Wall clock time and date at job start Tue Mar 31 2020 12:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46844 * 2 1 4 4 H 1.09001 * 109.47407 * 181.83316 * 3 2 1 5 5 C 1.50703 * 109.47439 * 301.83727 * 3 2 1 6 6 H 1.07998 * 120.00057 * 119.99518 * 5 3 2 7 7 C 1.37878 * 119.99767 * 300.00008 * 5 3 2 8 8 N 1.31519 * 119.99963 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99862 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47216 * 59.99735 * 9 7 5 11 11 H 1.48500 * 109.47107 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47034 * 299.99842 * 9 7 5 13 13 N 1.46907 * 109.46818 * 61.83850 * 3 2 1 14 14 C 1.46898 * 110.99974 * 80.83503 * 13 3 2 15 15 H 1.08998 * 110.43395 * 321.47517 * 14 13 3 16 16 C 1.54628 * 110.48342 * 198.79231 * 14 13 3 17 17 C 1.54661 * 101.68268 * 216.30991 * 16 14 13 18 18 N 1.46760 * 105.38377 * 25.76858 * 17 16 14 19 19 C 1.38799 * 124.35380 * 162.85968 * 18 17 16 20 20 S 1.70435 * 124.64970 * 185.25534 * 19 18 17 21 21 C 1.75473 * 92.52334 * 179.97438 * 20 19 18 22 22 C 1.32617 * 110.77818 * 359.97438 * 21 20 19 23 23 C 1.36996 * 124.64477 * 5.51834 * 19 18 17 24 24 C 1.43200 * 123.57713 * 359.97438 * 23 19 18 25 25 N 8.47857 * 106.41665 * 64.19666 * 2 1 3 26 26 C 1.34423 * 111.29914 * 342.58783 * 18 17 16 27 27 O 1.21283 * 124.94328 * 180.69644 * 26 18 17 28 28 H 1.08990 * 109.47254 * 65.39974 * 1 2 3 29 29 H 1.09004 * 109.46580 * 185.40721 * 1 2 3 30 30 H 1.08999 * 109.46534 * 305.39624 * 1 2 3 31 31 H 1.09003 * 109.47059 * 240.00522 * 2 1 3 32 32 H 1.09000 * 109.47790 * 120.00301 * 2 1 3 33 33 H 0.96998 * 119.99462 * 180.02562 * 8 7 5 34 34 H 1.00898 * 110.99579 * 204.79248 * 13 3 2 35 35 H 1.08999 * 110.97307 * 334.64073 * 16 14 13 36 36 H 1.08999 * 110.97254 * 98.36986 * 16 14 13 37 37 H 1.09003 * 110.39801 * 266.73399 * 17 16 14 38 38 H 1.08998 * 110.18354 * 144.68212 * 17 16 14 39 39 H 1.07993 * 124.61080 * 179.97438 * 21 20 19 40 40 H 1.08000 * 123.42588 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1295 1.4428 -0.0329 5 6 1.5008 2.1661 -1.2071 6 1 0.8832 3.0429 -1.0798 7 6 1.7958 1.7085 -2.4738 8 7 2.5482 0.6410 -2.6287 9 14 1.1281 2.6057 -3.9700 10 1 1.6236 4.0055 -3.9697 11 1 1.5856 1.9183 -5.2043 12 1 -0.3562 2.6059 -3.9253 13 7 1.5868 2.1221 1.2211 14 6 2.4488 1.7850 2.3619 15 1 2.7414 0.7358 2.3208 16 6 1.7295 2.0975 3.6945 17 6 2.9000 2.5997 4.5719 18 7 3.8956 3.1242 3.6298 19 6 4.9380 3.9702 3.9822 20 16 6.0213 4.6853 2.8777 21 6 6.9002 5.5088 4.1538 22 6 6.3740 5.2349 5.3399 23 6 5.2402 4.3407 5.2660 24 6 4.5074 3.8944 6.4125 25 7 3.9262 3.5401 7.3220 26 6 3.6717 2.6753 2.3826 27 8 4.3514 2.9445 1.4150 28 1 -0.3633 0.4278 -0.9343 29 1 -0.3633 -1.0232 0.0968 30 1 -0.3632 0.5953 0.8377 31 1 1.8933 -0.5138 -0.8901 32 1 1.8935 -0.5139 0.8899 33 1 2.7561 0.3193 -3.5199 34 1 1.5425 3.1207 1.0839 35 1 0.9772 2.8745 3.5589 36 1 1.2853 1.1970 4.1186 37 1 3.3228 1.7770 5.1485 38 1 2.5576 3.3914 5.2383 39 1 7.7536 6.1513 3.9949 40 1 6.7568 5.6348 6.2673 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566428527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:51 Heat of formation + Delta-G solvation = 20.835898 kcal Electronic energy + Delta-G solvation = -24453.137711 eV Core-core repulsion = 20973.189458 eV Total energy + Delta-G solvation = -3479.948253 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.26577 -39.39471 -37.97992 -37.49259 -36.95367 -34.85196 -33.18865 -31.60407 -29.77109 -28.65081 -26.86622 -26.10375 -25.04959 -23.17158 -22.16045 -21.63542 -20.80757 -19.40638 -18.73872 -18.11498 -17.76731 -16.85993 -16.71662 -16.59629 -15.57378 -15.49330 -15.27774 -15.25571 -15.08320 -14.83663 -14.52533 -14.40307 -14.06914 -13.81380 -13.71084 -13.59162 -13.28456 -13.16136 -12.89730 -12.77755 -12.53054 -12.41351 -12.21003 -12.10577 -11.88072 -11.56277 -11.42461 -11.31220 -11.24409 -10.78377 -10.51134 -9.53796 -9.18961 -9.07599 -8.06577 -6.16922 -0.42352 0.11854 0.91496 1.01512 1.30923 1.43402 1.43973 1.50955 1.55044 1.61794 2.41011 2.44360 2.98987 3.08559 3.23395 3.44682 3.51008 3.80326 3.95261 4.03745 4.26319 4.27392 4.33601 4.67467 4.78360 4.82593 4.94261 4.99826 5.00222 5.02919 5.12870 5.28907 5.34575 5.40581 5.48603 5.59123 5.71366 5.87048 5.90078 6.29013 6.35437 6.43321 6.62049 6.70877 6.98574 7.50061 8.98807 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018050 B = 0.003853 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.875189 B = 7264.455462 C = 8410.318822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.100 4.100 3 C 0.219 3.781 4 H -0.023 1.023 5 C -0.519 4.519 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.950 3.050 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.269 1.269 13 N -0.641 5.641 14 C 0.064 3.936 15 H 0.114 0.886 16 C -0.101 4.101 17 C 0.098 3.902 18 N -0.533 5.533 19 C 0.067 3.933 20 S 0.231 5.769 21 C -0.241 4.241 22 C -0.070 4.070 23 C -0.132 4.132 24 C 0.296 3.704 25 N -0.453 5.453 26 C 0.473 3.527 27 O -0.514 6.514 28 H 0.028 0.972 29 H 0.035 0.965 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.027 0.973 33 H 0.259 0.741 34 H 0.333 0.667 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.208 0.792 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.735 7.652 16.622 19.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.139 4.139 3 C 0.111 3.889 4 H -0.005 1.005 5 C -0.558 4.558 6 H 0.073 0.927 7 C -0.181 4.181 8 N -0.555 5.555 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.194 1.194 13 N -0.270 5.270 14 C -0.051 4.051 15 H 0.131 0.869 16 C -0.139 4.139 17 C -0.025 4.025 18 N -0.258 5.258 19 C -0.153 4.153 20 S 0.494 5.506 21 C -0.376 4.376 22 C -0.099 4.099 23 C -0.153 4.153 24 C -0.019 4.019 25 N -0.131 5.131 26 C 0.260 3.740 27 O -0.388 6.388 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.151 0.849 35 H 0.119 0.881 36 H 0.144 0.856 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.225 0.775 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.960 6.597 15.892 17.908 hybrid contribution 0.791 0.880 -0.226 1.204 sum 5.751 7.477 15.666 18.286 Atomic orbital electron populations 1.21309 0.95675 0.98617 1.00857 1.21351 0.96545 0.97302 0.98705 1.18997 0.91984 0.92088 0.85861 1.00540 1.21311 1.31226 1.11883 0.91343 0.92698 1.25552 0.95411 0.95720 1.01398 1.70015 1.38316 1.24361 1.22816 0.85740 0.78998 0.78620 0.79041 1.20204 1.21268 1.19403 1.60979 1.47782 1.13419 1.04795 1.22567 0.88351 0.99002 0.95172 0.86869 1.22734 0.95885 1.04875 0.90429 1.22711 0.87956 0.99938 0.91871 1.45538 1.26030 1.43324 1.10862 1.22266 0.96197 0.98328 0.98480 1.84655 1.20187 1.39674 1.06078 1.25910 1.07821 1.08800 0.95077 1.20956 0.92422 0.96125 1.00388 1.16291 1.03233 1.10818 0.84980 1.24868 0.92297 0.92550 0.92144 1.81299 1.10442 1.10615 1.10762 1.23314 0.87851 0.81498 0.81328 1.90783 1.51473 1.59313 1.37205 0.95312 0.94627 0.92067 0.92677 0.95468 0.93198 0.84894 0.88126 0.85606 0.88974 0.89002 0.77479 0.79887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.46 9.46 71.98 0.68 -3.77 16 2 C -0.10 -4.66 5.52 30.60 0.17 -4.49 16 3 C 0.22 10.66 2.09 44.17 0.09 10.75 16 4 H -0.02 -1.32 6.78 -2.39 -0.02 -1.33 16 5 C -0.52 -27.83 7.35 25.60 0.19 -27.64 16 6 H 0.05 2.90 7.68 -2.91 -0.02 2.88 16 7 C 0.02 1.01 5.30 84.65 0.45 1.46 16 8 N -0.92 -52.91 11.34 21.45 0.24 -52.67 16 9 Si 0.95 43.80 29.54 68.60 2.03 45.82 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 N -0.64 -24.58 5.30 -473.32 -2.51 -27.09 16 14 C 0.06 1.99 3.04 44.91 0.14 2.13 16 15 H 0.11 3.66 6.89 -2.39 -0.02 3.65 16 16 C -0.10 -2.13 6.89 31.71 0.22 -1.92 16 17 C 0.10 2.08 5.52 86.90 0.48 2.56 16 18 N -0.53 -14.50 3.10 -634.16 -1.97 -16.47 16 19 C 0.07 1.69 6.96 83.30 0.58 2.27 16 20 S 0.23 5.46 20.91 -56.49 -1.18 4.28 16 21 C -0.24 -3.40 11.10 66.66 0.74 -2.66 16 22 C -0.07 -1.01 10.35 22.73 0.24 -0.77 16 23 C -0.13 -2.72 5.88 -20.70 -0.12 -2.84 16 24 C 0.30 6.56 12.37 88.33 1.09 7.65 16 25 N -0.45 -11.20 18.21 19.00 0.35 -10.85 16 26 C 0.47 16.18 7.32 87.90 0.64 16.82 16 27 O -0.51 -21.98 14.69 -3.04 -0.04 -22.02 16 28 H 0.03 1.31 7.37 -2.39 -0.02 1.29 16 29 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.06 2.34 7.50 -2.39 -0.02 2.32 16 31 H 0.05 2.95 6.12 -2.39 -0.01 2.94 16 32 H 0.03 1.13 7.10 -2.39 -0.02 1.11 16 33 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 34 H 0.33 13.15 8.12 -89.70 -0.73 12.42 16 35 H 0.10 2.05 8.09 -2.39 -0.02 2.03 16 36 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.09 1.79 8.06 -2.39 -0.02 1.77 16 38 H 0.09 1.85 6.47 -2.39 -0.02 1.84 16 39 H 0.21 1.46 8.06 -2.91 -0.02 1.44 16 40 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -67.09 344.48 2.86 -64.23 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.36 Total: 15.21 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 5.58 Total: -0.45 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -3.89 Total: -107.07 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.04 Total: -22.02 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 5.46 SS G_CDS: -1.18 Total: 4.28 kcal Total: -67.09 2.86 -64.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566428527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.070 kcal (2) G-P(sol) polarization free energy of solvation -67.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds