Wall clock time and date at job start Tue Mar 31 2020 12:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47074 * 2 1 4 4 H 1.08998 * 109.47105 * 174.08800 * 3 2 1 5 5 C 1.50699 * 109.46844 * 54.08983 * 3 2 1 6 6 H 1.07998 * 120.00061 * 240.00283 * 5 3 2 7 7 C 1.37876 * 120.00144 * 60.00451 * 5 3 2 8 8 N 1.31517 * 119.99700 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00282 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47152 * 59.99570 * 9 7 5 11 11 H 1.48494 * 109.47056 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46637 * 299.99801 * 9 7 5 13 13 N 1.46900 * 109.47202 * 294.09239 * 3 2 1 14 14 C 1.46895 * 110.99796 * 275.78438 * 13 3 2 15 15 C 1.50703 * 109.47130 * 176.20566 * 14 13 3 16 16 C 1.34729 * 125.66603 * 89.71604 * 15 14 13 17 17 C 1.40934 * 107.03317 * 179.88699 * 16 15 14 18 18 C 1.35950 * 106.74086 * 0.37468 * 17 16 15 19 19 C 1.47793 * 125.93287 * 179.73988 * 18 17 16 20 20 C 1.39597 * 120.12894 * 359.73130 * 19 18 17 21 21 C 1.37934 * 119.85910 * 179.81262 * 20 19 18 22 22 C 1.38481 * 120.13674 * 0.44912 * 21 20 19 23 23 Cl 1.73596 * 119.86673 * 179.76632 * 22 21 20 24 24 C 1.38472 * 120.26503 * 359.78127 * 22 21 20 25 25 C 1.37933 * 120.13668 * 0.02562 * 24 22 21 26 26 O 1.34317 * 125.66187 * 270.02252 * 15 14 13 27 27 H 1.08993 * 109.47169 * 58.55449 * 1 2 3 28 28 H 1.09001 * 109.47002 * 298.55371 * 1 2 3 29 29 H 1.08998 * 109.46842 * 178.55668 * 1 2 3 30 30 H 1.08996 * 109.47248 * 119.99997 * 2 1 3 31 31 H 1.08999 * 109.47448 * 240.00567 * 2 1 3 32 32 H 0.97004 * 119.99628 * 179.97438 * 8 7 5 33 33 H 1.00902 * 110.99884 * 39.73256 * 13 3 2 34 34 H 1.09002 * 109.47243 * 296.20338 * 14 13 3 35 35 H 1.09001 * 109.47481 * 56.20307 * 14 13 3 36 36 H 1.07999 * 126.48167 * 359.97438 * 16 15 14 37 37 H 1.08002 * 126.63216 * 180.14229 * 17 16 15 38 38 H 1.07997 * 120.06867 * 0.02562 * 20 19 18 39 39 H 1.08001 * 119.93374 * 180.20878 * 21 20 19 40 40 H 1.07995 * 119.93122 * 179.97438 * 24 22 21 41 41 H 1.08006 * 120.06919 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1248 1.4444 0.1058 5 6 1.4217 2.1939 1.1508 6 1 0.8148 3.0670 0.9618 7 6 1.6309 1.7667 2.4449 8 7 2.3697 0.7032 2.6749 9 14 0.8640 2.6975 3.8714 10 1 -0.6139 2.6944 3.7270 11 1 1.2375 2.0401 5.1494 12 1 1.3584 4.0978 3.8715 13 7 1.6702 2.0927 -1.2643 14 6 2.6509 1.7939 -2.3164 15 6 2.1911 2.3984 -3.6180 16 6 2.4846 3.6386 -4.0552 17 6 1.8600 3.7928 -5.3092 18 6 1.2062 2.6291 -5.5668 19 6 0.4040 2.3335 -6.7723 20 6 0.2612 3.2968 -7.7725 21 6 -0.4856 3.0136 -8.8971 22 6 -1.1006 1.7801 -9.0309 23 17 -2.0439 1.4334 -10.4464 24 6 -0.9665 0.8223 -8.0399 25 6 -0.2191 1.0922 -6.9125 26 8 1.4159 1.7924 -4.5323 27 1 -0.3633 0.5361 -0.8767 28 1 -0.3633 0.4912 0.9027 29 1 -0.3633 -1.0273 -0.0259 30 1 1.8933 -0.5138 0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 2.5172 0.4029 3.5854 33 1 0.7403 1.8249 -1.5502 34 1 3.6180 2.2150 -2.0418 35 1 2.7440 0.7138 -2.4302 36 1 3.0859 4.3747 -3.5424 37 1 1.8913 4.6679 -5.9414 38 1 0.7372 4.2605 -7.6676 39 1 -0.5941 3.7568 -9.6732 40 1 -1.4489 -0.1377 -8.1496 41 1 -0.1156 0.3445 -6.1400 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547285402.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:42 Heat of formation + Delta-G solvation = 25.522302 kcal Electronic energy + Delta-G solvation = -23104.217909 eV Core-core repulsion = 19590.136416 eV Total energy + Delta-G solvation = -3514.081493 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.47284 -39.43058 -36.83036 -36.65393 -33.28393 -33.11618 -31.89932 -31.41136 -30.71677 -28.46136 -26.37958 -24.49318 -23.44472 -23.26993 -22.40834 -21.21482 -20.13699 -19.36534 -18.04555 -16.76964 -16.23865 -16.05273 -15.60152 -15.26700 -14.76905 -14.69266 -14.22121 -13.92122 -13.83607 -13.47296 -13.22727 -12.98629 -12.75197 -12.57489 -12.18963 -12.00529 -11.95189 -11.88194 -11.75113 -11.63620 -11.14069 -10.91454 -10.76698 -10.56725 -10.04016 -9.95945 -9.94427 -9.61204 -9.44163 -9.40142 -9.05533 -8.38046 -7.85024 -7.34873 -6.01192 -4.02998 0.39647 0.93907 1.78205 1.97347 2.70390 2.84362 3.32879 3.37271 3.40710 3.44395 4.37718 4.41392 4.47168 4.50427 4.89468 4.96098 5.04439 5.11416 5.26658 5.30683 5.37309 5.56253 5.64830 5.74590 5.82242 5.85987 5.93277 6.01188 6.20967 6.22447 6.31315 6.34016 6.37936 6.52175 6.61568 6.85765 7.14847 7.20920 7.27897 7.46016 7.63408 7.83164 8.19459 8.40326 8.52275 9.01842 9.60608 11.05879 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.024004 B = 0.002258 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.191136 B =12396.872735 C =12843.713441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.147 4.147 3 C 0.215 3.785 4 H 0.036 0.964 5 C -0.490 4.490 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.678 5.678 14 C 0.133 3.867 15 C 0.025 3.975 16 C -0.200 4.200 17 C -0.175 4.175 18 C -0.002 4.002 19 C 0.006 3.994 20 C -0.092 4.092 21 C -0.105 4.105 22 C -0.038 4.038 23 Cl -0.072 7.072 24 C -0.104 4.104 25 C -0.095 4.095 26 O -0.170 6.170 27 H 0.029 0.971 28 H 0.067 0.933 29 H 0.023 0.977 30 H 0.094 0.906 31 H 0.011 0.989 32 H 0.260 0.740 33 H 0.331 0.669 34 H 0.099 0.901 35 H 0.039 0.961 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.738 2.123 -22.840 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.186 4.186 3 C 0.108 3.892 4 H 0.054 0.946 5 C -0.529 4.529 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.310 5.310 14 C 0.004 3.996 15 C -0.026 4.026 16 C -0.220 4.220 17 C -0.194 4.194 18 C -0.052 4.052 19 C 0.005 3.995 20 C -0.111 4.111 21 C -0.123 4.123 22 C -0.065 4.065 23 Cl -0.043 7.043 24 C -0.123 4.123 25 C -0.113 4.113 26 O -0.066 6.066 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.113 0.887 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.150 0.850 34 H 0.117 0.883 35 H 0.057 0.943 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.574 2.285 -22.607 23.002 hybrid contribution -0.639 -0.373 0.511 0.899 sum -4.213 1.912 -22.097 22.576 Atomic orbital electron populations 1.21565 0.97576 0.98099 1.01297 1.22125 0.95178 1.00977 1.00352 1.19256 0.96330 0.88764 0.84822 0.94596 1.20977 1.30719 1.11623 0.89587 0.91995 1.24905 0.95521 0.95168 0.98702 1.69871 1.39101 1.24028 1.20524 0.86601 0.79630 0.80008 0.81407 1.20367 1.21497 1.20298 1.61046 1.03888 1.63209 1.02834 1.20534 0.97591 0.97593 0.83909 1.22953 0.94684 0.93198 0.91736 1.21503 1.06499 0.97318 0.96697 1.21769 1.01245 0.98098 0.98289 1.20148 1.04545 0.90585 0.89875 1.17861 0.96238 0.94554 0.90811 1.21003 0.98711 0.99134 0.92210 1.20919 0.97398 0.95545 0.98464 1.21025 0.99015 0.96152 0.90305 1.98374 1.71370 1.95173 1.39433 1.20991 0.99338 0.99253 0.92695 1.21287 0.96006 0.96460 0.97549 1.84008 1.55586 1.41376 1.25650 0.95228 0.91440 0.95803 0.88742 0.96998 0.92992 0.85043 0.88340 0.94265 0.82954 0.83406 0.84410 0.84414 0.84514 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.39 37.16 0.35 -2.35 16 2 C -0.15 -3.34 5.50 -26.73 -0.15 -3.49 16 3 C 0.22 5.13 2.33 -68.86 -0.16 4.97 16 4 H 0.04 0.93 7.86 -51.93 -0.41 0.53 16 5 C -0.49 -12.93 7.35 -34.44 -0.25 -13.18 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.54 5.22 -17.82 -0.09 1.45 16 8 N -0.90 -24.67 11.39 55.43 0.63 -24.04 16 9 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.68 -13.95 6.24 -109.22 -0.68 -14.63 16 14 C 0.13 2.31 6.01 -4.98 -0.03 2.28 16 15 C 0.03 0.41 6.79 -35.55 -0.24 0.16 16 16 C -0.20 -2.89 10.78 -39.80 -0.43 -3.32 16 17 C -0.17 -2.23 10.26 -39.38 -0.40 -2.63 16 18 C 0.00 -0.03 7.03 -36.50 -0.26 -0.28 16 19 C 0.01 0.07 5.87 -104.98 -0.62 -0.55 16 20 C -0.09 -0.85 9.56 -39.19 -0.37 -1.22 16 21 C -0.10 -0.88 9.81 -39.60 -0.39 -1.27 16 22 C -0.04 -0.35 6.32 -39.41 -0.25 -0.60 16 23 Cl -0.07 -0.61 28.95 -51.86 -1.50 -2.11 16 24 C -0.10 -0.97 9.81 -39.61 -0.39 -1.36 16 25 C -0.09 -1.02 9.72 -39.19 -0.38 -1.40 16 26 O -0.17 -2.68 10.41 4.61 0.05 -2.63 16 27 H 0.03 0.57 6.42 -51.93 -0.33 0.24 16 28 H 0.07 1.56 7.05 -51.93 -0.37 1.20 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.09 2.41 6.25 -51.93 -0.32 2.09 16 31 H 0.01 0.24 7.24 -51.93 -0.38 -0.13 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.33 6.76 6.55 -39.29 -0.26 6.50 16 34 H 0.10 1.63 8.13 -51.93 -0.42 1.21 16 35 H 0.04 0.68 7.23 -51.93 -0.38 0.30 16 36 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 37 H 0.15 1.42 7.26 -52.49 -0.38 1.04 16 38 H 0.14 0.98 6.99 -52.49 -0.37 0.61 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.14 1.46 7.91 -52.48 -0.42 1.04 16 LS Contribution 356.93 15.07 5.38 5.38 Total: -1.00 -27.78 356.93 -10.47 -38.26 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.26 Total: 6.58 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -4.06 Total: -22.79 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.05 Total: -38.68 kcal Atomic # 8 Polarization: -2.68 SS G_CDS: 0.05 Total: -2.63 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.78 -10.47 -38.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547285402.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.778 kcal (2) G-P(sol) polarization free energy of solvation -27.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds