085 4.40682 4.42687 4.49401 4.54347 4.92838 4.97731 5.03496 5.11470 5.30122 5.30530 5.42415 5.59765 5.65785 5.68238 5.82621 5.88798 5.91518 6.00934 6.18671 6.24392 6.29529 6.31946 6.41520 6.50514 6.60444 6.82527 7.15479 7.19204 7.30212 7.46835 7.62710 7.83254 8.19530 8.41820 8.52142 9.02022 9.60652 11.05758 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.002377 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.619713 B =11776.548137 C =12854.575449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.147 4.147 3 C 0.216 3.784 4 H 0.035 0.965 5 C -0.490 4.490 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.679 5.679 14 C 0.128 3.872 15 C 0.041 3.959 16 C -0.222 4.222 17 C -0.175 4.175 18 C 0.000 4.000 19 C 0.005 3.995 20 C -0.093 4.093 21 C -0.106 4.106 22 C -0.038 4.038 23 Cl -0.073 7.073 24 C -0.104 4.104 25 C -0.093 4.093 26 O -0.158 6.158 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.024 0.976 30 H 0.011 0.989 31 H 0.095 0.905 32 H 0.260 0.740 33 H 0.332 0.668 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.301 8.704 20.481 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.053 0.947 5 C -0.529 4.529 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.311 5.311 14 C -0.001 4.001 15 C -0.011 4.011 16 C -0.242 4.242 17 C -0.195 4.195 18 C -0.050 4.050 19 C 0.005 3.995 20 C -0.111 4.111 21 C -0.124 4.124 22 C -0.065 4.065 23 Cl -0.044 7.044 24 C -0.123 4.123 25 C -0.111 4.111 26 O -0.054 6.054 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.030 0.970 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.150 0.850 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.874 9.524 20.018 22.185 hybrid contribution -0.716 -0.522 -0.451 0.994 sum 0.158 9.002 19.567 21.539 Atomic orbital electron populations 1.21608 0.97577 0.98811 1.00869 1.22131 0.95152 1.00900 1.00430 1.19268 0.96205 0.88677 0.84923 0.94668 1.20994 1.30761 1.11589 0.89540 0.92002 1.24904 0.95497 0.95161 0.98724 1.69861 1.38850 1.23938 1.20912 0.86606 0.79560 0.80012 0.81503 1.20297 1.21484 1.20347 1.60837 1.03599 1.63659 1.03032 1.20459 0.98779 0.94129 0.86765 1.22931 0.97703 0.82675 0.97804 1.21494 1.05081 1.01829 0.95817 1.21699 1.02822 0.93386 1.01548 1.20180 1.02239 0.95296 0.87316 1.17859 0.97803 0.89948 0.93913 1.20989 0.99495 0.96770 0.93844 1.20904 0.98443 0.92496 1.00574 1.21026 1.01684 0.88290 0.95468 1.98372 1.95698 1.29359 1.80979 1.21003 0.99943 0.97624 0.93713 1.21324 0.97412 0.92115 1.00252 1.84055 1.58626 1.29435 1.33237 0.91124 0.95388 0.95652 0.97001 0.88681 0.92984 0.84986 0.92595 0.89660 0.83376 0.83490 0.84486 0.84460 0.84476 0.84152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.40 37.16 0.35 -2.35 16 2 C -0.15 -3.27 5.51 -26.73 -0.15 -3.42 16 3 C 0.22 5.14 2.33 -68.87 -0.16 4.98 16 4 H 0.04 0.92 7.70 -51.93 -0.40 0.52 16 5 C -0.49 -12.98 7.25 -34.44 -0.25 -13.23 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.06 1.55 5.28 -17.82 -0.09 1.46 16 8 N -0.90 -24.70 11.38 55.43 0.63 -24.07 16 9 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.68 -13.95 6.19 -109.22 -0.68 -14.62 16 14 C 0.13 2.22 6.04 -4.97 -0.03 2.19 16 15 C 0.04 0.66 6.87 -35.55 -0.24 0.41 16 16 C -0.22 -3.12 10.78 -39.81 -0.43 -3.55 16 17 C -0.18 -2.23 10.26 -39.38 -0.40 -2.64 16 18 C 0.00 0.00 7.03 -36.50 -0.26 -0.26 16 19 C 0.01 0.06 5.87 -104.98 -0.62 -0.56 16 20 C -0.09 -0.87 9.56 -39.19 -0.37 -1.25 16 21 C -0.11 -0.91 9.81 -39.61 -0.39 -1.30 16 22 C -0.04 -0.36 6.32 -39.41 -0.25 -0.61 16 23 Cl -0.07 -0.64 28.95 -51.86 -1.50 -2.14 16 24 C -0.10 -1.02 9.81 -39.61 -0.39 -1.41 16 25 C -0.09 -1.05 9.72 -39.19 -0.38 -1.43 16 26 O -0.16 -2.61 10.41 4.61 0.05 -2.56 16 27 H 0.07 1.61 6.85 -51.93 -0.36 1.25 16 28 H 0.03 0.51 6.63 -51.93 -0.34 0.17 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.01 0.23 7.50 -51.93 -0.39 -0.16 16 31 H 0.09 2.40 6.23 -51.93 -0.32 2.08 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.33 6.52 6.69 -39.29 -0.26 6.26 16 34 H 0.06 0.89 7.54 -51.93 -0.39 0.50 16 35 H 0.09 1.51 7.92 -51.93 -0.41 1.10 16 36 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.15 1.41 7.26 -52.48 -0.38 1.03 16 38 H 0.14 1.00 6.99 -52.49 -0.37 0.63 16 39 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.14 1.58 7.91 -52.48 -0.42 1.17 16 LS Contribution 357.32 15.07 5.38 5.38 Total: -1.00 -28.06 357.32 -10.48 -38.53 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.28 Total: 6.35 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -4.07 Total: -22.95 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: -0.05 Total: -38.69 kcal Atomic # 8 Polarization: -2.61 SS G_CDS: 0.05 Total: -2.56 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.06 -10.48 -38.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547285401.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.130 kcal (2) G-P(sol) polarization free energy of solvation -28.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds