Wall clock time and date at job start Tue Mar 31 2020 12:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99816 * 2 1 4 4 H 1.48507 * 109.46645 * 239.99480 * 3 2 1 5 5 H 1.48496 * 109.47215 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47272 * 119.99944 * 3 2 1 7 7 C 1.37870 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00215 * 173.00829 * 7 2 1 9 9 C 1.50703 * 120.00138 * 353.01695 * 7 2 1 10 10 C 1.52998 * 115.55203 * 84.78859 * 9 7 2 11 11 S 1.81396 * 109.47101 * 39.92239 * 10 9 7 12 12 O 1.42104 * 110.54286 * 62.23854 * 11 10 9 13 13 O 1.42100 * 110.54437 * 285.48296 * 11 10 9 14 14 N 1.65606 * 104.44844 * 173.86214 * 11 10 9 15 15 C 1.46498 * 119.99940 * 64.99877 * 14 11 10 16 16 C 1.53006 * 109.47048 * 165.00008 * 15 14 11 17 17 H 1.09000 * 109.57278 * 59.73957 * 16 15 14 18 18 C 1.53092 * 109.57597 * 179.97438 * 16 15 14 19 19 C 1.52575 * 109.95694 * 182.83120 * 18 16 15 20 20 C 1.52582 * 110.72873 * 289.33029 * 19 18 16 21 21 C 1.53099 * 109.95883 * 70.67252 * 20 19 18 22 22 S 1.81747 * 109.57505 * 299.35903 * 16 15 14 23 23 C 1.53007 * 117.51651 * 230.48947 * 9 7 2 24 24 C 1.53001 * 117.49455 * 299.11820 * 9 7 2 25 25 H 0.97000 * 119.99738 * 5.03500 * 1 2 3 26 26 H 1.09003 * 109.47143 * 279.91777 * 10 9 7 27 27 H 1.09002 * 109.47053 * 159.92536 * 10 9 7 28 28 H 0.97007 * 119.99795 * 244.99859 * 14 11 10 29 29 H 1.08993 * 109.46996 * 45.00278 * 15 14 11 30 30 H 1.09003 * 109.47027 * 284.99625 * 15 14 11 31 31 H 1.09000 * 109.39230 * 302.98427 * 18 16 15 32 32 H 1.09002 * 109.38864 * 62.68992 * 18 16 15 33 33 H 1.09008 * 109.22702 * 49.64994 * 19 18 16 34 34 H 1.09000 * 109.23251 * 169.00548 * 19 18 16 35 35 H 1.09005 * 109.39251 * 190.82219 * 20 19 18 36 36 H 1.09000 * 109.38853 * 310.52252 * 20 19 18 37 37 H 1.09005 * 109.57121 * 56.78411 * 21 20 19 38 38 H 1.09000 * 109.57785 * 177.17091 * 21 20 19 39 39 H 1.08996 * 117.50096 * 214.96578 * 23 9 7 40 40 H 1.08996 * 117.49684 * 359.97438 * 23 9 7 41 41 H 1.08998 * 117.49908 * 359.97438 * 24 9 7 42 42 H 1.09000 * 117.50037 * 144.99743 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0785 -1.1975 -0.1133 9 6 1.2595 -2.4942 0.1598 10 6 0.6803 -3.0849 -1.1273 11 16 1.8653 -2.8607 -2.4822 12 8 3.0731 -3.5577 -2.2088 13 8 1.8822 -1.5060 -2.9109 14 7 1.1981 -3.6835 -3.7551 15 6 -0.0679 -3.2310 -4.3370 16 6 -0.2742 -3.9040 -5.6955 17 1 -0.2962 -4.9862 -5.5673 18 6 -1.5970 -3.4332 -6.3056 19 6 -1.8455 -4.1521 -7.6283 20 6 -0.8763 -3.6618 -8.6998 21 6 0.5380 -4.1616 -8.3935 22 16 1.0840 -3.4477 -6.8137 23 6 1.7651 -3.4733 1.2213 24 6 0.4652 -2.6996 1.4513 25 1 -0.4850 0.8368 -0.0737 26 1 -0.2525 -2.5769 -1.3725 27 1 0.4882 -4.1483 -0.9847 28 1 1.6456 -4.4652 -4.1154 29 1 -0.0415 -2.1492 -4.4678 30 1 -0.8892 -3.4967 -3.6715 31 1 -2.4120 -3.6524 -5.6158 32 1 -1.5524 -2.3583 -6.4809 33 1 -1.7100 -5.2242 -7.4851 34 1 -2.8678 -3.9607 -7.9543 35 1 -1.1909 -4.0397 -9.6727 36 1 -0.8788 -2.5719 -8.7187 37 1 0.5330 -5.2492 -8.3201 38 1 1.2156 -3.8504 -9.1885 39 1 1.6851 -4.5381 1.0028 40 1 2.6371 -3.1772 1.8044 41 1 0.4820 -1.8945 2.1859 42 1 -0.4699 -3.2555 1.3840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562721487.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:16 Heat of formation + Delta-G solvation = -66.856044 kcal Electronic energy + Delta-G solvation = -23459.415713 eV Core-core repulsion = 20078.816053 eV Total energy + Delta-G solvation = -3380.599661 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -37.56339 -36.69749 -36.03925 -35.29175 -34.77089 -32.02028 -31.47105 -28.14810 -28.03332 -25.43250 -24.57686 -22.08545 -21.18239 -21.02648 -19.60952 -18.49254 -17.28744 -16.67228 -16.41436 -15.69564 -15.35107 -15.13377 -14.83489 -14.63355 -14.14595 -14.05482 -13.90628 -13.66028 -13.05315 -12.98921 -12.63274 -12.47653 -12.11957 -11.80301 -11.75496 -11.53954 -11.20814 -11.06453 -11.04699 -10.94774 -10.89674 -10.77658 -10.55998 -10.50304 -10.31250 -10.07131 -9.76273 -9.64226 -9.14665 -8.87487 -8.50224 -8.08220 -7.70213 -6.12869 -4.27181 1.25212 1.62083 2.45087 3.38006 3.39910 3.48486 3.65559 4.34956 4.43088 4.43751 4.52042 4.70187 4.76841 4.87367 4.94647 5.08632 5.15114 5.17612 5.30190 5.32289 5.38704 5.52086 5.55896 5.60727 5.68937 5.70772 5.77588 5.85398 5.99489 6.02526 6.21141 6.33822 6.38125 6.63982 6.72237 6.97384 7.20231 7.38452 7.41336 7.82037 8.21844 8.81248 9.49938 10.94788 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018756 B = 0.003956 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.530874 B = 7075.484417 C = 7422.979798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.099 3.901 3 Si 0.890 3.110 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.069 0.931 9 C 0.051 3.949 10 C -0.562 4.562 11 S 2.625 3.375 12 O -0.975 6.975 13 O -0.938 6.938 14 N -1.135 6.135 15 C 0.136 3.864 16 C -0.058 4.058 17 H 0.093 0.907 18 C -0.120 4.120 19 C -0.127 4.127 20 C -0.122 4.122 21 C -0.094 4.094 22 S -0.235 6.235 23 C -0.205 4.205 24 C -0.145 4.145 25 H 0.265 0.735 26 H 0.126 0.874 27 H 0.096 0.904 28 H 0.411 0.589 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.670 -9.973 -14.427 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.108 4.108 3 Si 0.716 3.284 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.580 4.580 8 H 0.087 0.913 9 C 0.049 3.951 10 C -0.694 4.694 11 S 2.721 3.279 12 O -0.966 6.966 13 O -0.928 6.928 14 N -0.892 5.892 15 C 0.008 3.992 16 C -0.188 4.188 17 H 0.111 0.889 18 C -0.160 4.160 19 C -0.165 4.165 20 C -0.161 4.161 21 C -0.242 4.242 22 S -0.009 6.009 23 C -0.242 4.242 24 C -0.183 4.183 25 H 0.075 0.925 26 H 0.144 0.856 27 H 0.114 0.886 28 H 0.243 0.757 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.166 -8.643 -14.129 17.350 hybrid contribution -1.251 -0.533 -0.203 1.375 sum -6.417 -9.176 -14.332 18.188 Atomic orbital electron populations 1.69941 1.06187 1.27535 1.46557 1.24874 0.94713 0.99235 0.92017 0.86659 0.80125 0.82338 0.79250 1.19092 1.21001 1.19953 1.20558 0.93661 0.88797 1.55020 0.91336 1.18161 0.98684 0.93973 0.84250 1.29999 1.16603 1.06231 1.16592 1.04625 0.75264 0.73814 0.74196 1.93484 1.42741 1.75110 1.85241 1.93533 1.85983 1.33929 1.79362 1.56127 1.34775 1.46306 1.51959 1.21052 0.86334 1.00411 0.91391 1.23509 0.95874 1.03111 0.96308 0.88883 1.21787 0.95580 1.01908 0.96732 1.21509 0.99885 1.00276 0.94804 1.21727 0.93302 1.02193 0.98910 1.23496 0.99970 1.02866 0.97875 1.87530 1.32012 1.75708 1.05642 1.23127 0.98689 0.95587 1.06807 1.22528 0.92367 1.01095 1.02355 0.92535 0.85591 0.88580 0.75663 0.89089 0.90604 0.90277 0.89937 0.91848 0.90960 0.91130 0.90446 0.90150 0.87949 0.91278 0.89697 0.89657 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.05 12.96 55.43 0.72 -23.33 16 2 C 0.10 2.74 5.39 -17.82 -0.10 2.65 16 3 Si 0.89 22.04 29.55 -169.99 -5.02 17.02 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.54 -15.08 6.89 -34.44 -0.24 -15.32 16 8 H 0.07 1.96 7.82 -52.49 -0.41 1.55 16 9 C 0.05 1.26 1.64 -155.66 -0.26 1.01 16 10 C -0.56 -11.81 6.18 37.16 0.23 -11.58 16 11 S 2.62 56.37 4.63 -107.50 -0.50 55.88 16 12 O -0.98 -23.26 18.08 -57.54 -1.04 -24.30 16 13 O -0.94 -23.81 16.63 -57.54 -0.96 -24.77 16 14 N -1.14 -17.96 5.48 -10.61 -0.06 -18.02 16 15 C 0.14 1.84 5.58 -4.04 -0.02 1.81 16 16 C -0.06 -0.63 2.62 -26.68 -0.07 -0.70 16 17 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 18 C -0.12 -1.05 5.04 -26.90 -0.14 -1.19 16 19 C -0.13 -0.91 5.61 -27.16 -0.15 -1.06 16 20 C -0.12 -0.90 5.75 -26.89 -0.15 -1.06 16 21 C -0.09 -0.81 6.45 37.21 0.24 -0.57 16 22 S -0.24 -2.97 21.23 -107.50 -2.28 -5.25 16 23 C -0.20 -4.51 9.88 -26.72 -0.26 -4.77 16 24 C -0.14 -3.31 9.50 -26.73 -0.25 -3.56 16 25 H 0.27 7.02 8.32 -40.82 -0.34 6.68 16 26 H 0.13 2.63 8.14 -51.92 -0.42 2.21 16 27 H 0.10 1.68 7.95 -51.92 -0.41 1.26 16 28 H 0.41 5.76 8.52 -34.48 -0.29 5.46 16 29 H 0.09 1.40 7.69 -51.93 -0.40 1.00 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 33 H 0.06 0.43 8.08 -51.92 -0.42 0.01 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 40 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 41 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -33.44 362.56 -11.83 -45.27 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.98 Total: 6.38 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: -1.17 Total: -34.34 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.66 Total: -41.36 kcal Atomic # 8 Polarization: -47.07 SS G_CDS: -2.00 Total: -49.07 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 53.41 SS G_CDS: -2.78 Total: 50.63 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.44 -11.83 -45.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562721487.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.589 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds