Wall clock time and date at job start Tue Mar 31 2020 12:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46844 * 2 1 4 4 H 1.09001 * 109.47407 * 181.83316 * 3 2 1 5 5 C 1.50703 * 109.47439 * 301.83727 * 3 2 1 6 6 H 1.07998 * 120.00057 * 119.99518 * 5 3 2 7 7 C 1.37878 * 119.99767 * 300.00008 * 5 3 2 8 8 N 1.31519 * 119.99963 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99862 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47216 * 59.99735 * 9 7 5 11 11 H 1.48500 * 109.47107 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47034 * 299.99842 * 9 7 5 13 13 N 1.46907 * 109.46818 * 61.83850 * 3 2 1 14 14 C 1.46898 * 110.99974 * 80.83503 * 13 3 2 15 15 H 1.08998 * 110.43395 * 321.47517 * 14 13 3 16 16 C 1.54628 * 110.48342 * 198.79231 * 14 13 3 17 17 C 1.54661 * 101.68268 * 216.30991 * 16 14 13 18 18 N 1.46760 * 105.38377 * 25.76858 * 17 16 14 19 19 C 1.38799 * 124.35380 * 162.85968 * 18 17 16 20 20 S 1.70435 * 124.64970 * 185.25534 * 19 18 17 21 21 C 1.75473 * 92.52334 * 179.97438 * 20 19 18 22 22 C 1.32617 * 110.77818 * 359.97438 * 21 20 19 23 23 C 1.36996 * 124.64477 * 5.51834 * 19 18 17 24 24 C 1.43200 * 123.57713 * 359.97438 * 23 19 18 25 25 N 8.47857 * 106.41665 * 64.19666 * 2 1 3 26 26 C 1.34423 * 111.29914 * 342.58783 * 18 17 16 27 27 O 1.21283 * 124.94328 * 180.69644 * 26 18 17 28 28 H 1.08990 * 109.47254 * 65.39974 * 1 2 3 29 29 H 1.09004 * 109.46580 * 185.40721 * 1 2 3 30 30 H 1.08999 * 109.46534 * 305.39624 * 1 2 3 31 31 H 1.09003 * 109.47059 * 240.00522 * 2 1 3 32 32 H 1.09000 * 109.47790 * 120.00301 * 2 1 3 33 33 H 0.96998 * 119.99462 * 180.02562 * 8 7 5 34 34 H 1.00898 * 110.99579 * 204.79248 * 13 3 2 35 35 H 1.08999 * 110.97307 * 334.64073 * 16 14 13 36 36 H 1.08999 * 110.97254 * 98.36986 * 16 14 13 37 37 H 1.09003 * 110.39801 * 266.73399 * 17 16 14 38 38 H 1.08998 * 110.18354 * 144.68212 * 17 16 14 39 39 H 1.07993 * 124.61080 * 179.97438 * 21 20 19 40 40 H 1.08000 * 123.42588 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1295 1.4428 -0.0329 5 6 1.5008 2.1661 -1.2071 6 1 0.8832 3.0429 -1.0798 7 6 1.7958 1.7085 -2.4738 8 7 2.5482 0.6410 -2.6287 9 14 1.1281 2.6057 -3.9700 10 1 1.6236 4.0055 -3.9697 11 1 1.5856 1.9183 -5.2043 12 1 -0.3562 2.6059 -3.9253 13 7 1.5868 2.1221 1.2211 14 6 2.4488 1.7850 2.3619 15 1 2.7414 0.7358 2.3208 16 6 1.7295 2.0975 3.6945 17 6 2.9000 2.5997 4.5719 18 7 3.8956 3.1242 3.6298 19 6 4.9380 3.9702 3.9822 20 16 6.0213 4.6853 2.8777 21 6 6.9002 5.5088 4.1538 22 6 6.3740 5.2349 5.3399 23 6 5.2402 4.3407 5.2660 24 6 4.5074 3.8944 6.4125 25 7 3.9262 3.5401 7.3220 26 6 3.6717 2.6753 2.3826 27 8 4.3514 2.9445 1.4150 28 1 -0.3633 0.4278 -0.9343 29 1 -0.3633 -1.0232 0.0968 30 1 -0.3632 0.5953 0.8377 31 1 1.8933 -0.5138 -0.8901 32 1 1.8935 -0.5139 0.8899 33 1 2.7561 0.3193 -3.5199 34 1 1.5425 3.1207 1.0839 35 1 0.9772 2.8745 3.5589 36 1 1.2853 1.1970 4.1186 37 1 3.3228 1.7770 5.1485 38 1 2.5576 3.3914 5.2383 39 1 7.7536 6.1513 3.9949 40 1 6.7568 5.6348 6.2673 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566428527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:51 Heat of formation + Delta-G solvation = 39.075817 kcal Electronic energy + Delta-G solvation = -24452.346769 eV Core-core repulsion = 20973.189458 eV Total energy + Delta-G solvation = -3479.157311 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.10021 -38.37162 -36.53066 -36.16000 -35.93856 -33.33889 -31.50861 -30.14610 -28.80880 -27.07557 -25.40332 -24.99623 -23.24812 -22.17304 -20.98315 -20.69253 -19.09413 -18.30842 -17.50617 -16.73228 -16.35300 -15.69942 -15.35913 -14.89165 -14.61144 -14.29711 -14.13637 -13.95906 -13.69954 -13.48069 -13.36683 -13.03122 -12.86574 -12.64682 -12.43877 -12.31302 -11.98023 -11.81265 -11.68385 -11.15679 -11.03049 -10.89237 -10.73660 -10.51783 -10.40391 -10.32179 -9.97845 -9.77550 -9.46291 -8.85126 -8.62083 -8.50100 -8.16780 -7.50114 -6.01814 -4.06458 0.55129 1.01438 1.74606 1.78214 2.53766 2.55311 2.61494 3.31686 3.35546 3.36322 3.38647 3.95921 4.23750 4.40225 4.47016 4.68592 4.73630 4.93690 5.00152 5.22598 5.29263 5.36033 5.46944 5.49941 5.76460 5.88051 5.92270 6.02878 6.22168 6.44145 6.58009 6.61307 6.79369 7.11475 7.15624 7.40442 7.41061 7.65554 7.71280 7.79840 7.88847 8.08293 8.24979 8.48878 8.97289 9.57170 11.04743 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018050 B = 0.003853 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.875189 B = 7264.455462 C = 8410.318822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.105 4.105 3 C 0.209 3.791 4 H 0.020 0.980 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.650 5.650 14 C 0.069 3.931 15 H 0.119 0.881 16 C -0.118 4.118 17 C 0.095 3.905 18 N -0.536 5.536 19 C 0.097 3.903 20 S 0.281 5.719 21 C -0.273 4.273 22 C -0.068 4.068 23 C -0.146 4.146 24 C 0.285 3.715 25 N -0.436 5.436 26 C 0.475 3.525 27 O -0.467 6.467 28 H 0.053 0.947 29 H 0.013 0.987 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.008 0.992 33 H 0.261 0.739 34 H 0.337 0.663 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.173 0.827 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.911 6.509 14.312 16.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.143 4.143 3 C 0.102 3.898 4 H 0.038 0.962 5 C -0.549 4.549 6 H 0.076 0.924 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.280 5.280 14 C -0.046 4.046 15 H 0.137 0.863 16 C -0.156 4.156 17 C -0.029 4.029 18 N -0.261 5.261 19 C -0.125 4.125 20 S 0.544 5.456 21 C -0.409 4.409 22 C -0.098 4.098 23 C -0.167 4.167 24 C -0.030 4.030 25 N -0.113 5.113 26 C 0.262 3.738 27 O -0.336 6.336 28 H 0.072 0.928 29 H 0.032 0.968 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.155 0.845 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.191 0.809 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.141 5.436 13.523 15.455 hybrid contribution 0.616 1.167 0.346 1.364 sum 5.757 6.603 13.869 16.404 Atomic orbital electron populations 1.21450 0.97361 0.97215 1.01708 1.21495 0.95196 0.98134 0.99494 1.19328 0.94717 0.91256 0.84488 0.96200 1.20981 1.31755 1.11993 0.90137 0.92446 1.24830 0.95011 0.95007 0.98768 1.69867 1.37068 1.23055 1.22602 0.86636 0.79289 0.79826 0.82106 1.20361 1.21344 1.20264 1.61085 1.47106 1.14077 1.05734 1.22463 0.88183 0.99413 0.94549 0.86301 1.22747 0.96121 1.03454 0.93319 1.22590 0.88524 0.99484 0.92259 1.45705 1.25418 1.43388 1.11547 1.22153 0.95556 0.96939 0.97842 1.84403 1.19035 1.38551 1.03599 1.25600 1.08130 1.10167 0.96989 1.20614 0.93451 0.96766 0.98959 1.16001 1.03176 1.11480 0.86014 1.24821 0.92710 0.93045 0.92393 1.81277 1.09919 1.10094 1.10050 1.23349 0.87978 0.81555 0.80935 1.90808 1.49924 1.57486 1.35428 0.92771 0.96771 0.93498 0.89299 0.97288 0.92898 0.84483 0.88792 0.88262 0.90012 0.89725 0.80950 0.83198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 9.46 37.16 0.35 -2.18 16 2 C -0.10 -2.39 5.52 -26.73 -0.15 -2.54 16 3 C 0.21 4.93 2.09 -68.86 -0.14 4.79 16 4 H 0.02 0.55 6.78 -51.93 -0.35 0.19 16 5 C -0.51 -13.32 7.35 -34.44 -0.25 -13.58 16 6 H 0.06 1.49 7.68 -52.49 -0.40 1.09 16 7 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 8 N -0.89 -24.76 11.34 55.43 0.63 -24.13 16 9 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.65 -12.36 5.30 -100.96 -0.53 -12.89 16 14 C 0.07 1.08 3.04 -67.73 -0.21 0.87 16 15 H 0.12 1.92 6.89 -51.93 -0.36 1.56 16 16 C -0.12 -1.36 6.89 -25.00 -0.17 -1.54 16 17 C 0.10 1.09 5.52 -3.03 -0.02 1.08 16 18 N -0.54 -7.39 3.10 -114.31 -0.35 -7.74 16 19 C 0.10 1.25 6.96 -14.84 -0.10 1.15 16 20 S 0.28 3.35 20.91 -107.50 -2.25 1.11 16 21 C -0.27 -2.33 11.10 28.83 0.32 -2.01 16 22 C -0.07 -0.60 10.35 -38.98 -0.40 -1.01 16 23 C -0.15 -1.67 5.88 -105.92 -0.62 -2.29 16 24 C 0.29 3.50 12.37 -22.47 -0.28 3.22 16 25 N -0.44 -5.88 18.21 41.84 0.76 -5.12 16 26 C 0.48 7.92 7.32 -10.86 -0.08 7.84 16 27 O -0.47 -9.42 14.69 5.55 0.08 -9.34 16 28 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.93 7.50 -51.93 -0.39 0.54 16 31 H 0.09 2.31 6.12 -51.93 -0.32 1.99 16 32 H 0.01 0.18 7.10 -51.93 -0.37 -0.19 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.34 6.52 8.12 -39.29 -0.32 6.20 16 35 H 0.09 1.07 8.09 -51.93 -0.42 0.65 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 38 H 0.08 0.95 6.47 -51.93 -0.34 0.61 16 39 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 344.48 15.07 5.19 5.19 Total: -1.00 -29.60 344.48 -8.24 -37.84 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.89 Total: 3.64 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -1.85 Total: -4.52 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.50 Total: -49.88 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.08 Total: -9.34 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -2.25 Total: 1.11 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.60 -8.24 -37.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566428527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.912 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds