Wall clock time and date at job start Tue Mar 31 2020 12:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.50698 * 109.46824 * 239.99625 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00204 * 4 2 1 6 6 C 1.37875 * 120.00046 * 60.00863 * 4 2 1 7 7 N 1.31511 * 120.00192 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47418 * 89.99710 * 8 6 4 10 10 H 1.48498 * 109.47091 * 209.99770 * 8 6 4 11 11 H 1.48508 * 109.47394 * 329.99535 * 8 6 4 12 12 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 13 13 S 1.81391 * 109.47235 * 299.99569 * 12 2 1 14 14 C 1.76193 * 103.00267 * 180.02562 * 13 12 2 15 15 N 1.31328 * 125.48004 * 0.02562 * 14 13 12 16 16 N 1.40426 * 106.95986 * 180.02562 * 15 14 13 17 17 H 0.97001 * 126.80394 * 179.97438 * 16 15 14 18 18 C 1.35213 * 106.39272 * 0.02562 * 16 15 14 19 19 C 1.47842 * 126.03608 * 180.02562 * 18 16 15 20 20 C 1.39511 * 120.16987 * 359.71689 * 19 18 16 21 21 C 1.37929 * 119.91294 * 179.70119 * 20 19 18 22 22 C 1.38446 * 120.26287 * 0.58463 * 21 20 19 23 23 C 1.38163 * 120.34873 * 359.71433 * 22 21 20 24 24 C 1.38593 * 120.08142 * 359.97438 * 23 22 21 25 25 O 1.35793 * 120.13761 * 179.97438 * 24 23 22 26 26 N 1.31861 * 107.92625 * 359.73182 * 18 16 15 27 27 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 28 28 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 29 29 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 32 32 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 33 33 H 0.96996 * 120.00505 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46801 * 59.99811 * 12 2 1 35 35 H 1.09001 * 109.46998 * 179.97438 * 12 2 1 36 36 H 1.07998 * 120.04497 * 0.02562 * 20 19 18 37 37 H 1.07994 * 119.87201 * 180.32690 * 21 20 19 38 38 H 1.07998 * 119.83103 * 179.74360 * 22 21 20 39 39 H 1.08002 * 119.96367 * 180.02562 * 23 22 21 40 40 H 0.96702 * 113.99660 * 270.02229 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0078 9 1 1.3447 -2.1617 -4.4123 10 1 2.4873 -0.1404 -5.1119 11 1 3.6308 -1.7569 -3.7119 12 6 2.0399 -0.7213 1.2493 13 16 1.4353 0.1338 2.7304 14 6 2.1129 -0.8234 4.0452 15 7 2.8673 -1.8889 3.9022 16 7 3.1865 -2.3410 5.1928 17 1 3.7309 -3.1108 5.4208 18 6 2.5838 -1.4913 6.0548 19 6 2.6366 -1.5666 7.5303 20 6 3.3530 -2.5878 8.1550 21 6 3.4038 -2.6495 9.5320 22 6 2.7365 -1.7087 10.2977 23 6 2.0186 -0.6964 9.6904 24 6 1.9632 -0.6170 8.3078 25 8 1.2575 0.3772 7.7098 26 7 1.9458 -0.5799 5.3469 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 0.7090 1.1613 -3.4844 34 1 1.6764 -1.7489 1.2493 35 1 3.1299 -0.7217 1.2492 36 1 3.8715 -3.3260 7.5613 37 1 3.9630 -3.4372 10.0149 38 1 2.7776 -1.7660 11.3753 39 1 1.5007 0.0345 10.2937 40 1 0.3328 0.1537 7.5364 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563442763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:20 Heat of formation + Delta-G solvation = 63.845555 kcal Electronic energy + Delta-G solvation = -23240.783406 eV Core-core repulsion = 19762.700192 eV Total energy + Delta-G solvation = -3478.083215 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.91288 -39.83943 -36.86183 -35.96596 -33.07549 -32.27751 -31.51537 -30.49968 -29.50231 -26.21657 -25.63555 -25.11000 -24.25502 -23.21449 -22.30185 -20.97953 -19.00638 -18.75258 -18.12435 -16.43715 -16.15378 -15.94461 -15.88230 -15.62023 -15.37517 -14.70495 -14.48123 -14.14342 -13.75887 -13.26739 -12.84759 -12.71101 -12.50110 -12.22073 -12.10804 -11.95615 -11.43234 -11.22435 -10.90651 -10.73730 -10.70837 -10.55493 -10.27581 -10.27096 -10.25987 -10.07105 -9.70991 -9.52801 -9.42997 -9.25208 -8.76881 -8.62007 -8.36386 -7.07975 -5.98507 -4.09423 0.35331 0.83201 1.70946 1.82189 2.53024 2.85216 3.15378 3.29560 3.35727 3.36672 3.40317 3.92115 3.96689 4.33105 4.41813 4.52095 4.73530 4.89500 5.07605 5.27562 5.29015 5.42509 5.72506 5.88788 5.94189 5.98527 6.03202 6.15930 6.25806 6.35111 6.55980 6.84231 6.96321 6.98029 7.09805 7.11803 7.39728 7.52491 7.62934 7.73483 8.00177 8.06609 8.17941 8.41282 8.89536 9.55609 11.02621 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.034710 B = 0.002539 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.489742 B =11026.504189 C =11639.347984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.083 3.917 3 C -0.136 4.136 4 C -0.504 4.504 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.079 4.079 13 S 0.011 5.989 14 C 0.209 3.791 15 N -0.312 5.312 16 N -0.482 5.482 17 H 0.436 0.564 18 C 0.321 3.679 19 C -0.060 4.060 20 C -0.084 4.084 21 C -0.131 4.131 22 C -0.086 4.086 23 C -0.150 4.150 24 C 0.164 3.836 25 O -0.471 6.471 26 N -0.487 5.487 27 H 0.019 0.981 28 H 0.087 0.913 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.087 0.913 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.175 -6.041 24.845 25.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.080 3.920 3 C -0.194 4.194 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.228 4.228 13 S 0.239 5.761 14 C -0.179 4.179 15 N -0.146 5.146 16 N -0.201 5.201 17 H 0.281 0.719 18 C 0.044 3.956 19 C -0.064 4.064 20 C -0.104 4.104 21 C -0.149 4.149 22 C -0.105 4.105 23 C -0.168 4.168 24 C 0.116 3.884 25 O -0.282 6.282 26 N -0.216 5.216 27 H 0.038 0.962 28 H 0.106 0.894 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.155 0.845 40 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 1.933 -4.636 24.152 24.669 hybrid contribution 1.244 -2.539 -0.591 2.889 sum 3.177 -7.176 23.561 24.834 Atomic orbital electron populations 1.21913 0.97268 0.99439 1.00772 1.18026 0.93026 0.92538 0.88384 1.21913 0.98694 0.98028 1.00779 1.20994 1.31646 1.12097 0.89648 0.92543 1.24875 0.94913 0.94939 0.98727 1.69810 1.36492 1.22598 1.23269 0.86570 0.79230 0.79385 0.82650 1.20713 1.21196 1.20002 1.24196 1.03337 1.02076 0.93198 1.85888 1.62730 1.34713 0.92723 1.26826 0.97993 0.95941 0.97154 1.78529 1.22489 1.15889 0.97685 1.47959 1.42082 1.25868 1.04185 0.71909 1.22098 0.93327 0.88403 0.91793 1.18103 1.03908 0.97824 0.86538 1.21015 0.97607 0.96496 0.95329 1.21026 1.00791 1.00089 0.93002 1.21220 0.95256 0.93617 1.00391 1.21488 1.02070 0.99767 0.93497 1.18435 0.93607 0.86582 0.89781 1.84823 1.27076 1.35908 1.80403 1.70960 1.25137 1.24580 1.00965 0.96215 0.89437 0.95321 0.95305 0.89437 0.96196 0.92916 0.90550 0.90542 0.85699 0.85021 0.85060 0.84486 0.74456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.01 37.16 0.30 -2.95 16 2 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 3 C -0.14 -3.27 8.01 37.16 0.30 -2.97 16 4 C -0.50 -13.41 8.01 -34.44 -0.28 -13.69 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 7 N -0.88 -24.00 9.35 55.43 0.52 -23.49 16 8 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 C -0.08 -1.73 4.49 37.16 0.17 -1.56 16 13 S 0.01 0.22 19.22 -107.50 -2.07 -1.85 16 14 C 0.21 4.02 8.26 -91.09 -0.75 3.27 16 15 N -0.31 -5.72 12.34 30.10 0.37 -5.35 16 16 N -0.48 -6.70 7.33 32.22 0.24 -6.46 16 17 H 0.44 4.20 8.11 -182.35 -1.48 2.72 16 18 C 0.32 4.62 7.80 -155.46 -1.21 3.41 16 19 C -0.06 -0.66 5.88 -104.84 -0.62 -1.27 16 20 C -0.08 -0.65 9.70 -39.22 -0.38 -1.03 16 21 C -0.13 -0.79 10.03 -39.62 -0.40 -1.18 16 22 C -0.09 -0.51 10.03 -39.53 -0.40 -0.90 16 23 C -0.15 -1.13 9.98 -39.48 -0.39 -1.52 16 24 C 0.16 1.70 6.71 -38.79 -0.26 1.44 16 25 O -0.47 -5.43 11.81 -19.09 -0.23 -5.65 16 26 N -0.49 -8.54 9.70 -11.48 -0.11 -8.65 16 27 H 0.02 0.42 6.91 -51.93 -0.36 0.07 16 28 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 32 H 0.02 0.43 6.92 -51.93 -0.36 0.07 16 33 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.08 1.67 8.14 -51.92 -0.42 1.25 16 35 H 0.08 1.69 8.14 -51.92 -0.42 1.27 16 36 H 0.13 0.68 7.20 -52.49 -0.38 0.31 16 37 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.40 3.24 9.06 45.56 0.41 3.66 16 LS Contribution 346.32 15.07 5.22 5.22 Total: -1.00 -31.93 346.32 -10.47 -42.39 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.29 Total: 3.29 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -4.10 Total: -15.34 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 1.01 Total: -43.95 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.23 Total: -5.65 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -2.07 Total: -1.85 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.93 -10.47 -42.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563442763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.239 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds