Wall clock time and date at job start Tue Mar 31 2020 12:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47033 * 2 1 4 4 H 1.08995 * 109.47514 * 306.13189 * 3 2 1 5 5 C 1.50693 * 109.47168 * 186.12379 * 3 2 1 6 6 H 1.08000 * 120.00449 * 245.15963 * 5 3 2 7 7 C 1.37880 * 120.00098 * 65.16125 * 5 3 2 8 8 N 1.31517 * 120.00270 * 194.55812 * 7 5 3 9 9 Si 1.86803 * 119.99687 * 14.55169 * 7 5 3 10 10 H 1.48499 * 109.46973 * 94.94836 * 9 7 5 11 11 H 1.48498 * 109.46952 * 214.94719 * 9 7 5 12 12 H 1.48497 * 109.47223 * 334.95096 * 9 7 5 13 13 N 1.46910 * 109.47039 * 66.12651 * 3 2 1 14 14 C 1.46892 * 110.99921 * 267.82138 * 13 3 2 15 15 H 1.09003 * 110.43922 * 33.94001 * 14 13 3 16 16 C 1.54632 * 110.48749 * 156.48007 * 14 13 3 17 17 C 1.54481 * 101.76409 * 143.60799 * 16 14 13 18 18 N 1.46765 * 105.47506 * 334.58328 * 17 16 14 19 19 C 1.38802 * 124.34812 * 197.02196 * 18 17 16 20 20 S 1.70440 * 124.64500 * 174.25820 * 19 18 17 21 21 C 1.75468 * 92.52346 * 179.97438 * 20 19 18 22 22 C 1.32618 * 110.77657 * 359.97438 * 21 20 19 23 23 C 1.36979 * 124.64717 * 354.22955 * 19 18 17 24 24 C 1.43199 * 123.58010 * 0.04692 * 23 19 18 25 25 N 8.59695 * 60.15063 * 29.06824 * 2 1 3 26 26 C 1.34423 * 111.29767 * 17.28304 * 18 17 16 27 27 O 1.21287 * 124.93590 * 179.30750 * 26 18 17 28 28 H 1.08999 * 109.47086 * 60.83415 * 1 2 3 29 29 H 1.09003 * 109.46939 * 180.83260 * 1 2 3 30 30 H 1.08998 * 109.47174 * 300.83528 * 1 2 3 31 31 H 1.08997 * 109.46856 * 240.00556 * 2 1 3 32 32 H 1.09003 * 109.46803 * 120.00090 * 2 1 3 33 33 H 0.96997 * 119.99715 * 180.02562 * 8 7 5 34 34 H 1.00897 * 111.00060 * 143.86275 * 13 3 2 35 35 H 1.08996 * 110.96640 * 25.48550 * 16 14 13 36 36 H 1.08999 * 110.99952 * 261.74140 * 16 14 13 37 37 H 1.09007 * 110.24077 * 215.58222 * 17 16 14 38 38 H 1.09004 * 110.32071 * 93.62664 * 17 16 14 39 39 H 1.07999 * 124.61051 * 180.02562 * 21 20 19 40 40 H 1.07992 * 123.42681 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5899 1.9871 -0.8299 5 6 3.5393 1.4452 -0.1516 6 1 4.1627 1.8087 0.6520 7 6 4.1154 0.9838 -1.3162 8 7 5.4023 0.7151 -1.3517 9 14 3.0677 0.7400 -2.8435 10 1 3.1507 1.9509 -3.6990 11 1 3.5640 -0.4366 -3.6014 12 1 1.6558 0.5120 -2.4440 13 7 1.6747 2.0910 1.2666 14 6 0.3854 2.7851 1.1499 15 1 -0.2788 2.2436 0.4762 16 6 -0.2699 2.9472 2.5411 17 6 -0.9361 4.3352 2.4157 18 7 -0.1602 5.0514 1.3963 19 6 -0.1935 6.4263 1.2094 20 16 0.8052 7.2812 0.1245 21 6 0.0890 8.8230 0.5588 22 6 -0.8529 8.6619 1.4783 23 6 -1.0339 7.2821 1.8710 24 6 -1.9902 6.8556 2.8478 25 7 -2.7488 6.5172 3.6227 26 6 0.5824 4.2039 0.6633 27 8 1.3071 4.5299 -0.2530 28 1 -0.3633 0.5008 -0.8974 29 1 -0.3633 -1.0276 0.0149 30 1 -0.3633 0.5267 0.8824 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.8075 0.3908 -2.1711 34 1 2.3995 2.7233 1.5713 35 1 0.4829 2.9455 3.3294 36 1 -1.0152 2.1710 2.7147 37 1 -0.8875 4.8643 3.3675 38 1 -1.9729 4.2300 2.0958 39 1 0.3757 9.7738 0.1343 40 1 -1.4258 9.4783 1.8926 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566428526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:49 Heat of formation + Delta-G solvation = 45.207063 kcal Electronic energy + Delta-G solvation = -24621.668697 eV Core-core repulsion = 21142.777257 eV Total energy + Delta-G solvation = -3478.891440 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.19523 -38.43715 -36.74531 -36.30729 -36.01286 -33.22877 -31.92144 -30.59922 -28.90166 -27.85933 -25.63968 -25.11286 -22.61650 -22.22091 -20.97836 -20.65166 -19.88635 -18.37260 -17.58844 -16.90934 -16.76969 -15.77806 -15.67259 -14.99651 -14.65055 -14.44117 -14.12526 -14.03887 -13.86764 -13.55367 -13.20998 -13.09587 -12.89270 -12.73406 -12.62699 -12.49382 -12.31073 -12.09194 -11.97427 -11.59062 -11.37983 -11.06818 -10.83912 -10.72475 -10.55352 -10.25602 -10.14285 -9.91730 -9.46106 -9.17221 -8.65568 -8.49353 -8.22095 -7.79004 -6.13985 -4.09746 0.50495 0.97474 1.70810 1.74844 2.44882 2.50120 2.56505 3.28049 3.31729 3.36938 3.40561 3.91497 4.15077 4.39316 4.40152 4.55106 4.68163 4.85869 4.96237 5.10677 5.19921 5.23627 5.34770 5.45268 5.72568 5.76039 5.87303 5.91622 5.92658 5.93702 6.10138 6.16351 6.50829 6.56317 6.62090 6.85456 6.88929 7.35411 7.37215 7.51493 7.73255 7.79755 8.06877 8.49963 8.91884 9.50944 10.98867 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.004245 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.324922 B = 6593.769397 C = 7663.991417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C 0.188 3.812 4 H 0.013 0.987 5 C -0.526 4.526 6 H 0.076 0.924 7 C 0.081 3.919 8 N -0.890 5.890 9 Si 0.864 3.136 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.253 1.253 13 N -0.643 5.643 14 C 0.059 3.941 15 H 0.125 0.875 16 C -0.118 4.118 17 C 0.095 3.905 18 N -0.535 5.535 19 C 0.095 3.905 20 S 0.282 5.718 21 C -0.272 4.272 22 C -0.068 4.068 23 C -0.144 4.144 24 C 0.285 3.715 25 N -0.435 5.435 26 C 0.476 3.524 27 O -0.467 6.467 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.264 0.736 34 H 0.347 0.653 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.174 0.826 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.516 12.446 5.148 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.149 4.149 3 C 0.080 3.920 4 H 0.031 0.969 5 C -0.564 4.564 6 H 0.094 0.906 7 C -0.122 4.122 8 N -0.527 5.527 9 Si 0.691 3.309 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.177 1.177 13 N -0.274 5.274 14 C -0.056 4.056 15 H 0.142 0.858 16 C -0.157 4.157 17 C -0.029 4.029 18 N -0.260 5.260 19 C -0.127 4.127 20 S 0.545 5.455 21 C -0.407 4.407 22 C -0.098 4.098 23 C -0.164 4.164 24 C -0.030 4.030 25 N -0.112 5.112 26 C 0.262 3.738 27 O -0.337 6.337 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.166 0.834 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.191 0.809 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.207 10.992 4.945 17.880 hybrid contribution -1.105 1.317 -0.682 1.849 sum -14.312 12.309 4.263 19.353 Atomic orbital electron populations 1.22020 0.98930 1.00166 1.00338 1.21882 0.92429 0.99287 1.01311 1.19598 0.96489 0.90549 0.85394 0.96925 1.20985 0.88910 1.43817 1.02663 0.90581 1.24834 0.94744 0.94062 0.98592 1.69962 1.11390 1.43662 1.27645 0.87164 0.82187 0.77787 0.83778 1.20666 1.21349 1.17723 1.60928 1.01717 1.31484 1.33274 1.22741 0.97514 0.88093 0.97245 0.85792 1.22728 1.00858 0.94221 0.97877 1.22563 0.95557 0.93628 0.91146 1.45620 1.43528 1.01814 1.34991 1.22137 1.00677 0.87750 1.02096 1.84425 1.32562 0.93398 1.35089 1.25608 1.05166 1.03432 1.06524 1.20620 0.98495 0.93446 0.97266 1.16003 1.02499 0.93037 1.04899 1.24819 0.92449 0.93375 0.92380 1.81279 1.10995 1.07727 1.11234 1.23190 0.78673 0.90445 0.81492 1.90817 1.35226 1.80893 1.26750 0.94244 0.94082 0.92581 0.92823 0.91897 0.92616 0.83369 0.88533 0.88216 0.89572 0.90009 0.80894 0.83151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 8.63 37.16 0.32 -2.28 16 2 C -0.11 -2.28 4.86 -26.73 -0.13 -2.41 16 3 C 0.19 4.19 1.58 -68.86 -0.11 4.08 16 4 H 0.01 0.31 5.92 -51.93 -0.31 0.00 16 5 C -0.53 -14.25 9.00 -34.44 -0.31 -14.56 16 6 H 0.08 2.23 7.80 -52.49 -0.41 1.82 16 7 C 0.08 2.28 5.34 -17.82 -0.10 2.19 16 8 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 9 Si 0.86 21.20 25.75 -169.99 -4.38 16.82 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.25 -5.80 5.49 56.52 0.31 -5.49 16 13 N -0.64 -11.84 6.02 -100.96 -0.61 -12.45 16 14 C 0.06 0.88 2.03 -67.72 -0.14 0.74 16 15 H 0.12 1.84 5.34 -51.93 -0.28 1.56 16 16 C -0.12 -1.29 6.89 -25.10 -0.17 -1.47 16 17 C 0.09 1.04 5.51 -3.12 -0.02 1.02 16 18 N -0.53 -7.13 3.10 -114.41 -0.36 -7.49 16 19 C 0.09 1.19 6.96 -14.85 -0.10 1.09 16 20 S 0.28 3.30 20.92 -107.50 -2.25 1.05 16 21 C -0.27 -2.25 11.10 28.83 0.32 -1.93 16 22 C -0.07 -0.59 10.35 -38.98 -0.40 -0.99 16 23 C -0.14 -1.59 5.88 -105.92 -0.62 -2.22 16 24 C 0.28 3.39 12.36 -22.47 -0.28 3.11 16 25 N -0.43 -5.71 18.22 41.84 0.76 -4.95 16 26 C 0.48 7.67 7.31 -10.86 -0.08 7.59 16 27 O -0.47 -9.18 15.41 5.55 0.09 -9.09 16 28 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.82 5.91 -51.93 -0.31 0.51 16 31 H 0.05 1.19 5.03 -51.93 -0.26 0.93 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.35 6.73 7.83 -39.29 -0.31 6.42 16 35 H 0.10 1.05 8.09 -51.93 -0.42 0.63 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.93 6.50 -51.93 -0.34 0.59 16 38 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 39 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 338.27 15.07 5.10 5.10 Total: -1.00 -31.36 338.27 -7.49 -38.85 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.80 Total: 4.09 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -1.82 Total: -6.03 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 0.57 Total: -50.79 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.38 Total: 16.82 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.25 Total: 1.05 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.36 -7.49 -38.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566428526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.056 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds