Wall clock time and date at job start Tue Mar 31 2020 12:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39735 * 125.78007 * 2 1 4 4 C 1.36139 * 107.86262 * 180.11860 * 3 2 1 5 5 N 1.39387 * 126.26713 * 179.89886 * 4 3 2 6 6 C 1.34777 * 120.00049 * 359.69212 * 5 4 3 7 7 O 1.21621 * 119.99708 * 359.97438 * 6 5 4 8 8 C 1.47357 * 120.00061 * 179.97438 * 6 5 4 9 9 C 1.40248 * 120.21420 * 90.29399 * 8 6 5 10 10 O 1.35663 * 120.13412 * 0.02562 * 9 8 6 11 11 C 1.38574 * 119.72554 * 180.29846 * 9 8 6 12 12 C 1.38187 * 120.15728 * 359.67967 * 11 9 8 13 13 C 1.38369 * 120.43671 * 0.02562 * 12 11 9 14 14 C 1.38168 * 120.27320 * 0.02562 * 13 12 11 15 15 F 1.35104 * 120.08512 * 180.02562 * 14 13 12 16 16 N 1.35809 * 107.47105 * 359.63486 * 4 3 2 17 17 C 1.46500 * 126.09343 * 180.22541 * 16 4 3 18 18 C 1.50702 * 109.47103 * 90.00670 * 17 16 4 19 19 H 1.07994 * 119.99744 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00134 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99999 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99977 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47219 * 89.99754 * 22 20 18 24 24 H 1.48500 * 109.46905 * 209.99733 * 22 20 18 25 25 H 1.48498 * 109.46949 * 329.99630 * 22 20 18 26 26 N 1.30834 * 125.77948 * 179.70262 * 2 1 3 27 27 H 1.09002 * 109.47637 * 270.26920 * 1 2 3 28 28 H 1.08999 * 109.46840 * 30.26698 * 1 2 3 29 29 H 1.08999 * 109.47509 * 150.26635 * 1 2 3 30 30 H 1.08004 * 126.07213 * 359.97438 * 3 2 1 31 31 H 0.96995 * 120.00079 * 179.68568 * 5 4 3 32 32 H 0.96701 * 113.99782 * 270.29271 * 10 9 8 33 33 H 1.08002 * 119.92503 * 179.70408 * 11 9 8 34 34 H 1.08005 * 119.78118 * 180.02562 * 12 11 9 35 35 H 1.08000 * 119.86519 * 179.97438 * 13 12 11 36 36 H 1.09002 * 109.47187 * 210.00420 * 17 16 4 37 37 H 1.08998 * 109.47503 * 330.00315 * 17 16 4 38 38 H 0.97000 * 120.00496 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1336 0.0000 4 6 3.6193 0.7148 -0.0027 5 7 4.7496 1.5305 -0.0056 6 6 4.6131 2.8713 -0.0122 7 8 3.5036 3.3695 -0.0161 8 6 5.8080 3.7336 -0.0147 9 6 6.3783 4.1458 -1.2278 10 8 5.8319 3.7528 -2.4057 11 6 7.5057 4.9516 -1.2183 12 6 8.0620 5.3530 -0.0188 13 6 7.5012 4.9552 1.1819 14 6 6.3778 4.1510 1.1934 15 9 5.8330 3.7652 2.3680 16 7 3.6088 -0.6432 0.0039 17 6 4.7858 -1.5154 0.0086 18 6 5.1889 -1.8077 1.4310 19 1 4.6250 -1.3856 2.2495 20 6 6.2782 -2.6131 1.6872 21 7 6.9652 -3.1267 0.6903 22 14 6.7783 -2.9747 3.4503 23 1 6.0775 -4.1957 3.9231 24 1 8.2461 -3.1904 3.5142 25 1 6.4086 -1.8256 4.3152 26 7 2.2719 -1.0614 0.0055 27 1 -0.3634 0.0048 1.0276 28 1 -0.3633 0.8876 -0.5180 29 1 -0.3634 -0.8923 -0.5097 30 1 1.9876 2.1599 -0.0004 31 1 5.6345 1.1331 -0.0027 32 1 6.1869 2.9200 -2.7455 33 1 7.9503 5.2671 -2.1507 34 1 8.9405 5.9814 -0.0185 35 1 7.9439 5.2740 2.1141 36 1 4.5481 -2.4493 -0.5009 37 1 5.6078 -1.0192 -0.5074 38 1 7.7314 -3.6936 0.8705 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548123271.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:59 Heat of formation + Delta-G solvation = -15.525563 kcal Electronic energy + Delta-G solvation = -26419.909032 eV Core-core repulsion = 22372.170851 eV Total energy + Delta-G solvation = -4047.738181 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.14466 -40.98658 -40.10775 -38.62619 -36.90664 -34.76660 -33.78380 -32.10853 -31.49135 -30.12543 -29.13630 -28.17340 -26.04221 -24.54164 -23.00866 -22.87488 -21.55381 -19.82660 -19.63073 -18.90275 -17.46952 -17.22990 -16.84560 -16.73594 -16.45518 -15.90513 -15.56878 -14.99949 -14.89809 -14.81121 -14.39967 -14.09261 -14.00651 -13.77264 -12.92021 -12.77777 -12.63252 -12.51292 -12.35883 -12.09674 -11.96767 -11.79605 -11.59197 -11.26265 -11.09217 -10.90602 -10.43698 -10.35792 -10.03440 -9.82992 -9.68127 -9.23869 -9.01904 -8.73812 -7.92987 -7.48134 -6.35440 -4.43680 0.54176 0.72531 2.10394 2.69272 3.02495 3.04561 3.15997 3.22682 3.27910 3.52666 3.57116 3.73229 4.07777 4.23104 4.37951 4.53404 4.64373 4.85584 4.98041 5.19753 5.34719 5.48562 5.61635 5.64286 5.76203 5.87326 6.04608 6.14401 6.14901 6.23875 6.30794 6.38130 6.63182 6.80404 7.01577 7.23818 7.46588 7.54333 7.59607 7.77398 7.84379 8.20277 8.59520 8.68898 9.24146 10.71685 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.009442 B = 0.005205 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.783202 B = 5377.783783 C = 7136.465369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.051 3.949 3 C -0.290 4.290 4 C 0.298 3.702 5 N -0.629 5.629 6 C 0.577 3.423 7 O -0.494 6.494 8 C -0.188 4.188 9 C 0.176 3.824 10 O -0.486 6.486 11 C -0.158 4.158 12 C -0.056 4.056 13 C -0.165 4.165 14 C 0.156 3.844 15 F -0.122 7.122 16 N -0.345 5.345 17 C 0.258 3.742 18 C -0.540 4.540 19 H 0.065 0.935 20 C 0.067 3.933 21 N -0.891 5.891 22 Si 0.905 3.095 23 H -0.276 1.276 24 H -0.283 1.283 25 H -0.272 1.272 26 N -0.282 5.282 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.161 0.839 31 H 0.416 0.584 32 H 0.401 0.599 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.057 0.943 37 H 0.043 0.957 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.759 15.695 -3.923 16.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.322 4.322 4 C 0.077 3.923 5 N -0.276 5.276 6 C 0.362 3.638 7 O -0.366 6.366 8 C -0.193 4.193 9 C 0.130 3.870 10 O -0.297 6.297 11 C -0.177 4.177 12 C -0.074 4.074 13 C -0.184 4.184 14 C 0.136 3.864 15 F -0.100 7.100 16 N -0.131 5.131 17 C 0.140 3.860 18 C -0.579 4.579 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.528 5.528 22 Si 0.732 3.268 23 H -0.201 1.201 24 H -0.208 1.208 25 H -0.196 1.196 26 N -0.107 5.107 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.178 0.822 31 H 0.253 0.747 32 H 0.259 0.741 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.957 15.083 -3.882 15.852 hybrid contribution 1.201 -0.255 1.146 1.679 sum 4.157 14.828 -2.736 15.641 Atomic orbital electron populations 1.20027 0.87512 1.02371 1.02205 1.22016 0.96560 0.90924 1.01893 1.21272 0.89079 1.00481 1.21357 1.17990 0.87794 0.83329 1.03235 1.42683 1.08473 1.05116 1.71309 1.17586 0.88562 0.80946 0.76750 1.90763 1.25401 1.73831 1.46595 1.20138 0.99905 1.05652 0.93609 1.18103 0.90529 0.94651 0.83695 1.84792 1.65637 1.44995 1.34298 1.21432 0.95629 1.00906 0.99708 1.21026 0.98794 0.96899 0.90727 1.21141 0.96167 1.00494 1.00572 1.17474 0.92840 0.96110 0.79986 1.91604 1.84813 1.89016 1.44562 1.49504 1.06494 1.01944 1.55152 1.19614 0.77789 0.89695 0.98917 1.21354 1.13327 1.31825 0.91364 0.91677 1.24924 0.95642 0.94847 0.98217 1.69910 1.19245 1.32540 1.31147 0.86365 0.77632 0.79148 0.83678 1.20135 1.20819 1.19623 1.77335 0.86123 1.21778 1.25454 0.91274 0.91106 0.91504 0.82181 0.74698 0.74083 0.83875 0.83907 0.83610 0.92465 0.93949 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.44 36.00 0.38 -0.58 16 2 C 0.05 1.05 7.20 -82.46 -0.59 0.46 16 3 C -0.29 -6.17 9.58 -39.78 -0.38 -6.55 16 4 C 0.30 6.48 7.68 -152.74 -1.17 5.31 16 5 N -0.63 -11.61 5.41 -12.34 -0.07 -11.68 16 6 C 0.58 10.20 6.39 -12.55 -0.08 10.12 16 7 O -0.49 -10.11 14.23 5.26 0.07 -10.04 16 8 C -0.19 -2.65 5.64 -104.80 -0.59 -3.24 16 9 C 0.18 2.01 6.72 -38.70 -0.26 1.75 16 10 O -0.49 -5.40 12.95 -18.69 -0.24 -5.64 16 11 C -0.16 -1.32 9.97 -39.48 -0.39 -1.71 16 12 C -0.06 -0.41 10.02 -39.55 -0.40 -0.81 16 13 C -0.16 -1.54 10.00 -39.56 -0.40 -1.93 16 14 C 0.16 2.05 7.29 -38.97 -0.28 1.77 16 15 F -0.12 -1.88 16.83 2.25 0.04 -1.85 16 16 N -0.34 -8.18 3.62 -61.45 -0.22 -8.40 16 17 C 0.26 6.44 6.02 -5.19 -0.03 6.41 16 18 C -0.54 -14.62 9.39 -34.44 -0.32 -14.94 16 19 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 20 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 21 N -0.89 -24.23 13.29 55.43 0.74 -23.50 16 22 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 N -0.28 -6.64 12.56 33.64 0.42 -6.21 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.16 3.36 5.83 -52.48 -0.31 3.05 16 31 H 0.42 7.08 7.98 -40.82 -0.33 6.76 16 32 H 0.40 2.77 9.06 45.56 0.41 3.19 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.14 0.57 8.06 -52.48 -0.42 0.14 16 35 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.04 1.01 7.52 -51.93 -0.39 0.62 16 38 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 344.81 15.07 5.20 5.20 Total: -1.00 -34.02 344.81 -6.82 -40.84 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -3.11 Total: 7.75 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -4.63 Total: -2.26 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.87 Total: -49.79 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.17 Total: -15.67 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.02 -6.82 -40.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548123271.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.315 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds